Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17800

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,991,406	+		HGI48_RS17795	0.32	+0.7
3,991,407	-		HGI48_RS17795	0.32	+0.6
3,991,455	+		HGI48_RS17795	0.35	+0.3
3,991,455	+		HGI48_RS17795	0.35	+0.2
3,991,462	+		HGI48_RS17795	0.35	-0.0
3,991,463	-		HGI48_RS17795	0.36	+0.6
3,991,495	+		HGI48_RS17795	0.38	-0.7
3,991,495	+		HGI48_RS17795	0.38	+0.1
3,991,495	+		HGI48_RS17795	0.38	-2.4
3,991,495	+		HGI48_RS17795	0.38	+0.3
3,991,496	-		HGI48_RS17795	0.38	-0.3
3,991,496	-		HGI48_RS17795	0.38	-0.8
3,991,496	-		HGI48_RS17795	0.38	+0.0
3,991,496	-		HGI48_RS17795	0.38	-1.2
3,991,525	+		HGI48_RS17795	0.40	-1.8
3,991,525	+		HGI48_RS17795	0.40	+0.8
3,991,525	+		HGI48_RS17795	0.40	+1.2
3,991,525	+		HGI48_RS17795	0.40	+0.1
3,991,526	-				-0.8
3,991,526	-				+0.8
3,991,549	+		HGI48_RS17795	0.42	-0.4
3,991,549	+		HGI48_RS17795	0.42	-1.5
3,991,549	+		HGI48_RS17795	0.42	-1.5
3,991,549	+		HGI48_RS17795	0.42	-0.7
3,991,549	+		HGI48_RS17795	0.42	-1.7
3,991,550	-		HGI48_RS17795	0.42	+0.3
3,991,550	-		HGI48_RS17795	0.42	-0.4
3,991,550	-		HGI48_RS17795	0.42	-0.4
3,991,606	+		HGI48_RS17795	0.46	+0.1
3,991,606	+				-0.8
3,991,606	+		HGI48_RS17795	0.46	+0.1
3,991,606	+		HGI48_RS17795	0.46	-0.1
3,991,606	+		HGI48_RS17795	0.46	-2.0
3,991,606	+		HGI48_RS17795	0.46	-0.0
3,991,606	+		HGI48_RS17795	0.46	+1.3
3,991,606	+		HGI48_RS17795	0.46	-1.4
3,991,606	+		HGI48_RS17795	0.46	-0.7
3,991,607	-				+0.8
3,991,607	-				+2.6
3,991,607	-		HGI48_RS17795	0.46	-1.7
3,991,609	+		HGI48_RS17795	0.46	-1.8
3,991,770	+		HGI48_RS17795	0.57	-2.0
3,991,771	-		HGI48_RS17795	0.57	+0.8
3,991,917	+				-0.2
3,991,917	+		HGI48_RS17795	0.67	+0.2
3,991,918	-		HGI48_RS17795	0.68	-2.0
3,991,987	+		HGI48_RS17795	0.72	-1.1
3,991,987	+		HGI48_RS17795	0.72	-1.2
3,991,987	+		HGI48_RS17795	0.72	+0.3
3,991,987	+		HGI48_RS17795	0.72	+0.1
3,991,988	-		HGI48_RS17795	0.72	-0.2
3,991,990	+		HGI48_RS17795	0.73	-1.8
3,991,990	+		HGI48_RS17795	0.73	-1.8
3,991,990	+				+1.2
3,991,991	-		HGI48_RS17795	0.73	-1.5
3,991,991	-		HGI48_RS17795	0.73	-1.8
3,991,991	-		HGI48_RS17795	0.73	-0.9
3,991,991	-		HGI48_RS17795	0.73	+1.0
3,991,991	-		HGI48_RS17795	0.73	-0.0
3,991,991	-		HGI48_RS17795	0.73	-2.0
3,992,155	+		HGI48_RS17795	0.84	+0.6
3,992,156	-		HGI48_RS17795	0.84	+0.8
3,992,230	+		HGI48_RS17795	0.89	-0.2
3,992,230	+				-0.2
3,992,230	+		HGI48_RS17795	0.89	+0.4
3,992,230	+		HGI48_RS17795	0.89	+1.0
3,992,231	-		HGI48_RS17795	0.90	+0.3
3,992,231	-		HGI48_RS17795	0.90	-0.2
3,992,262	+				-1.8
3,992,262	+				-1.2
3,992,262	+				-1.0
3,992,262	+				-0.1
3,992,262	+				+1.8
3,992,262	+				+0.3
3,992,262	+				-1.1
3,992,262	+				-0.3
3,992,262	+				-0.3
3,992,262	+				-1.2
3,992,263	-				+1.3
3,992,263	-				-2.2
3,992,263	-				+0.2
3,992,263	-				-0.6
3,992,263	-				+0.3
3,992,263	-				+0.3
3,992,263	-				-1.5
3,992,263	-				-0.0
3,992,266	+				+1.5
3,992,266	+				-0.5
3,992,266	+				+1.2
3,992,266	+				+0.1
3,992,266	+				+1.3
3,992,266	+				-2.0
3,992,267	-				+0.3
3,992,267	-				-2.2
3,992,267	-				+0.7
3,992,267	-				-0.5
3,992,267	-				-0.0
3,992,267	-				+1.3
3,992,267	-				+1.4
3,992,267	-				+0.4
3,992,361	-				-0.7
3,992,377	+				+0.5
3,992,377	+				-0.2
3,992,377	+				+0.3
3,992,377	+				-0.4
3,992,378	-				+0.8
3,992,378	-				-0.2
3,992,378	-				-0.0
3,992,378	-				-3.0
3,992,378	-				-0.1
3,992,378	-				-1.5
3,992,378	-				+0.4
3,992,378	-				-1.5
3,992,381	+				-0.8
3,992,381	+				-0.3
3,992,381	+				-1.5
3,992,382	-				+0.4
3,992,382	-				-0.7
3,992,382	-				+0.5
3,992,382	-				-0.4
3,992,382	-				+0.5
3,992,455	-				+0.7
3,992,455	-				+0.2
3,992,464	+				-0.2
3,992,464	+				-0.8
3,992,464	+				+1.4
3,992,465	-				+0.5
3,992,465	-				-0.5
3,992,573	+		HGI48_RS17800	0.16	-0.5
3,992,574	-		HGI48_RS17800	0.16	-1.2
3,992,581	+		HGI48_RS17800	0.17	+0.1
3,992,581	+		HGI48_RS17800	0.17	-2.2
3,992,708	-		HGI48_RS17800	0.27	-0.2
3,992,708	-		HGI48_RS17800	0.27	-0.8
3,992,878	+		HGI48_RS17800	0.42	-0.8
3,992,878	+		HGI48_RS17800	0.42	-0.3
3,993,000	-		HGI48_RS17800	0.52	+0.0
3,993,000	-		HGI48_RS17800	0.52	-0.5
3,993,012	+		HGI48_RS17800	0.53	-0.5
3,993,013	-		HGI48_RS17800	0.53	+0.5
3,993,013	-		HGI48_RS17800	0.53	-0.2
3,993,501	+				+0.1
3,993,502	-				+0.3
3,993,505	+				+0.7
3,993,505	+				+0.5
3,993,506	-				+0.3
3,993,506	-				+0.2
3,993,526	+				-0.4
3,993,526	+				-1.5
3,993,526	+				-0.0
3,993,526	+				+1.6
3,993,527	-				+0.6
3,993,645	+				+1.4
3,993,645	+				-0.7
3,993,646	-				-0.3
3,993,646	-				-0.3
3,993,646	-				-0.0
3,993,646	-				-0.8
3,993,646	-				+0.5
3,993,655	-				+2.0
3,993,663	+				-2.2
3,993,703	+				-0.2
3,993,703	+				-1.5
3,993,704	-				-1.0
3,993,722	+				+0.5
3,993,722	+				-2.2
3,993,734	+				+1.5
3,993,735	-				+1.4
3,993,735	-				-0.8
3,993,834	+		HGI48_RS17805	0.23	+0.5
3,993,861	+		HGI48_RS17805	0.29	-0.6
3,993,861	+		HGI48_RS17805	0.29	+0.0
3,993,961	+		HGI48_RS17805	0.50	-0.8
3,994,177	+				+1.8
3,994,178	-				-0.7
3,994,195	-				+0.5
3,994,202	+				-1.8
3,994,202	+				+1.1
3,994,202	+				+1.2
3,994,203	-				+0.4
3,994,203	-				-1.8
3,994,203	-				+0.8
3,994,367	+		HGI48_RS17810	0.24	-0.1
3,994,499	+		HGI48_RS17810	0.43	-1.0