Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19065

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,279,725	+		HGI48_RS19060	0.47	-2.4
4,279,725	+		HGI48_RS19060	0.47	-0.7
4,279,725	+		HGI48_RS19060	0.47	-0.3
4,279,726	-		HGI48_RS19060	0.47	-1.0
4,279,726	-		HGI48_RS19060	0.47	+0.5
4,279,726	-		HGI48_RS19060	0.47	-2.1
4,279,726	-		HGI48_RS19060	0.47	+0.1
4,279,726	-		HGI48_RS19060	0.47	-2.1
4,279,726	-		HGI48_RS19060	0.47	-0.8
4,279,796	-		HGI48_RS19060	0.51	-0.3
4,279,796	-				-0.1
4,279,796	-		HGI48_RS19060	0.51	+0.6
4,279,796	-		HGI48_RS19060	0.51	-0.9
4,279,796	-				+2.9
4,279,796	-		HGI48_RS19060	0.51	-0.1
4,279,799	+		HGI48_RS19060	0.51	-0.3
4,279,800	-		HGI48_RS19060	0.51	-1.9
4,279,800	-		HGI48_RS19060	0.51	-1.4
4,279,821	+		HGI48_RS19060	0.52	+0.5
4,279,821	+		HGI48_RS19060	0.52	-0.4
4,279,822	-		HGI48_RS19060	0.52	+0.1
4,279,855	+				-0.1
4,279,855	+		HGI48_RS19060	0.54	+0.6
4,279,856	-		HGI48_RS19060	0.54	-0.7
4,279,896	+		HGI48_RS19060	0.56	-0.3
4,279,896	+		HGI48_RS19060	0.56	-0.9
4,279,897	-		HGI48_RS19060	0.56	+1.3
4,279,897	-		HGI48_RS19060	0.56	+0.1
4,279,897	-		HGI48_RS19060	0.56	-0.7
4,279,897	-		HGI48_RS19060	0.56	-1.3
4,279,897	-		HGI48_RS19060	0.56	-0.1
4,279,950	+		HGI48_RS19060	0.59	+2.2
4,279,950	+		HGI48_RS19060	0.59	+0.1
4,279,951	-		HGI48_RS19060	0.59	-0.8
4,279,951	-		HGI48_RS19060	0.59	-1.7
4,279,951	-		HGI48_RS19060	0.59	-0.2
4,279,951	-		HGI48_RS19060	0.59	+0.5
4,279,951	-		HGI48_RS19060	0.59	-1.0
4,279,955	+		HGI48_RS19060	0.60	-1.0
4,280,281	-		HGI48_RS19060	0.78	+0.3
4,280,374	+		HGI48_RS19060	0.83	-0.2
4,280,394	+		HGI48_RS19060	0.84	-1.0
4,280,395	-		HGI48_RS19060	0.84	-0.9
4,280,435	+		HGI48_RS19060	0.86	-0.7
4,280,435	+		HGI48_RS19060	0.86	-0.9
4,280,435	+		HGI48_RS19060	0.86	-0.7
4,280,435	+		HGI48_RS19060	0.86	-1.4
4,280,435	+		HGI48_RS19060	0.86	-1.4
4,280,435	+		HGI48_RS19060	0.86	+0.1
4,280,548	-				-1.4
4,280,548	-				-0.6
4,280,548	-				-0.3
4,280,679	+				+0.2
4,280,679	+				-2.1
4,280,679	+				-1.1
4,280,710	+				+0.7
4,280,710	+				-0.4
4,280,710	+				+1.2
4,280,711	-				-1.9
4,280,749	+		HGI48_RS19065	0.11	-0.4
4,280,749	+		HGI48_RS19065	0.11	-0.3
4,280,750	-		HGI48_RS19065	0.11	+2.6
4,280,750	-		HGI48_RS19065	0.11	-1.0
4,280,750	-		HGI48_RS19065	0.11	+0.0
4,280,750	-		HGI48_RS19065	0.11	-0.0
4,280,750	-		HGI48_RS19065	0.11	+0.0
4,280,750	-		HGI48_RS19065	0.11	+0.2
4,280,762	-		HGI48_RS19065	0.12	-2.6
4,280,762	-		HGI48_RS19065	0.12	+0.4
4,280,762	-		HGI48_RS19065	0.12	-1.1
4,280,797	+		HGI48_RS19065	0.17	+0.4
4,280,797	+		HGI48_RS19065	0.17	+0.5
4,280,798	-		HGI48_RS19065	0.17	+0.8
4,280,798	-				-0.7
4,280,923	+		HGI48_RS19065	0.34	-0.7
4,280,923	+		HGI48_RS19065	0.34	-1.4
4,280,923	+		HGI48_RS19065	0.34	-1.7
4,280,924	-		HGI48_RS19065	0.34	-0.3
4,280,925	+		HGI48_RS19065	0.35	-0.6
4,280,926	-		HGI48_RS19065	0.35	-0.4
4,281,028	+		HGI48_RS19065	0.49	-0.3
4,281,028	+		HGI48_RS19065	0.49	+1.2
4,281,029	-		HGI48_RS19065	0.49	-1.6
4,281,029	-		HGI48_RS19065	0.49	-3.0
4,281,049	-		HGI48_RS19065	0.51	-0.0
4,281,097	+		HGI48_RS19065	0.58	+0.5
4,281,097	+		HGI48_RS19065	0.58	-0.9
4,281,097	+		HGI48_RS19065	0.58	+0.1
4,281,097	+		HGI48_RS19065	0.58	+0.5
4,281,097	+		HGI48_RS19065	0.58	-0.1
4,281,097	+		HGI48_RS19065	0.58	-1.3
4,281,098	-		HGI48_RS19065	0.58	+0.0
4,281,209	-		HGI48_RS19065	0.73	+0.9
4,281,285	+		HGI48_RS19065	0.84	-0.3
4,281,286	-		HGI48_RS19065	0.84	+0.5
4,281,355	-				-0.1
4,281,392	+				-0.1
4,281,392	+				-2.3
4,281,392	+				-2.6
4,281,392	+				+0.3
4,281,392	+				+0.7
4,281,392	+				+2.9
4,281,392	+				+0.5
4,281,393	-				-1.2
4,281,393	-				-2.7
4,281,393	-				+1.5
4,281,404	-				-3.4
4,281,432	+				+0.7
4,281,433	-				+0.3
4,281,433	-				-0.7
4,281,433	-				-2.2
4,281,439	+				-0.4
4,281,439	+				-0.7
4,281,439	+				+0.6
4,281,439	+				+0.1
4,281,440	-				-1.4
4,281,440	-				+1.7
4,281,440	-				-2.4
4,281,440	-				+0.1
4,281,440	-				+0.1
4,281,493	+		HGI48_RS19070	0.19	-2.0
4,281,493	+		HGI48_RS19070	0.19	-0.8
4,281,493	+		HGI48_RS19070	0.19	-0.9
4,281,493	+		HGI48_RS19070	0.19	-2.9
4,281,494	-		HGI48_RS19070	0.19	-0.1
4,281,495	+		HGI48_RS19070	0.19	-1.0
4,281,495	+		HGI48_RS19070	0.19	-0.9
4,281,495	+		HGI48_RS19070	0.19	+0.5
4,281,623	+		HGI48_RS19070	0.52	-1.1
4,281,636	+		HGI48_RS19070	0.55	-0.1
4,281,637	-		HGI48_RS19070	0.55	-0.4
4,281,637	-		HGI48_RS19070	0.55	-1.4
4,281,705	+		HGI48_RS19070	0.72	-1.3
4,281,705	+		HGI48_RS19070	0.72	-1.8
4,281,705	+		HGI48_RS19070	0.72	-0.6
4,281,834	-				-1.4
4,281,834	-				+0.4
4,281,978	+		HGI48_RS19075	0.42	-0.5
4,281,978	+				-0.7
4,281,978	+		HGI48_RS19075	0.42	-0.8
4,281,979	-		HGI48_RS19075	0.42	-0.9
4,282,128	+		HGI48_RS19075	0.84	-1.3
4,282,128	+		HGI48_RS19075	0.84	+0.2
4,282,129	-		HGI48_RS19075	0.84	-2.1
4,282,129	-		HGI48_RS19075	0.84	+0.1
4,282,174	+				-0.3
4,282,174	+				-0.2
4,282,174	+				+1.7
4,282,175	-				-1.9
4,282,175	-				+0.3
4,282,175	-				+0.3
4,282,182	+				-0.1
4,282,182	+				+1.1
4,282,182	+				-2.8
4,282,182	+				+0.2
4,282,182	+				-1.4
4,282,183	-				+0.1
4,282,183	-				-1.7
4,282,230	+				-1.4
4,282,231	-				-0.4
4,282,273	+				-2.4
4,282,274	-				+0.1
4,282,274	-				+0.1
4,282,274	-				+0.3
4,282,274	-				-1.9
4,282,274	-				-1.3
4,282,283	+				-1.1
4,282,290	+				+0.2
4,282,325	-				+0.2
4,282,342	-				-0.8
4,282,358	+				-1.9