Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19595

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,371,824	+				+0.9
4,372,039	+		HGI48_RS19585	0.30	+1.3
4,372,040	-		HGI48_RS19585	0.31	+0.1
4,372,043	+		HGI48_RS19585	0.31	-2.1
4,372,044	-		HGI48_RS19585	0.32	-0.5
4,372,152	+		HGI48_RS19585	0.66	+0.9
4,372,159	-		HGI48_RS19585	0.68	+0.5
4,372,166	+		HGI48_RS19585	0.70	+0.9
4,372,269	-				-1.9
4,372,269	-				+0.3
4,372,274	+				+2.2
4,372,275	-				-0.2
4,372,275	-				+1.2
4,372,275	-				-1.0
4,372,275	-				+0.8
4,372,275	-				+0.7
4,372,320	-				-0.7
4,372,360	+				+0.7
4,372,360	+				+0.8
4,372,361	-				+2.5
4,372,361	-				+1.3
4,372,416	+				-0.1
4,372,421	-				+0.7
4,372,442	+				-1.0
4,372,718	+				+0.1
4,372,719	-				-1.0
4,372,719	-				+1.7
4,372,719	-				-0.5
4,372,724	+				-0.5
4,372,724	+				-0.9
4,372,725	-				+1.7
4,372,725	-				+0.9
4,372,725	-				-1.4
4,372,725	-				+0.7
4,372,727	+				+0.6
4,372,727	+				-0.1
4,372,804	+				+2.5
4,372,807	+				-0.1
4,372,807	+				+0.1
4,372,807	+				-2.5
4,372,807	+				+1.1
4,372,808	-				+1.3
4,372,808	-				-0.3
4,372,808	-				+1.7
4,372,808	-				-1.2
4,372,808	-				-1.1
4,372,810	+				+0.4
4,372,811	-				+2.3
4,372,811	-				+1.7
4,372,811	-				-0.1
4,372,811	-				-2.0
4,372,873	+				+0.5
4,372,873	+				+0.5
4,372,879	+				-1.4
4,372,999	-				+0.9
4,373,041	+		HGI48_RS19595	0.12	-2.1
4,373,059	+		HGI48_RS19595	0.13	-1.3
4,373,060	-		HGI48_RS19595	0.13	-0.1
4,373,060	-		HGI48_RS19595	0.13	+1.1
4,373,060	-		HGI48_RS19595	0.13	-1.8
4,373,063	+		HGI48_RS19595	0.13	+0.2
4,373,063	+		HGI48_RS19595	0.13	-0.3
4,373,063	+		HGI48_RS19595	0.13	+0.2
4,373,063	+		HGI48_RS19595	0.13	+0.5
4,373,064	-		HGI48_RS19595	0.13	-1.5
4,373,064	-		HGI48_RS19595	0.13	+2.7
4,373,064	-		HGI48_RS19595	0.13	+0.9
4,373,064	-		HGI48_RS19595	0.13	+0.9
4,373,064	-		HGI48_RS19595	0.13	-0.8
4,373,097	-		HGI48_RS19595	0.15	+0.5
4,373,110	+				+0.9
4,373,110	+		HGI48_RS19595	0.15	+0.3
4,373,123	+		HGI48_RS19595	0.16	+0.5
4,373,189	+		HGI48_RS19595	0.19	+0.7
4,373,189	+		HGI48_RS19595	0.19	-0.2
4,373,190	-		HGI48_RS19595	0.20	+0.9
4,373,190	-		HGI48_RS19595	0.20	-1.7
4,373,190	-		HGI48_RS19595	0.20	+1.1
4,373,237	+		HGI48_RS19595	0.22	-1.7
4,373,280	-		HGI48_RS19595	0.24	-0.3
4,373,280	-		HGI48_RS19595	0.24	+0.5
4,373,326	+				+1.9
4,373,326	+		HGI48_RS19595	0.26	+1.1
4,373,350	+		HGI48_RS19595	0.28	-1.1
4,373,351	-		HGI48_RS19595	0.28	+0.7
4,373,381	+		HGI48_RS19595	0.29	-1.4
4,373,389	+		HGI48_RS19595	0.30	-2.1
4,373,504	+		HGI48_RS19595	0.36	+0.9
4,373,504	+		HGI48_RS19595	0.36	-1.5
4,373,522	+		HGI48_RS19595	0.36	-0.4
4,373,528	-		HGI48_RS19595	0.37	-1.4
4,373,528	-		HGI48_RS19595	0.37	+0.4
4,373,558	-		HGI48_RS19595	0.38	-0.9
4,373,659	+		HGI48_RS19595	0.43	+0.2
4,373,659	+				+1.3
4,373,659	+		HGI48_RS19595	0.43	-0.2
4,373,659	+		HGI48_RS19595	0.43	-0.9
4,373,659	+		HGI48_RS19595	0.43	+1.5
4,373,659	+		HGI48_RS19595	0.43	-1.0
4,373,660	-		HGI48_RS19595	0.43	-0.4
4,373,660	-		HGI48_RS19595	0.43	-2.0
4,373,660	-		HGI48_RS19595	0.43	-0.2
4,373,660	-		HGI48_RS19595	0.43	-1.1
4,373,907	+		HGI48_RS19595	0.56	+0.9
4,373,907	+		HGI48_RS19595	0.56	+0.4
4,373,907	+		HGI48_RS19595	0.56	-1.4
4,373,908	-				+1.9
4,373,930	+		HGI48_RS19595	0.57	-1.7
4,373,934	+		HGI48_RS19595	0.57	-1.2
4,374,042	+				+0.9
4,374,043	-		HGI48_RS19595	0.63	-1.7
4,374,063	+		HGI48_RS19595	0.64	+0.1
4,374,111	+		HGI48_RS19595	0.66	+0.1
4,374,127	+		HGI48_RS19595	0.67	-0.1
4,374,128	-		HGI48_RS19595	0.67	+0.5
4,374,153	+		HGI48_RS19595	0.69	-1.1
4,374,153	+		HGI48_RS19595	0.69	-1.1
4,374,153	+		HGI48_RS19595	0.69	+2.3
4,374,154	-		HGI48_RS19595	0.69	+0.3
4,374,318	+		HGI48_RS19595	0.77	-0.7
4,374,355	-				+0.3
4,374,407	+		HGI48_RS19595	0.81	+0.3
4,374,477	-				+2.9
4,374,509	+		HGI48_RS19595	0.87	-0.1
4,374,509	+		HGI48_RS19595	0.87	-0.0
4,374,561	-		HGI48_RS19595	0.89	+1.3
4,374,593	+				+0.6
4,374,624	+				-0.1
4,374,927	+				+0.1
4,375,053	-				+0.5
4,375,073	+				-0.1
4,375,074	-				-1.7
4,375,107	+				-0.5
4,375,124	-				-0.9
4,375,158	-				+0.4
4,375,177	+				+0.7
4,375,178	-				-0.4
4,375,178	-				-1.4
4,375,285	+				+0.2
4,375,285	+				-0.8
4,375,286	-				+2.4
4,375,286	-				-0.7
4,375,286	-				+1.9
4,375,286	-				+0.5
4,375,293	-				+0.6
4,375,293	-				+0.7
4,375,322	+		HGI48_RS19600	0.11	-0.9
4,375,323	-		HGI48_RS19600	0.11	-0.1
4,375,335	-		HGI48_RS19600	0.13	-1.2
4,375,367	+		HGI48_RS19600	0.18	-0.5
4,375,367	+		HGI48_RS19600	0.18	-0.1
4,375,368	-		HGI48_RS19600	0.18	-0.3
4,375,368	-		HGI48_RS19600	0.18	+0.9
4,375,486	+		HGI48_RS19600	0.37	-1.7
4,375,579	+		HGI48_RS19600	0.52	+0.4
4,375,586	+		HGI48_RS19600	0.53	-0.7
4,375,587	-		HGI48_RS19600	0.53	+1.2
4,375,608	-		HGI48_RS19600	0.56	+0.3
4,375,645	+		HGI48_RS19600	0.62	+0.5
4,375,646	-				+2.7
4,375,682	-		HGI48_RS19600	0.68	+3.4
4,375,682	-		HGI48_RS19600	0.68	-1.7
4,375,682	-				-0.1
4,375,716	-		HGI48_RS19600	0.74	+1.3
4,375,716	-		HGI48_RS19600	0.74	-2.9
4,375,716	-		HGI48_RS19600	0.74	+0.3