Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17235

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,862,684	+		HGI48_RS17225	0.88	-0.3
3,862,684	+		HGI48_RS17225	0.88	-1.6
3,862,684	+		HGI48_RS17225	0.88	-2.2
3,862,684	+		HGI48_RS17225	0.88	-2.1
3,862,684	+		HGI48_RS17225	0.88	-0.6
3,862,737	+				-2.1
3,862,737	+				-1.3
3,862,737	+				+0.2
3,862,738	-				-1.2
3,862,738	-				+1.4
3,862,738	-				-1.2
3,862,766	-				-2.6
3,862,766	-				-0.3
3,862,837	+				-0.1
3,862,838	-				+2.1
3,862,854	+				-0.5
3,862,855	-				+0.7
3,862,864	+				-0.6
3,862,865	-				+0.3
3,862,879	+				-0.5
3,862,879	+				+2.5
3,862,880	-				+0.1
3,862,957	+		HGI48_RS17230	0.13	+0.4
3,862,958	-		HGI48_RS17230	0.14	+1.4
3,862,958	-		HGI48_RS17230	0.14	-2.4
3,862,958	-		HGI48_RS17230	0.14	+0.9
3,862,958	-				-0.8
3,863,063	+		HGI48_RS17230	0.64	+0.3
3,863,063	+		HGI48_RS17230	0.64	+0.4
3,863,063	+				+0.2
3,863,063	+		HGI48_RS17230	0.64	-0.3
3,863,064	-		HGI48_RS17230	0.65	+0.6
3,863,064	-		HGI48_RS17230	0.65	-0.7
3,863,064	-		HGI48_RS17230	0.65	+0.0
3,863,064	-		HGI48_RS17230	0.65	+0.5
3,863,093	+		HGI48_RS17230	0.79	-1.3
3,863,093	+		HGI48_RS17230	0.79	-1.6
3,863,093	+		HGI48_RS17230	0.79	+0.2
3,863,094	-				+1.5
3,863,094	-		HGI48_RS17230	0.79	-0.8
3,863,094	-		HGI48_RS17230	0.79	+0.2
3,863,094	-		HGI48_RS17230	0.79	-0.0
3,863,094	-		HGI48_RS17230	0.79	+2.0
3,863,117	+				+0.1
3,863,117	+				-1.1
3,863,118	-				+0.5
3,863,219	+				+0.2
3,863,220	-				-0.1
3,863,225	+				-0.6
3,863,225	+				-0.3
3,863,225	+				+1.3
3,863,225	+				+0.5
3,863,225	+				+1.9
3,863,225	+				-0.3
3,863,226	-				-1.0
3,863,226	-				-0.3
3,863,226	-				-0.4
3,863,226	-				-1.2
3,863,241	+				-0.9
3,863,241	+				+1.1
3,863,241	+				+1.7
3,863,241	+				+0.2
3,863,242	-				+0.0
3,863,242	-				-1.6
3,863,242	-				-1.6
3,863,259	+				-0.2
3,863,259	+				+0.6
3,863,259	+				-0.5
3,863,260	-				-0.6
3,863,260	-				-2.2
3,863,271	-				-0.8
3,863,278	-				-1.6
3,863,278	-				+1.5
3,863,288	+				+0.0
3,863,289	-				+1.0
3,863,295	+				-0.3
3,863,310	+				-0.0
3,863,310	+				+0.2
3,863,310	+				-1.3
3,863,310	+				+0.5
3,863,310	+				+0.4
3,863,310	+				-1.8
3,863,310	+				-1.4
3,863,310	+				-1.1
3,863,310	+				+1.5
3,863,311	-				-1.4
3,863,311	-				+1.3
3,863,311	-				+0.3
3,863,311	-				+0.7
3,863,311	-				+0.7
3,863,313	+				+0.0
3,863,313	+				-1.3
3,863,314	-				-0.8
3,863,331	+				-0.3
3,863,332	-				-1.1
3,863,358	+				+0.4
3,863,358	+				-0.8
3,863,358	+				+0.4
3,863,379	+				-0.7
3,863,379	+				+0.4
3,863,393	-				-1.6
3,863,422	+				+0.6
3,863,429	+				-0.1
3,863,460	+				-1.8
3,863,471	+				+1.7
3,863,471	+				-1.0
3,863,472	-				+1.2
3,863,472	-				-0.0
3,863,478	+				-0.2
3,863,478	+				-1.7
3,863,521	+				+0.7
3,863,522	-				-0.8
3,863,574	+				-0.3
3,863,574	+				-0.3
3,863,574	+				+3.1
3,863,574	+				-0.1
3,863,575	-				+0.4
3,863,575	-				-0.4
3,863,624	+				-1.6
3,863,625	-				-1.5
3,863,625	-				+0.0
3,863,625	-				+0.7
3,863,717	+				+0.0
3,863,717	+				-2.6
3,863,717	+				-0.8
3,863,718	-				-0.1
3,863,718	-				-0.7
3,863,718	-				+0.7
3,863,910	-		HGI48_RS17235	0.33	-0.6
3,863,948	-		HGI48_RS17235	0.38	-1.1
3,864,035	+		HGI48_RS17235	0.50	-1.4
3,864,035	+				+0.2
3,864,036	-		HGI48_RS17235	0.50	+0.7
3,864,059	+		HGI48_RS17235	0.53	-1.6
3,864,102	+				+1.3
3,864,315	+		HGI48_RS17235	0.88	-0.5
3,864,346	-				+0.2
3,864,347	+				-0.8
3,864,347	+				-0.6
3,864,347	+				+0.1
3,864,348	-				-0.3
3,864,348	-				-0.8
3,864,348	-				+1.2
3,864,400	+				+0.7
3,864,400	+				+0.1
3,864,401	-				-2.8
3,864,419	+				-1.3
3,864,419	+				-1.6
3,864,419	+				-0.7
3,864,419	+				-0.5
3,864,419	+				-0.0
3,864,421	+				+0.5
3,864,421	+				-0.5
3,864,421	+				+0.5
3,864,421	+				-0.1
3,864,421	+				-1.3
3,864,421	+				-1.3
3,864,421	+				+0.1
3,864,421	+				-0.3
3,864,422	-				-1.1
3,864,422	-				+0.3
3,864,422	-				+3.5
3,864,422	-				-1.8
3,864,422	-				-0.4
3,864,422	-				+1.2
3,864,422	-				-0.3
3,864,425	+				-0.3
3,864,426	-				+0.5
3,864,426	-				-1.1
3,864,426	-				+1.7
3,864,493	+				+1.2
3,864,494	-				-0.0
3,864,520	+				+4.1
3,864,532	+				-0.3
3,864,574	+				-0.8
3,864,574	+				+1.3
3,864,575	-				-1.6
3,864,575	-				-1.1
3,864,575	-				-0.1
3,864,575	-				-0.1
3,864,576	+				-0.6
3,864,576	+				-1.8
3,864,577	-				+0.2
3,864,577	-				+1.7
3,864,577	-				-0.3
3,864,577	-				+1.1
3,864,577	-				+0.0
3,864,618	-				-1.8
3,864,640	+				+1.4
3,864,641	-				-0.1
3,864,649	+				+0.3
3,864,649	+				+1.6
3,864,649	+				+1.0
3,864,649	+				+0.1
3,864,650	-				-1.8
3,864,650	-				-0.4
3,864,650	-				+0.3
3,864,748	+				-0.4
3,864,748	+				+0.5
3,864,748	+				+0.3
3,864,748	+				-0.8
3,864,749	-				+0.3
3,864,749	-				-1.6
3,864,749	-				-0.6
3,864,749	-				+1.0
3,864,758	+				+0.2
3,864,758	+				-0.8
3,864,758	+				-0.8
3,864,758	+				+0.6
3,864,759	-				-2.1
3,864,764	+				-1.6
3,864,765	-				-0.6
3,864,765	-				-1.1
3,864,767	+				-0.6
3,864,767	+				+0.4
3,864,767	+				-0.8
3,864,767	+				+1.3
3,864,768	-				+1.0
3,864,768	-				-0.3
3,864,768	-				+1.9
3,864,768	-				+0.4
3,864,768	-				+0.5
3,864,769	+				+1.2
3,864,769	+				-0.3
3,864,770	-				-0.8
3,864,874	+		HGI48_RS17240	0.12	+0.6
3,864,875	-		HGI48_RS17240	0.12	-1.8
3,864,899	+		HGI48_RS17240	0.13	-0.7
3,864,899	+		HGI48_RS17240	0.13	-0.4
3,864,900	-		HGI48_RS17240	0.13	+0.3
3,864,900	-		HGI48_RS17240	0.13	-0.7
3,864,933	+		HGI48_RS17240	0.15	-0.3
3,864,934	-				+1.3
3,864,934	-		HGI48_RS17240	0.15	-1.0
3,864,934	-		HGI48_RS17240	0.15	-1.4
3,864,934	-		HGI48_RS17240	0.15	-1.8
3,864,944	+		HGI48_RS17240	0.16	-0.5
3,864,945	-		HGI48_RS17240	0.16	+0.2
3,865,016	+		HGI48_RS17240	0.19	-1.4
3,865,055	-				+1.5
3,865,106	+		HGI48_RS17240	0.24	+1.1
3,865,169	+				+2.3
3,865,269	+		HGI48_RS17240	0.32	+1.5
3,865,367	+		HGI48_RS17240	0.37	-1.1
3,865,367	+		HGI48_RS17240	0.37	+0.2
3,865,370	+				-0.8
3,865,370	+		HGI48_RS17240	0.37	-0.5
3,865,371	-		HGI48_RS17240	0.37	+0.4
3,865,371	-				+0.7
3,865,374	+				+2.3
3,865,374	+		HGI48_RS17240	0.38	+0.7
3,865,375	-		HGI48_RS17240	0.38	+0.7
3,865,402	+		HGI48_RS17240	0.39	+1.1
3,865,402	+				-0.8