Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18590

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,172,062	+		HGI48_RS18585	0.33	-0.1
4,172,063	-		HGI48_RS18585	0.33	-0.8
4,172,063	-		HGI48_RS18585	0.33	-1.1
4,172,064	+		HGI48_RS18585	0.33	-1.4
4,172,064	+				+1.6
4,172,065	-		HGI48_RS18585	0.33	-0.8
4,172,065	-		HGI48_RS18585	0.33	-1.1
4,172,117	+		HGI48_RS18585	0.37	-2.1
4,172,117	+		HGI48_RS18585	0.37	-0.4
4,172,118	-		HGI48_RS18585	0.37	-1.7
4,172,158	+		HGI48_RS18585	0.40	-0.1
4,172,180	-				+1.6
4,172,180	-		HGI48_RS18585	0.41	+1.0
4,172,193	+		HGI48_RS18585	0.42	-1.5
4,172,194	-		HGI48_RS18585	0.42	-0.9
4,172,194	-		HGI48_RS18585	0.42	-1.5
4,172,222	+		HGI48_RS18585	0.44	-0.1
4,172,270	+		HGI48_RS18585	0.48	-1.5
4,172,270	+		HGI48_RS18585	0.48	-1.1
4,172,270	+		HGI48_RS18585	0.48	-1.7
4,172,270	+		HGI48_RS18585	0.48	-1.7
4,172,270	+		HGI48_RS18585	0.48	-1.9
4,172,271	-		HGI48_RS18585	0.48	-0.3
4,172,271	-				+0.3
4,172,271	-		HGI48_RS18585	0.48	-0.7
4,172,271	-		HGI48_RS18585	0.48	-0.6
4,172,271	-		HGI48_RS18585	0.48	-0.4
4,172,271	-		HGI48_RS18585	0.48	-1.1
4,172,274	+		HGI48_RS18585	0.48	-0.7
4,172,274	+				+2.4
4,172,275	-		HGI48_RS18585	0.48	+0.8
4,172,275	-		HGI48_RS18585	0.48	-0.7
4,172,275	-		HGI48_RS18585	0.48	-0.1
4,172,275	-		HGI48_RS18585	0.48	-1.1
4,172,275	-		HGI48_RS18585	0.48	+1.9
4,172,275	-		HGI48_RS18585	0.48	-0.6
4,172,304	+				-0.1
4,172,304	+				+2.4
4,172,305	-		HGI48_RS18585	0.50	-2.5
4,172,308	-		HGI48_RS18585	0.50	+0.1
4,172,308	-		HGI48_RS18585	0.50	-0.9
4,172,308	-				+0.9
4,172,329	-				+0.3
4,172,329	-		HGI48_RS18585	0.52	-0.7
4,172,329	-		HGI48_RS18585	0.52	-1.5
4,172,356	+		HGI48_RS18585	0.54	+0.3
4,172,356	+		HGI48_RS18585	0.54	-1.1
4,172,455	-		HGI48_RS18585	0.61	-0.5
4,172,515	+				-0.1
4,172,515	+				+0.9
4,172,515	+		HGI48_RS18585	0.65	-0.9
4,172,516	-				-0.1
4,172,516	-		HGI48_RS18585	0.65	+0.5
4,172,516	-		HGI48_RS18585	0.65	-0.6
4,172,568	-				-0.1
4,172,568	-		HGI48_RS18585	0.69	-2.0
4,172,568	-		HGI48_RS18585	0.69	-0.3
4,172,624	+		HGI48_RS18585	0.73	-1.1
4,172,624	+		HGI48_RS18585	0.73	-1.1
4,172,624	+		HGI48_RS18585	0.73	-2.3
4,172,624	+		HGI48_RS18585	0.73	-0.6
4,172,625	-				+0.3
4,172,625	-				-0.1
4,172,625	-				+0.9
4,172,690	-		HGI48_RS18585	0.78	-1.7
4,172,690	-		HGI48_RS18585	0.78	-1.9
4,172,720	+				-0.7
4,172,720	+		HGI48_RS18585	0.80	+1.4
4,172,721	-				-0.7
4,172,721	-		HGI48_RS18585	0.80	+0.5
4,172,721	-				+1.9
4,172,721	-		HGI48_RS18585	0.80	-1.7
4,172,736	+		HGI48_RS18585	0.81	+0.3
4,172,736	+		HGI48_RS18585	0.81	-0.4
4,172,736	+		HGI48_RS18585	0.81	-1.7
4,172,737	-		HGI48_RS18585	0.81	-0.9
4,172,737	-		HGI48_RS18585	0.81	-1.7
4,172,737	-		HGI48_RS18585	0.81	-1.3
4,172,737	-		HGI48_RS18585	0.81	-0.1
4,172,757	-		HGI48_RS18585	0.83	-2.5
4,172,841	+		HGI48_RS18585	0.89	-0.6
4,172,861	+				-0.1
4,172,861	+				-1.7
4,172,861	+				-1.4
4,172,861	+				-0.1
4,172,862	-				+1.7
4,172,862	-				-0.7
4,172,886	+				-0.9
4,172,907	+				+0.1
4,172,907	+				-1.5
4,172,907	+				-0.5
4,172,908	-				+0.9
4,172,908	-				-1.2
4,172,908	-				+0.3
4,172,908	-				-0.1
4,172,908	-				+0.1
4,172,966	-				-1.1
4,173,024	+				+0.1
4,173,024	+				-0.8
4,173,024	+				-0.1
4,173,024	+				-0.1
4,173,024	+				+0.9
4,173,024	+				+0.4
4,173,024	+				+1.4
4,173,024	+				-1.0
4,173,024	+				-0.5
4,173,024	+				-0.4
4,173,024	+				-0.3
4,173,024	+				+0.9
4,173,024	+				-1.5
4,173,024	+				-1.5
4,173,024	+				-0.1
4,173,024	+				-0.7
4,173,024	+				-1.2
4,173,025	-				-0.1
4,173,025	-				+0.3
4,173,025	-				+0.3
4,173,025	-				-1.3
4,173,025	-				-2.7
4,173,025	-				-1.7
4,173,025	-				-0.6
4,173,025	-				+0.3
4,173,052	+				-0.1
4,173,053	-				-0.4
4,173,053	-				+1.9
4,173,053	-				+1.1
4,173,071	+				-0.7
4,173,101	-				-1.9
4,173,119	-				+0.2
4,173,146	+				+0.0
4,173,153	-				-2.6
4,173,239	+		HGI48_RS18590	0.16	+0.3
4,173,239	+		HGI48_RS18590	0.16	-0.9
4,173,240	-		HGI48_RS18590	0.16	-0.1
4,173,240	-		HGI48_RS18590	0.16	-0.3
4,173,240	-		HGI48_RS18590	0.16	-1.7
4,173,240	-		HGI48_RS18590	0.16	-1.9
4,173,240	-				+1.9
4,173,240	-		HGI48_RS18590	0.16	-1.1
4,173,245	+		HGI48_RS18590	0.16	-0.7
4,173,245	+		HGI48_RS18590	0.16	+0.1
4,173,245	+		HGI48_RS18590	0.16	-1.2
4,173,245	+		HGI48_RS18590	0.16	-0.3
4,173,245	+		HGI48_RS18590	0.16	-0.1
4,173,245	+		HGI48_RS18590	0.16	+0.6
4,173,245	+		HGI48_RS18590	0.16	+0.5
4,173,245	+				+0.9
4,173,246	-		HGI48_RS18590	0.16	+1.6
4,173,246	-		HGI48_RS18590	0.16	+0.9
4,173,246	-		HGI48_RS18590	0.16	-1.3
4,173,246	-		HGI48_RS18590	0.16	-1.9
4,173,246	-		HGI48_RS18590	0.16	-0.9
4,173,246	-		HGI48_RS18590	0.16	-0.9
4,173,265	+		HGI48_RS18590	0.17	+0.5
4,173,265	+		HGI48_RS18590	0.17	-0.7
4,173,266	-		HGI48_RS18590	0.18	-1.1
4,173,266	-		HGI48_RS18590	0.18	+0.4
4,173,266	-		HGI48_RS18590	0.18	-1.7
4,173,266	-		HGI48_RS18590	0.18	-0.5
4,173,266	-		HGI48_RS18590	0.18	-0.5
4,173,266	-		HGI48_RS18590	0.18	-1.1
4,173,309	+		HGI48_RS18590	0.21	-1.6
4,173,400	-		HGI48_RS18590	0.27	-0.9
4,173,423	+		HGI48_RS18590	0.29	+0.0
4,173,423	+		HGI48_RS18590	0.29	-1.9
4,173,423	+		HGI48_RS18590	0.29	+0.4
4,173,424	-		HGI48_RS18590	0.29	-0.9
4,173,461	-		HGI48_RS18590	0.32	-1.1
4,173,476	+		HGI48_RS18590	0.33	+0.1
4,173,476	+		HGI48_RS18590	0.33	-0.4
4,173,476	+		HGI48_RS18590	0.33	+0.9
4,173,476	+		HGI48_RS18590	0.33	+0.1
4,173,477	-		HGI48_RS18590	0.33	-0.1
4,173,477	-				+0.3
4,173,477	-		HGI48_RS18590	0.33	-2.1
4,173,477	-		HGI48_RS18590	0.33	-1.1
4,173,477	-		HGI48_RS18590	0.33	-0.5
4,173,487	+		HGI48_RS18590	0.34	-2.3
4,173,487	+		HGI48_RS18590	0.34	-1.5
4,173,487	+		HGI48_RS18590	0.34	+0.9
4,173,500	+		HGI48_RS18590	0.35	-0.1
4,173,501	-		HGI48_RS18590	0.35	-1.5
4,173,501	-		HGI48_RS18590	0.35	+0.3
4,173,508	+		HGI48_RS18590	0.35	-0.6
4,173,508	+		HGI48_RS18590	0.35	-0.9
4,173,508	+		HGI48_RS18590	0.35	-1.5
4,173,508	+		HGI48_RS18590	0.35	+0.6
4,173,508	+		HGI48_RS18590	0.35	-0.1
4,173,508	+		HGI48_RS18590	0.35	-1.1
4,173,509	-		HGI48_RS18590	0.35	+0.4
4,173,509	-		HGI48_RS18590	0.35	+1.1
4,173,509	-		HGI48_RS18590	0.35	-1.5
4,173,509	-		HGI48_RS18590	0.35	+0.4
4,173,509	-		HGI48_RS18590	0.35	-1.9
4,173,509	-		HGI48_RS18590	0.35	+2.2
4,173,509	-		HGI48_RS18590	0.35	-0.4
4,173,641	+		HGI48_RS18590	0.45	+1.4
4,173,641	+		HGI48_RS18590	0.45	-0.5
4,173,642	-		HGI48_RS18590	0.45	-0.3
4,173,642	-		HGI48_RS18590	0.45	+0.9
4,173,642	-		HGI48_RS18590	0.45	-1.5
4,173,642	-		HGI48_RS18590	0.45	+0.7
4,173,642	-		HGI48_RS18590	0.45	-2.3
4,173,711	+		HGI48_RS18590	0.50	-1.9
4,173,711	+		HGI48_RS18590	0.50	+0.3
4,173,711	+				-0.1
4,173,712	-				-0.7
4,173,712	-		HGI48_RS18590	0.50	-1.4
4,173,712	-		HGI48_RS18590	0.50	-1.1
4,173,729	+		HGI48_RS18590	0.51	-0.5
4,173,729	+		HGI48_RS18590	0.51	-1.7
4,173,729	+		HGI48_RS18590	0.51	-0.3
4,173,729	+		HGI48_RS18590	0.51	-2.5
4,173,729	+		HGI48_RS18590	0.51	-1.9
4,173,730	-		HGI48_RS18590	0.51	+0.9
4,173,730	-		HGI48_RS18590	0.51	-2.0
4,173,730	-		HGI48_RS18590	0.51	+1.4
4,173,730	-				+0.9
4,173,730	-		HGI48_RS18590	0.51	+0.9
4,173,730	-		HGI48_RS18590	0.51	-1.1
4,173,735	+		HGI48_RS18590	0.52	-1.6
4,173,736	-		HGI48_RS18590	0.52	-2.7
4,173,736	-		HGI48_RS18590	0.52	-1.0
4,173,736	-		HGI48_RS18590	0.52	-0.1
4,173,744	+		HGI48_RS18590	0.52	-1.1
4,173,745	-		HGI48_RS18590	0.52	+0.9
4,173,788	-		HGI48_RS18590	0.56	-1.7
4,173,793	-		HGI48_RS18590	0.56	-1.0
4,173,793	-		HGI48_RS18590	0.56	-1.7
4,173,817	+				-0.1
4,173,820	+		HGI48_RS18590	0.58	+0.2
4,173,820	+		HGI48_RS18590	0.58	-0.6
4,173,820	+				-0.7
4,173,820	+		HGI48_RS18590	0.58	+1.2
4,173,820	+		HGI48_RS18590	0.58	+0.4
4,173,820	+		HGI48_RS18590	0.58	-1.1
4,173,820	+		HGI48_RS18590	0.58	-2.2
4,173,821	-		HGI48_RS18590	0.58	-0.9
4,173,821	-		HGI48_RS18590	0.58	+0.9
4,173,821	-		HGI48_RS18590	0.58	-1.3
4,173,903	+		HGI48_RS18590	0.64	-1.0
4,173,904	-				-0.7
4,173,912	+		HGI48_RS18590	0.65	+2.2
4,174,000	+		HGI48_RS18590	0.71	-1.3
4,174,001	-		HGI48_RS18590	0.71	-0.4
4,174,001	-		HGI48_RS18590	0.71	+0.9
4,174,001	-		HGI48_RS18590	0.71	-0.5
4,174,001	-		HGI48_RS18590	0.71	-1.1
4,174,027	+		HGI48_RS18590	0.73	-0.6
4,174,059	+		HGI48_RS18590	0.75	-0.6
4,174,079	+		HGI48_RS18590	0.77	+0.9
4,174,095	+		HGI48_RS18590	0.78	+0.4
4,174,095	+		HGI48_RS18590	0.78	-0.7
4,174,095	+				+0.3
4,174,095	+				+2.4
4,174,096	-		HGI48_RS18590	0.78	+0.5
4,174,217	-		HGI48_RS18590	0.87	-1.9
4,174,217	-		HGI48_RS18590	0.87	-1.1
4,174,217	-				+1.9
4,174,217	-		HGI48_RS18590	0.87	+0.4
4,174,243	+		HGI48_RS18590	0.89	-1.5
4,174,244	-		HGI48_RS18590	0.89	-1.7
4,174,244	-		HGI48_RS18590	0.89	-0.0
4,174,267	+				+1.1
4,174,268	-				+0.6
4,174,268	-				-0.7
4,174,279	-				-1.6
4,174,279	-				-0.5
4,174,329	-				-0.5
4,174,352	+				+0.9
4,174,352	+				-0.1
4,174,352	+				-2.3
4,174,399	+				+0.9
4,174,400	-				+0.1
4,174,416	-				-0.5
4,174,431	+				-1.7
4,174,432	-				+0.6
4,174,432	-				+0.5
4,174,432	-				+0.3
4,174,462	+				+0.4
4,174,463	-				-0.3
4,174,634	+		HGI48_RS18595	0.18	-1.1
4,174,634	+		HGI48_RS18595	0.18	-1.1
4,174,634	+		HGI48_RS18595	0.18	-1.1
4,174,634	+		HGI48_RS18595	0.18	-0.4
4,174,635	-		HGI48_RS18595	0.18	-2.5
4,174,635	-		HGI48_RS18595	0.18	-1.0
4,174,635	-		HGI48_RS18595	0.18	-0.1
4,174,635	-		HGI48_RS18595	0.18	+0.5
4,174,652	+		HGI48_RS18595	0.19	-1.5
4,174,656	-		HGI48_RS18595	0.20	-1.7
4,174,656	-				-0.1
4,174,683	+		HGI48_RS18595	0.22	-0.1
4,174,735	-				-0.1
4,174,840	+		HGI48_RS18595	0.36	+0.9
4,174,842	+				-0.1
4,174,842	+				+0.9
4,174,843	-				-0.7
4,174,920	+		HGI48_RS18595	0.43	-1.7
4,174,945	-		HGI48_RS18595	0.46	-1.0
4,174,956	+		HGI48_RS18595	0.47	-1.9
4,174,956	+		HGI48_RS18595	0.47	-2.9
4,174,957	-		HGI48_RS18595	0.47	-0.7
4,174,965	+		HGI48_RS18595	0.47	-1.7
4,174,966	-		HGI48_RS18595	0.48	-1.0
4,174,966	-				+0.9
4,174,966	-		HGI48_RS18595	0.48	-0.5
4,174,966	-		HGI48_RS18595	0.48	+0.4
4,174,966	-				+1.5
4,175,031	-		HGI48_RS18595	0.53	-1.1
4,175,082	+		HGI48_RS18595	0.58	-0.9
4,175,082	+		HGI48_RS18595	0.58	-0.5
4,175,083	-		HGI48_RS18595	0.58	-1.1
4,175,083	-		HGI48_RS18595	0.58	+1.5
4,175,083	-		HGI48_RS18595	0.58	-1.1
4,175,083	-		HGI48_RS18595	0.58	-0.1
4,175,131	-		HGI48_RS18595	0.62	-0.5
4,175,131	-		HGI48_RS18595	0.62	-0.1
4,175,209	+		HGI48_RS18595	0.69	-0.7
4,175,210	-		HGI48_RS18595	0.69	-1.5
4,175,210	-				-0.1
4,175,210	-		HGI48_RS18595	0.69	-1.7
4,175,312	+		HGI48_RS18595	0.78	-1.1
4,175,347	+		HGI48_RS18595	0.82	-0.1
4,175,348	-		HGI48_RS18595	0.82	-0.4
4,175,384	-		HGI48_RS18595	0.85	+0.9