Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19635

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,383,459	-		HGI48_RS19630	0.32	+0.5
4,383,497	-		HGI48_RS19630	0.36	-0.5
4,383,499	+		HGI48_RS19630	0.36	-1.8
4,383,548	+		HGI48_RS19630	0.40	+0.5
4,383,548	+		HGI48_RS19630	0.40	+0.2
4,383,548	+		HGI48_RS19630	0.40	+0.4
4,383,548	+		HGI48_RS19630	0.40	-0.7
4,383,548	+		HGI48_RS19630	0.40	+0.3
4,383,548	+		HGI48_RS19630	0.40	+0.8
4,383,548	+		HGI48_RS19630	0.40	-0.8
4,383,549	-		HGI48_RS19630	0.40	+0.5
4,383,644	+		HGI48_RS19630	0.49	-0.1
4,383,644	+		HGI48_RS19630	0.49	+0.3
4,383,644	+		HGI48_RS19630	0.49	-0.7
4,383,644	+		HGI48_RS19630	0.49	+1.4
4,383,645	-		HGI48_RS19630	0.49	-0.1
4,383,684	+		HGI48_RS19630	0.52	+0.1
4,383,684	+		HGI48_RS19630	0.52	-0.9
4,383,684	+		HGI48_RS19630	0.52	+0.0
4,383,684	+		HGI48_RS19630	0.52	-1.1
4,383,684	+		HGI48_RS19630	0.52	-1.3
4,383,685	-		HGI48_RS19630	0.52	+0.8
4,383,685	-		HGI48_RS19630	0.52	+0.2
4,383,685	-		HGI48_RS19630	0.52	+1.0
4,383,685	-				+0.9
4,383,685	-		HGI48_RS19630	0.52	-0.4
4,383,685	-		HGI48_RS19630	0.52	-0.4
4,383,685	-		HGI48_RS19630	0.52	+0.3
4,383,777	+		HGI48_RS19630	0.61	-1.7
4,383,777	+		HGI48_RS19630	0.61	+0.3
4,383,777	+		HGI48_RS19630	0.61	-1.7
4,383,777	+		HGI48_RS19630	0.61	+0.4
4,383,778	-		HGI48_RS19630	0.61	+0.9
4,383,778	-		HGI48_RS19630	0.61	+0.2
4,383,778	-		HGI48_RS19630	0.61	+0.5
4,383,792	+		HGI48_RS19630	0.62	+0.6
4,383,792	+		HGI48_RS19630	0.62	+0.9
4,383,846	+		HGI48_RS19630	0.67	-1.1
4,383,846	+		HGI48_RS19630	0.67	+1.1
4,383,846	+		HGI48_RS19630	0.67	+0.9
4,383,846	+		HGI48_RS19630	0.67	+0.6
4,383,847	-		HGI48_RS19630	0.67	-1.4
4,383,847	-		HGI48_RS19630	0.67	-1.1
4,383,847	-		HGI48_RS19630	0.67	-0.7
4,383,847	-		HGI48_RS19630	0.67	+0.2
4,383,847	-		HGI48_RS19630	0.67	+1.5
4,383,848	+		HGI48_RS19630	0.67	+2.2
4,383,849	-		HGI48_RS19630	0.67	-2.0
4,383,859	-		HGI48_RS19630	0.68	+0.0
4,383,971	+		HGI48_RS19630	0.78	-1.7
4,384,032	+		HGI48_RS19630	0.83	-0.3
4,384,032	+		HGI48_RS19630	0.83	-0.7
4,384,032	+		HGI48_RS19630	0.83	-0.1
4,384,032	+		HGI48_RS19630	0.83	-0.7
4,384,032	+		HGI48_RS19630	0.83	-1.9
4,384,033	-		HGI48_RS19630	0.83	-1.1
4,384,033	-		HGI48_RS19630	0.83	+1.5
4,384,033	-		HGI48_RS19630	0.83	-0.1
4,384,055	+				+1.3
4,384,066	-		HGI48_RS19630	0.86	+0.1
4,384,067	+		HGI48_RS19630	0.86	+0.9
4,384,067	+		HGI48_RS19630	0.86	+0.0
4,384,116	+				+0.7
4,384,116	+				-0.1
4,384,116	+				+0.5
4,384,116	+				-0.4
4,384,116	+				-0.7
4,384,116	+				-1.3
4,384,117	-				+0.9
4,384,117	-				-0.9
4,384,117	-				+0.1
4,384,117	-				-0.1
4,384,123	-				-1.7
4,384,163	+				-2.2
4,384,167	+				+1.2
4,384,168	-				-0.7
4,384,168	-				+1.3
4,384,182	-				-1.0
4,384,214	+				-0.1
4,384,215	-				-0.1
4,384,215	-				-1.4
4,384,215	-				+1.1
4,384,218	+				+0.5
4,384,218	+				-1.9
4,384,218	+				+1.4
4,384,219	-				+0.1
4,384,331	+				-2.1
4,384,373	+				-1.8
4,384,373	+				+0.5
4,384,373	+				-1.7
4,384,388	+				+0.9
4,384,397	+				-0.7
4,384,397	+				-1.0
4,384,397	+				-1.2
4,384,397	+				-1.3
4,384,398	-				+0.9
4,384,398	-				+0.2
4,384,398	-				-0.4
4,384,398	-				+0.5
4,384,398	-				-0.2
4,384,415	-				-0.4
4,384,656	+		HGI48_RS19635	0.21	-0.4
4,384,656	+		HGI48_RS19635	0.21	-0.3
4,384,657	-		HGI48_RS19635	0.21	-0.4
4,384,657	-				-0.1
4,384,657	-		HGI48_RS19635	0.21	-1.9
4,384,657	-		HGI48_RS19635	0.21	-0.1
4,384,727	+		HGI48_RS19635	0.27	+0.3
4,384,738	+		HGI48_RS19635	0.28	-0.2
4,384,738	+		HGI48_RS19635	0.28	+0.2
4,384,738	+		HGI48_RS19635	0.28	+0.3
4,384,738	+				+2.1
4,384,738	+		HGI48_RS19635	0.28	+1.1
4,384,738	+		HGI48_RS19635	0.28	+0.9
4,384,739	-		HGI48_RS19635	0.28	+0.4
4,384,751	+		HGI48_RS19635	0.29	+0.3
4,384,751	+		HGI48_RS19635	0.29	+0.3
4,384,751	+				+0.9
4,384,751	+		HGI48_RS19635	0.29	+1.1
4,384,752	-		HGI48_RS19635	0.29	-1.2
4,384,752	-		HGI48_RS19635	0.29	-0.4
4,384,752	-		HGI48_RS19635	0.29	+0.2
4,384,833	+		HGI48_RS19635	0.35	+0.9
4,384,834	-		HGI48_RS19635	0.35	-0.5
4,384,834	-		HGI48_RS19635	0.35	-1.2
4,384,931	+		HGI48_RS19635	0.43	-0.1
4,384,931	+		HGI48_RS19635	0.43	+0.5
4,384,932	-		HGI48_RS19635	0.43	+0.6
4,384,950	-		HGI48_RS19635	0.44	-1.1
4,384,972	-		HGI48_RS19635	0.46	-0.7
4,384,994	+		HGI48_RS19635	0.48	-1.7
4,384,995	-		HGI48_RS19635	0.48	-0.4
4,385,024	+		HGI48_RS19635	0.50	+1.2
4,385,058	+		HGI48_RS19635	0.53	-0.3
4,385,078	+				-0.1
4,385,079	-		HGI48_RS19635	0.55	-2.1
4,385,079	-		HGI48_RS19635	0.55	-0.1
4,385,130	+		HGI48_RS19635	0.59	-0.4
4,385,131	-		HGI48_RS19635	0.59	+0.0
4,385,131	-		HGI48_RS19635	0.59	+0.6
4,385,151	-		HGI48_RS19635	0.60	-0.1
4,385,235	+		HGI48_RS19635	0.67	+1.5
4,385,235	+		HGI48_RS19635	0.67	-0.0
4,385,235	+		HGI48_RS19635	0.67	-1.2
4,385,235	+		HGI48_RS19635	0.67	-0.7
4,385,235	+		HGI48_RS19635	0.67	-1.0
4,385,235	+		HGI48_RS19635	0.67	-0.7
4,385,235	+		HGI48_RS19635	0.67	-0.5
4,385,235	+		HGI48_RS19635	0.67	-0.1
4,385,236	-		HGI48_RS19635	0.67	-2.2
4,385,236	-		HGI48_RS19635	0.67	-0.5
4,385,236	-		HGI48_RS19635	0.67	+0.3
4,385,236	-		HGI48_RS19635	0.67	-0.2
4,385,236	-		HGI48_RS19635	0.67	+0.7
4,385,249	+		HGI48_RS19635	0.68	-0.7
4,385,249	+		HGI48_RS19635	0.68	-0.3
4,385,252	+		HGI48_RS19635	0.68	-1.5
4,385,252	+		HGI48_RS19635	0.68	-1.1
4,385,252	+		HGI48_RS19635	0.68	+0.3
4,385,253	-		HGI48_RS19635	0.68	+1.1
4,385,282	+		HGI48_RS19635	0.71	-0.1
4,385,283	-		HGI48_RS19635	0.71	+0.1
4,385,603	+				+0.7
4,385,624	-				+0.5
4,385,662	+				-1.0
4,385,663	-				+0.6
4,385,663	-				-0.1
4,385,663	-				-0.3
4,385,672	+				-1.1
4,385,673	-				-1.7
4,385,684	-				+0.3
4,385,684	-				+1.4
4,385,684	-				-1.0
4,385,693	+				+1.4
4,385,693	+				-0.7
4,385,693	+				+0.5
4,385,693	+				-1.4
4,385,694	-				-2.1
4,385,694	-				-1.1
4,385,704	+				-1.3
4,385,705	-				-0.5
4,385,714	+				-0.5
4,385,714	+				-0.6
4,385,714	+				-0.9
4,385,714	+				+0.2
4,385,714	+				+1.6
4,385,715	-				-1.1
4,385,715	-				+1.0
4,385,718	+				+0.5
4,385,718	+				+1.2
4,385,718	+				-0.8
4,385,718	+				-1.9
4,385,718	+				-1.4
4,385,777	+				-0.9
4,385,777	+				-0.9
4,385,915	-				+0.1
4,386,149	-		HGI48_RS19640	0.40	-1.7
4,386,149	-		HGI48_RS19640	0.40	+0.6
4,386,149	-		HGI48_RS19640	0.40	-0.1
4,386,157	+				+0.3
4,386,158	-				-0.1
4,386,158	-		HGI48_RS19640	0.41	-0.9
4,386,178	+		HGI48_RS19640	0.45	-0.9
4,386,178	+		HGI48_RS19640	0.45	-0.5
4,386,178	+		HGI48_RS19640	0.45	+0.9
4,386,179	-		HGI48_RS19640	0.45	-0.3
4,386,235	+		HGI48_RS19640	0.55	-0.0
4,386,235	+		HGI48_RS19640	0.55	-1.2
4,386,235	+		HGI48_RS19640	0.55	+1.9
4,386,236	-		HGI48_RS19640	0.55	-1.4
4,386,236	-		HGI48_RS19640	0.55	-0.3
4,386,278	+		HGI48_RS19640	0.62	-1.4
4,386,279	-		HGI48_RS19640	0.62	+0.4
4,386,292	+		HGI48_RS19640	0.65	-1.5
4,386,303	+		HGI48_RS19640	0.67	+0.2
4,386,303	+		HGI48_RS19640	0.67	-0.1
4,386,321	+		HGI48_RS19640	0.70	-0.3
4,386,321	+		HGI48_RS19640	0.70	+0.7
4,386,321	+		HGI48_RS19640	0.70	-0.2
4,386,321	+		HGI48_RS19640	0.70	-1.1
4,386,321	+		HGI48_RS19640	0.70	+0.9
4,386,322	-		HGI48_RS19640	0.70	-1.0
4,386,322	-		HGI48_RS19640	0.70	+0.1
4,386,458	+				-0.7
4,386,459	-				-0.2
4,386,459	-				-1.9
4,386,459	-				+0.7
4,386,459	-				-0.1
4,386,459	-				-1.8
4,386,459	-				-1.4
4,386,467	+				+0.2
4,386,479	+				-1.4
4,386,480	-				-0.9
4,386,480	-				-1.1
4,386,481	+				+0.9
4,386,481	+				-0.1
4,386,482	-				+0.1
4,386,482	-				-1.9
4,386,539	-				-0.1
4,386,569	+				-1.1
4,386,569	+				-1.7
4,386,569	+				+1.2
4,386,618	+				-1.2
4,386,619	-				+0.3
4,386,631	-				-0.1
4,386,641	+				+1.3