Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14120

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,163,000	+		HGI48_RS14115	0.33	-1.6
3,163,061	-		HGI48_RS14115	0.37	+0.0
3,163,091	+		HGI48_RS14115	0.39	-1.3
3,163,423	+		HGI48_RS14115	0.63	-1.9
3,163,423	+		HGI48_RS14115	0.63	-1.2
3,163,476	+		HGI48_RS14115	0.67	-1.3
3,163,476	+		HGI48_RS14115	0.67	-0.9
3,163,477	-		HGI48_RS14115	0.67	-1.7
3,163,477	-				-0.6
3,163,531	+		HGI48_RS14115	0.71	-0.7
3,163,532	-		HGI48_RS14115	0.71	-0.6
3,163,560	+		HGI48_RS14115	0.73	+0.0
3,163,560	+		HGI48_RS14115	0.73	+0.0
3,163,786	+		HGI48_RS14115	0.89	-0.8
3,163,786	+		HGI48_RS14115	0.89	-0.9
3,163,787	-		HGI48_RS14115	0.89	-0.6
3,163,787	-		HGI48_RS14115	0.89	+0.0
3,163,923	-				-1.2
3,163,995	+				-0.1
3,163,995	+				-1.5
3,163,995	+				-0.9
3,163,996	-				+2.4
3,163,996	-				-0.6
3,163,996	-				-0.1
3,164,106	+				-0.9
3,164,107	-				-0.6
3,164,149	+				-0.4
3,164,225	+				-1.9
3,164,225	+				+0.7
3,164,226	-				+0.4
3,164,226	-				-1.9
3,164,327	+		HGI48_RS14120	0.12	+0.1
3,164,327	+				+0.8
3,164,429	+				+1.8
3,164,429	+		HGI48_RS14120	0.15	-1.7
3,164,429	+		HGI48_RS14120	0.15	-0.8
3,164,429	+		HGI48_RS14120	0.15	-0.1
3,164,429	+		HGI48_RS14120	0.15	-2.2
3,164,429	+		HGI48_RS14120	0.15	+0.0
3,164,430	-		HGI48_RS14120	0.15	-0.6
3,164,430	-		HGI48_RS14120	0.15	-0.4
3,164,474	+		HGI48_RS14120	0.17	-1.4
3,164,514	-		HGI48_RS14120	0.18	+1.2
3,164,797	+		HGI48_RS14120	0.27	+0.1
3,164,797	+		HGI48_RS14120	0.27	+1.5
3,164,797	+				-0.6
3,164,797	+		HGI48_RS14120	0.27	-0.2
3,164,797	+		HGI48_RS14120	0.27	+0.5
3,164,798	-				-0.2
3,164,798	-		HGI48_RS14120	0.27	-1.2
3,164,798	-		HGI48_RS14120	0.27	+0.0
3,164,798	-		HGI48_RS14120	0.27	+0.8
3,164,798	-				-1.2
3,164,799	+		HGI48_RS14120	0.27	+0.1
3,164,800	-		HGI48_RS14120	0.27	-0.4
3,164,800	-		HGI48_RS14120	0.27	-1.0
3,164,800	-		HGI48_RS14120	0.27	-1.9
3,164,800	-		HGI48_RS14120	0.27	+1.6
3,164,801	+		HGI48_RS14120	0.27	-0.7
3,164,801	+				+1.2
3,164,801	+		HGI48_RS14120	0.27	+0.1
3,164,801	+		HGI48_RS14120	0.27	-0.8
3,164,801	+		HGI48_RS14120	0.27	+0.3
3,164,802	-		HGI48_RS14120	0.27	+0.7
3,164,802	-		HGI48_RS14120	0.27	-0.4
3,164,802	-		HGI48_RS14120	0.27	-1.5
3,164,802	-		HGI48_RS14120	0.27	-0.9
3,164,802	-				+0.4
3,164,843	+		HGI48_RS14120	0.28	-1.9
3,164,843	+		HGI48_RS14120	0.28	-1.6
3,164,844	-				+0.4
3,164,918	+		HGI48_RS14120	0.31	-1.6
3,165,046	-		HGI48_RS14120	0.35	+0.2
3,165,073	-		HGI48_RS14120	0.36	-1.4
3,165,073	-		HGI48_RS14120	0.36	-0.6
3,165,385	-		HGI48_RS14120	0.46	-0.3
3,165,417	+		HGI48_RS14120	0.47	+1.2
3,165,533	+				-1.2
3,165,533	+		HGI48_RS14120	0.50	-1.2
3,165,534	-		HGI48_RS14120	0.50	+0.8
3,165,544	+		HGI48_RS14120	0.51	-0.8
3,166,082	+				+1.2
3,166,082	+		HGI48_RS14120	0.68	-0.7
3,166,082	+				+1.4
3,166,082	+				-0.6
3,166,082	+		HGI48_RS14120	0.68	-1.4
3,166,082	+		HGI48_RS14120	0.68	+0.2
3,166,083	-		HGI48_RS14120	0.68	-0.1
3,166,083	-		HGI48_RS14120	0.68	-0.6
3,166,083	-		HGI48_RS14120	0.68	+0.6
3,166,083	-		HGI48_RS14120	0.68	+0.1
3,166,083	-		HGI48_RS14120	0.68	+0.4
3,166,083	-		HGI48_RS14120	0.68	-0.6
3,166,110	+		HGI48_RS14120	0.68	-1.9
3,166,111	-		HGI48_RS14120	0.68	+1.2
3,166,283	+		HGI48_RS14120	0.74	+1.0
3,166,284	-		HGI48_RS14120	0.74	+0.2
3,166,284	-		HGI48_RS14120	0.74	-0.1
3,166,497	+		HGI48_RS14120	0.81	-0.6
3,166,497	+		HGI48_RS14120	0.81	-1.9
3,166,497	+				+1.2
3,166,498	-		HGI48_RS14120	0.81	-1.3
3,166,498	-		HGI48_RS14120	0.81	+0.1
3,166,519	-		HGI48_RS14120	0.81	-0.4
3,166,519	-		HGI48_RS14120	0.81	+1.6
3,166,582	+		HGI48_RS14120	0.83	-1.9
3,166,582	+		HGI48_RS14120	0.83	+0.9
3,166,583	-				+0.8
3,166,635	+		HGI48_RS14120	0.85	-2.0
3,166,635	+		HGI48_RS14120	0.85	+1.0
3,166,636	-		HGI48_RS14120	0.85	+0.3
3,166,636	-		HGI48_RS14120	0.85	+0.4
3,166,636	-		HGI48_RS14120	0.85	-0.6
3,166,637	+		HGI48_RS14120	0.85	+0.4
3,166,637	+		HGI48_RS14120	0.85	-1.2
3,166,637	+				+1.8
3,166,638	-		HGI48_RS14120	0.85	-0.4
3,166,638	-		HGI48_RS14120	0.85	-2.7
3,166,638	-		HGI48_RS14120	0.85	+1.3
3,166,679	+		HGI48_RS14120	0.86	-1.5
3,166,680	-		HGI48_RS14120	0.86	+0.1
3,167,198	+				+0.2
3,167,199	-				-0.1
3,167,199	-				-0.2
3,167,329	+		HGI48_RS14125	0.19	+0.0
3,167,438	+		HGI48_RS14125	0.28	-0.4
3,167,438	+		HGI48_RS14125	0.28	-0.3
3,167,439	-				+0.8
3,167,439	-		HGI48_RS14125	0.29	-0.3
3,167,533	+		HGI48_RS14125	0.37	+0.8
3,167,635	+		HGI48_RS14125	0.46	-0.0
3,167,636	-		HGI48_RS14125	0.46	+0.2
3,167,753	+		HGI48_RS14125	0.56	-0.6
3,167,753	+		HGI48_RS14125	0.56	+0.0
3,167,753	+		HGI48_RS14125	0.56	+0.6
3,167,754	-		HGI48_RS14125	0.56	+0.4
3,167,754	-		HGI48_RS14125	0.56	-1.1
3,167,755	+		HGI48_RS14125	0.56	+0.4
3,167,755	+		HGI48_RS14125	0.56	+0.7
3,167,755	+		HGI48_RS14125	0.56	-1.2
3,167,755	+		HGI48_RS14125	0.56	+1.8
3,167,756	-		HGI48_RS14125	0.56	-1.9
3,167,756	-				-0.6
3,167,756	-		HGI48_RS14125	0.56	-2.2
3,167,824	+		HGI48_RS14125	0.62	-2.4
3,167,824	+				-1.2
3,167,824	+		HGI48_RS14125	0.62	-0.6
3,167,825	-		HGI48_RS14125	0.62	+1.0
3,167,825	-		HGI48_RS14125	0.62	+1.0
3,167,825	-		HGI48_RS14125	0.62	-2.9
3,167,825	-		HGI48_RS14125	0.62	+0.1
3,167,825	-		HGI48_RS14125	0.62	+1.4
3,167,825	-		HGI48_RS14125	0.62	+0.5
3,167,825	-		HGI48_RS14125	0.62	-2.2
3,167,825	-		HGI48_RS14125	0.62	-1.1
3,167,887	+		HGI48_RS14125	0.68	-1.6
3,167,992	+				-0.6
3,168,029	+		HGI48_RS14125	0.80	-0.4
3,168,029	+				+0.4
3,168,050	+		HGI48_RS14125	0.82	-0.1
3,168,050	+		HGI48_RS14125	0.82	-0.3
3,168,050	+		HGI48_RS14125	0.82	-0.0
3,168,050	+		HGI48_RS14125	0.82	+0.9
3,168,050	+		HGI48_RS14125	0.82	-0.4
3,168,051	-		HGI48_RS14125	0.82	-1.9
3,168,051	-		HGI48_RS14125	0.82	-1.7
3,168,051	-		HGI48_RS14125	0.82	-1.0