Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18095

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,059,228	+		HGI48_RS18085	0.64	+0.3
4,059,228	+		HGI48_RS18085	0.64	+0.4
4,059,228	+		HGI48_RS18085	0.64	+0.7
4,059,228	+		HGI48_RS18085	0.64	+0.8
4,059,229	-		HGI48_RS18085	0.64	+1.5
4,059,297	+		HGI48_RS18085	0.69	+0.7
4,059,297	+		HGI48_RS18085	0.69	+0.3
4,059,298	-		HGI48_RS18085	0.69	-0.8
4,059,298	-		HGI48_RS18085	0.69	+0.0
4,059,298	-		HGI48_RS18085	0.69	-1.5
4,059,306	+		HGI48_RS18085	0.70	-1.6
4,059,306	+		HGI48_RS18085	0.70	-0.6
4,059,307	-		HGI48_RS18085	0.70	+0.1
4,059,307	-		HGI48_RS18085	0.70	+1.5
4,059,327	+		HGI48_RS18085	0.71	-1.2
4,059,327	+		HGI48_RS18085	0.71	-0.8
4,059,327	+		HGI48_RS18085	0.71	+0.3
4,059,328	-		HGI48_RS18085	0.71	-2.2
4,059,328	-				-0.8
4,059,468	+		HGI48_RS18085	0.81	-1.2
4,059,591	+		HGI48_RS18085	0.90	-0.6
4,059,591	+		HGI48_RS18085	0.90	-0.7
4,059,592	-				+0.1
4,059,592	-				-1.2
4,059,612	+				-0.5
4,059,612	+				-1.3
4,059,612	+				+0.6
4,059,612	+				+1.8
4,059,612	+				-1.2
4,059,612	+				+0.4
4,059,612	+				+0.6
4,059,612	+				+0.4
4,059,613	-				+0.2
4,059,613	-				-1.2
4,059,613	-				+0.2
4,059,613	-				+0.3
4,059,659	+				-1.2
4,059,659	+				+1.2
4,059,660	-				-0.8
4,059,660	-				-1.2
4,059,678	+				-2.0
4,059,678	+				+0.2
4,059,679	-				-0.4
4,059,679	-				+0.1
4,059,694	+				+1.2
4,059,695	-				+0.2
4,059,742	+				-0.3
4,059,743	-				+1.4
4,059,743	-				-1.8
4,059,755	-				-0.8
4,059,800	+				-1.2
4,059,800	+				-2.2
4,059,801	-				-1.6
4,059,860	+				-0.0
4,059,952	+				+1.8
4,059,952	+		HGI48_RS18090	0.58	-0.2
4,059,952	+		HGI48_RS18090	0.58	+0.8
4,059,953	-		HGI48_RS18090	0.59	+0.6
4,059,953	-		HGI48_RS18090	0.59	+0.5
4,059,953	-		HGI48_RS18090	0.59	-2.9
4,060,017	+				-1.0
4,060,017	+				+0.8
4,060,017	+				-0.4
4,060,017	+				+0.6
4,060,017	+				+0.8
4,060,017	+				-0.1
4,060,017	+				+1.1
4,060,018	-				-0.3
4,060,018	-				-0.4
4,060,018	-				+0.2
4,060,018	-				-0.8
4,060,018	-				-0.4
4,060,018	-				+0.1
4,060,018	-				-0.8
4,060,079	-				-2.2
4,060,083	+				+0.2
4,060,178	+				-1.5
4,060,339	+		HGI48_RS18095	0.13	+1.5
4,060,339	+		HGI48_RS18095	0.13	-0.1
4,060,505	-		HGI48_RS18095	0.23	+0.1
4,060,508	-				+1.6
4,060,521	+		HGI48_RS18095	0.24	+0.4
4,060,521	+		HGI48_RS18095	0.24	-0.4
4,060,522	-		HGI48_RS18095	0.24	-1.8
4,060,522	-		HGI48_RS18095	0.24	-0.7
4,060,522	-		HGI48_RS18095	0.24	-0.5
4,060,522	-		HGI48_RS18095	0.24	-0.8
4,060,522	-		HGI48_RS18095	0.24	-0.2
4,060,599	-		HGI48_RS18095	0.28	-0.2
4,060,599	-		HGI48_RS18095	0.28	+0.5
4,060,716	-		HGI48_RS18095	0.35	+2.2
4,060,828	-				+0.2
4,060,828	-		HGI48_RS18095	0.42	-0.9
4,060,885	-		HGI48_RS18095	0.45	-0.2
4,060,911	+		HGI48_RS18095	0.47	+0.3
4,060,993	+				+1.8
4,061,028	+		HGI48_RS18095	0.54	-1.2
4,061,029	-		HGI48_RS18095	0.54	-0.2
4,061,134	+		HGI48_RS18095	0.60	+0.7
4,061,135	-		HGI48_RS18095	0.60	-2.2
4,061,135	-		HGI48_RS18095	0.60	-0.2
4,061,135	-		HGI48_RS18095	0.60	-0.4
4,061,135	-				+0.8
4,061,135	-		HGI48_RS18095	0.60	+1.8
4,061,204	+		HGI48_RS18095	0.64	-0.8
4,061,204	+		HGI48_RS18095	0.64	-0.2
4,061,204	+		HGI48_RS18095	0.64	-1.2
4,061,205	-		HGI48_RS18095	0.65	+0.0
4,061,205	-		HGI48_RS18095	0.65	-0.4
4,061,374	+		HGI48_RS18095	0.75	-0.8
4,061,384	+		HGI48_RS18095	0.75	+0.1
4,061,384	+				-0.8
4,061,384	+				+0.2
4,061,391	+		HGI48_RS18095	0.76	-1.2
4,061,391	+		HGI48_RS18095	0.76	-0.2
4,061,391	+				+1.8
4,061,391	+		HGI48_RS18095	0.76	-2.2
4,061,394	+		HGI48_RS18095	0.76	-1.0
4,061,436	-		HGI48_RS18095	0.78	+0.1
4,061,436	-		HGI48_RS18095	0.78	-1.0
4,061,436	-		HGI48_RS18095	0.78	-1.0
4,061,509	+		HGI48_RS18095	0.83	-0.2
4,061,509	+		HGI48_RS18095	0.83	+1.4
4,061,509	+		HGI48_RS18095	0.83	-0.2
4,061,545	+		HGI48_RS18095	0.85	-1.0
4,061,545	+		HGI48_RS18095	0.85	+0.1
4,061,814	+				+0.8
4,061,814	+				-1.2
4,061,814	+				-0.9
4,061,815	-				+0.8
4,061,843	+				+0.1
4,061,843	+				+1.2
4,061,849	-				+0.4
4,062,034	+				-0.8
4,062,035	-				-0.8
4,062,035	-				-1.0
4,062,078	+				+0.5
4,062,079	-				+1.6
4,062,079	-				+1.6
4,062,084	+				+0.1
4,062,084	+				-0.5
4,062,084	+				-0.1
4,062,084	+				-1.0
4,062,084	+				+1.4
4,062,084	+				-0.6
4,062,085	-				+0.7
4,062,085	-				+0.4
4,062,085	-				+0.8
4,062,085	-				-0.8
4,062,254	+		HGI48_RS18100	0.25	+0.1
4,062,255	-		HGI48_RS18100	0.25	+0.2
4,062,257	+		HGI48_RS18100	0.26	-0.2
4,062,376	-		HGI48_RS18100	0.38	-0.2
4,062,390	+		HGI48_RS18100	0.39	+0.1
4,062,390	+		HGI48_RS18100	0.39	-2.0
4,062,391	-		HGI48_RS18100	0.39	-0.4
4,062,391	-		HGI48_RS18100	0.39	+0.4
4,062,464	+				+0.8
4,062,464	+		HGI48_RS18100	0.47	-1.8
4,062,464	+		HGI48_RS18100	0.47	+0.1
4,062,465	-		HGI48_RS18100	0.47	-1.3
4,062,465	-		HGI48_RS18100	0.47	+0.6
4,062,468	+		HGI48_RS18100	0.47	-0.4
4,062,469	-		HGI48_RS18100	0.47	+0.4
4,062,469	-		HGI48_RS18100	0.47	-0.4
4,062,469	-		HGI48_RS18100	0.47	-0.8
4,062,469	-		HGI48_RS18100	0.47	-0.2
4,062,528	+		HGI48_RS18100	0.53	-2.0
4,062,528	+		HGI48_RS18100	0.53	+0.8
4,062,648	+		HGI48_RS18100	0.65	-0.2
4,062,648	+		HGI48_RS18100	0.65	+0.0
4,062,648	+		HGI48_RS18100	0.65	+0.1
4,062,649	-		HGI48_RS18100	0.65	-0.5
4,062,649	-				+0.2
4,062,666	+		HGI48_RS18100	0.67	+1.5
4,062,696	+		HGI48_RS18100	0.70	+0.8
4,062,697	-		HGI48_RS18100	0.70	-0.4
4,062,726	+		HGI48_RS18100	0.73	+0.3
4,062,764	+		HGI48_RS18100	0.77	-0.8