Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,690,094	+				+1.1
3,690,103	+				-0.3
3,690,110	+				-0.3
3,690,111	-				-3.0
3,690,111	-				-2.1
3,690,120	-				-0.9
3,690,120	-				-1.6
3,690,126	+				+0.7
3,690,126	+				+2.3
3,690,127	-				+1.0
3,690,134	+				-0.3
3,690,134	+				-0.0
3,690,134	+				-0.9
3,690,134	+				-0.3
3,690,135	-				+0.7
3,690,145	+				-1.9
3,690,145	+				-1.5
3,690,146	-				-0.7
3,690,146	-				-2.3
3,690,146	-				-1.6
3,690,168	+				-1.9
3,690,244	+				-0.5
3,690,244	+				-0.4
3,690,245	-				+1.3
3,690,245	-				+0.7
3,690,291	+				+1.0
3,690,292	-				+0.1
3,690,323	+				+1.0
3,690,415	-				+0.1
3,690,425	+		HGI48_RS16465	0.20	+0.5
3,690,426	-		HGI48_RS16465	0.20	+0.1
3,690,518	+		HGI48_RS16465	0.32	+1.7
3,690,518	+		HGI48_RS16465	0.32	+0.3
3,690,519	-		HGI48_RS16465	0.33	+0.9
3,690,519	-		HGI48_RS16465	0.33	-0.1
3,690,573	-		HGI48_RS16465	0.40	-0.9
3,690,583	-		HGI48_RS16465	0.41	-1.6
3,690,602	+		HGI48_RS16465	0.44	-1.6
3,690,602	+		HGI48_RS16465	0.44	+0.5
3,690,602	+		HGI48_RS16465	0.44	+0.2
3,690,603	-		HGI48_RS16465	0.44	-0.6
3,690,603	-		HGI48_RS16465	0.44	-1.1
3,690,603	-		HGI48_RS16465	0.44	-0.1
3,690,603	-				+0.7
3,690,603	-				+4.2
3,690,603	-		HGI48_RS16465	0.44	-0.4
3,690,603	-		HGI48_RS16465	0.44	-0.3
3,690,603	-		HGI48_RS16465	0.44	+0.0
3,690,640	-		HGI48_RS16465	0.49	+1.3
3,690,716	+		HGI48_RS16465	0.60	+1.6
3,690,752	+		HGI48_RS16465	0.65	-1.3
3,690,752	+		HGI48_RS16465	0.65	-0.6
3,690,782	+				-0.3
3,690,782	+		HGI48_RS16465	0.69	+0.5
3,690,782	+		HGI48_RS16465	0.69	-0.8
3,690,783	-		HGI48_RS16465	0.69	-2.5
3,690,783	-		HGI48_RS16465	0.69	+1.6
3,690,789	+		HGI48_RS16465	0.70	+1.2
3,690,789	+		HGI48_RS16465	0.70	+1.0
3,690,789	+		HGI48_RS16465	0.70	-0.5
3,690,790	-		HGI48_RS16465	0.70	+0.7
3,690,958	+				+0.7
3,690,958	+				-0.9
3,690,958	+				-0.1
3,690,958	+				+2.0
3,690,958	+				+0.7
3,690,958	+				+0.7
3,690,958	+				-1.3
3,690,958	+				+0.1
3,690,958	+				+0.4
3,690,958	+				-0.5
3,690,958	+				-0.4
3,690,958	+				+0.1
3,690,958	+				-0.0
3,690,958	+				-1.9
3,690,958	+				+0.3
3,690,958	+				-0.1
3,690,958	+				-1.3
3,690,959	-				-0.9
3,690,959	-				-0.1
3,690,959	-				+1.7
3,690,959	-				+1.7
3,690,959	-				+1.6
3,690,959	-				+0.9
3,690,959	-				-2.3
3,690,959	-				+1.7
3,691,043	+				-1.0
3,691,115	+				+0.3
3,691,115	+				-1.9
3,691,162	+				-1.1
3,691,162	+				+0.5
3,691,265	+		HGI48_RS16470	0.16	-0.4
3,691,266	-		HGI48_RS16470	0.16	-0.7
3,691,266	-		HGI48_RS16470	0.16	-0.9
3,691,266	-		HGI48_RS16470	0.16	-1.9
3,691,337	+		HGI48_RS16470	0.20	-0.3
3,691,337	+		HGI48_RS16470	0.20	+0.1
3,691,338	-		HGI48_RS16470	0.20	-0.2
3,691,338	-		HGI48_RS16470	0.20	-0.6
3,691,338	-		HGI48_RS16470	0.20	+0.9
3,691,387	+		HGI48_RS16470	0.23	-0.1
3,691,388	-		HGI48_RS16470	0.23	-0.3
3,691,388	-		HGI48_RS16470	0.23	-2.1
3,691,616	-		HGI48_RS16470	0.36	+1.3
3,691,708	+		HGI48_RS16470	0.42	+1.5
3,691,708	+		HGI48_RS16470	0.42	-0.3
3,691,708	+		HGI48_RS16470	0.42	+0.7
3,691,708	+		HGI48_RS16470	0.42	+0.2
3,691,708	+		HGI48_RS16470	0.42	+0.8
3,691,709	-		HGI48_RS16470	0.42	-1.4
3,691,709	-		HGI48_RS16470	0.42	-1.3
3,691,709	-		HGI48_RS16470	0.42	-2.6
3,691,805	-		HGI48_RS16470	0.47	-0.6
3,691,828	+		HGI48_RS16470	0.49	+0.7
3,691,975	+		HGI48_RS16470	0.58	-0.4
3,691,975	+		HGI48_RS16470	0.58	+0.1
3,691,975	+		HGI48_RS16470	0.58	-1.6
3,691,976	-		HGI48_RS16470	0.58	+0.3
3,691,976	-		HGI48_RS16470	0.58	-1.9
3,691,976	-		HGI48_RS16470	0.58	-1.5
3,691,976	-		HGI48_RS16470	0.58	-1.1
3,691,979	+		HGI48_RS16470	0.58	-0.0
3,691,980	-		HGI48_RS16470	0.58	-2.1
3,691,997	+				-0.9
3,691,997	+		HGI48_RS16470	0.59	-0.2
3,692,012	+		HGI48_RS16470	0.60	-0.3
3,692,030	+		HGI48_RS16470	0.61	-0.3
3,692,083	+		HGI48_RS16470	0.64	+0.1
3,692,083	+		HGI48_RS16470	0.64	-0.4
3,692,083	+		HGI48_RS16470	0.64	+0.5
3,692,084	-		HGI48_RS16470	0.64	+0.0
3,692,084	-		HGI48_RS16470	0.64	-1.5
3,692,124	-				+2.1
3,692,124	-				-0.3
3,692,177	+		HGI48_RS16470	0.69	-0.5
3,692,187	+		HGI48_RS16470	0.70	+0.5
3,692,249	+		HGI48_RS16470	0.74	-0.9
3,692,519	-		HGI48_RS16470	0.90	+0.7
3,692,519	-		HGI48_RS16470	0.90	-0.7
3,692,555	-				-0.0
3,692,567	+				-0.6
3,692,567	+				-0.6
3,692,618	+				+1.9
3,692,630	-				-0.3
3,692,670	+				-1.6
3,692,670	+				-0.0
3,692,671	-				+0.1
3,692,671	-				-0.3
3,692,689	+				+0.1
3,692,689	+				+0.2
3,692,689	+				+0.7
3,692,689	+				+1.3
3,692,689	+				-0.3
3,692,689	+				-0.7
3,692,689	+				+0.3
3,692,689	+				-1.0
3,692,689	+				-1.9
3,692,690	-				-1.5
3,692,690	-				-2.0
3,692,690	-				+0.3
3,692,690	-				-1.9
3,692,690	-				-0.3
3,692,690	-				-1.5
3,692,690	-				-0.3
3,692,690	-				+0.1
3,692,690	-				-0.1
3,692,690	-				-0.3
3,692,690	-				-1.6
3,692,690	-				+0.7
3,692,690	-				+2.9
3,692,690	-				+1.3
3,692,696	+				+1.2
3,692,696	+				-1.3
3,692,750	+				-2.0
3,692,751	-				-0.7
3,692,751	-				-2.6
3,692,751	-				-0.0
3,692,774	+				+1.7
3,692,774	+				+0.3
3,692,774	+				-0.9
3,692,775	-				-0.7
3,692,793	+				-1.0
3,692,793	+				+1.7
3,692,793	+				-0.2
3,692,794	-				-1.6
3,692,794	-				+0.3
3,692,799	+				+0.2
3,692,799	+				+0.4
3,692,799	+				-0.0
3,692,799	+				-0.1
3,692,799	+				-1.1
3,692,800	-				+0.7
3,692,800	-				-0.2
3,692,800	-				+1.0
3,692,872	+				-1.3
3,692,872	+				-0.9
3,692,872	+				+0.4
3,692,873	-				-0.0
3,692,918	+				-0.4
3,692,918	+				-2.3
3,692,918	+				+1.4
3,692,918	+				+0.0
3,692,918	+				-0.5
3,692,918	+				-1.4
3,692,918	+				+1.3
3,692,919	-				-1.1
3,692,919	-				+2.7
3,692,919	-				+0.1
3,692,919	-				-0.9
3,692,922	+				-0.1
3,692,922	+				-0.0
3,692,922	+				-1.3
3,692,922	+				+0.2
3,692,922	+				-0.7
3,692,922	+				+0.9
3,692,923	-				-1.4
3,692,923	-				-0.8
3,692,923	-				-0.7
3,693,004	-		HGI48_RS16475	0.14	+1.1
3,693,101	+				+0.7
3,693,102	-		HGI48_RS16475	0.26	+0.6
3,693,102	-		HGI48_RS16475	0.26	-1.3
3,693,102	-				+0.1
3,693,102	-		HGI48_RS16475	0.26	+0.2
3,693,102	-		HGI48_RS16475	0.26	+0.3
3,693,184	+		HGI48_RS16475	0.37	-0.6
3,693,184	+		HGI48_RS16475	0.37	+1.5
3,693,184	+		HGI48_RS16475	0.37	-2.5
3,693,185	-		HGI48_RS16475	0.37	-1.0
3,693,214	+		HGI48_RS16475	0.41	-0.3
3,693,214	+				-0.3
3,693,215	-		HGI48_RS16475	0.41	-0.7
3,693,215	-				+0.1
3,693,215	-		HGI48_RS16475	0.41	-1.9
3,693,236	+		HGI48_RS16475	0.44	-0.5
3,693,236	+		HGI48_RS16475	0.44	-1.1
3,693,236	+		HGI48_RS16475	0.44	+0.5
3,693,236	+		HGI48_RS16475	0.44	+0.9
3,693,237	-				-0.3
3,693,237	-		HGI48_RS16475	0.44	+0.1
3,693,237	-		HGI48_RS16475	0.44	-1.6
3,693,237	-		HGI48_RS16475	0.44	-0.1
3,693,240	+		HGI48_RS16475	0.44	-1.2
3,693,241	-		HGI48_RS16475	0.44	+0.4
3,693,305	+		HGI48_RS16475	0.52	-1.5
3,693,305	+		HGI48_RS16475	0.52	+1.0
3,693,306	-		HGI48_RS16475	0.53	-0.3
3,693,306	-		HGI48_RS16475	0.53	-1.6
3,693,306	-		HGI48_RS16475	0.53	+0.0
3,693,306	-		HGI48_RS16475	0.53	+0.1
3,693,576	+		HGI48_RS16475	0.87	-0.6
3,693,576	+		HGI48_RS16475	0.87	-1.9
3,693,577	-		HGI48_RS16475	0.88	+0.3
3,693,578	+		HGI48_RS16475	0.88	+1.2
3,693,578	+		HGI48_RS16475	0.88	+1.1
3,693,578	+		HGI48_RS16475	0.88	+0.7
3,693,578	+		HGI48_RS16475	0.88	-0.1
3,693,579	-		HGI48_RS16475	0.88	-0.7
3,693,579	-		HGI48_RS16475	0.88	-2.9
3,693,579	-		HGI48_RS16475	0.88	-1.9
3,693,579	-		HGI48_RS16475	0.88	-1.6
3,693,579	-		HGI48_RS16475	0.88	+0.3
3,693,579	-		HGI48_RS16475	0.88	+0.3
3,693,579	-		HGI48_RS16475	0.88	-1.3
3,693,667	+				+0.0
3,693,680	+				-0.1
3,693,681	-				-1.6
3,693,681	-				-1.3
3,693,681	-				+0.2
3,693,681	-				+1.0
3,693,684	+				+0.6
3,693,685	-				-0.3