Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14000

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,130,605	+				+0.4
3,130,605	+				-1.2
3,130,624	+				-0.8
3,130,624	+				-0.5
3,130,625	-				-0.4
3,130,626	+				+0.2
3,130,626	+				+1.1
3,130,626	+				+0.6
3,130,626	+				-0.0
3,130,626	+				-1.4
3,130,626	+				+0.6
3,130,626	+				+0.4
3,130,626	+				-0.6
3,130,627	-				-0.4
3,130,627	-				-0.9
3,130,627	-				-0.2
3,130,627	-				+0.0
3,130,627	-				-3.6
3,130,627	-				-1.4
3,130,628	+				+1.7
3,130,628	+				-1.2
3,130,628	+				-0.9
3,130,628	+				-0.6
3,130,628	+				-2.2
3,130,628	+				-2.2
3,130,628	+				-1.2
3,130,629	-				+1.0
3,130,629	-				+0.4
3,130,629	-				-1.0
3,130,668	+		HGI48_RS13990	0.17	+0.0
3,130,668	+				+1.0
3,130,668	+		HGI48_RS13990	0.17	+0.9
3,130,668	+		HGI48_RS13990	0.17	+0.8
3,130,669	-		HGI48_RS13990	0.17	-0.3
3,130,669	-		HGI48_RS13990	0.17	-0.7
3,130,669	-		HGI48_RS13990	0.17	-0.2
3,130,670	+		HGI48_RS13990	0.17	+0.4
3,130,671	-		HGI48_RS13990	0.18	+1.0
3,130,671	-		HGI48_RS13990	0.18	-1.6
3,130,683	+		HGI48_RS13990	0.20	+0.1
3,130,683	+		HGI48_RS13990	0.20	-0.4
3,130,683	+		HGI48_RS13990	0.20	+1.7
3,130,684	-		HGI48_RS13990	0.21	-0.6
3,130,688	-		HGI48_RS13990	0.21	+0.3
3,130,688	-		HGI48_RS13990	0.21	+1.4
3,130,712	+		HGI48_RS13990	0.27	-1.8
3,130,712	+		HGI48_RS13990	0.27	-0.2
3,130,713	-		HGI48_RS13990	0.27	-2.7
3,130,822	-		HGI48_RS13990	0.52	+0.4
3,130,857	+		HGI48_RS13990	0.60	+0.4
3,130,857	+		HGI48_RS13990	0.60	+0.7
3,130,857	+		HGI48_RS13990	0.60	-1.6
3,130,857	+		HGI48_RS13990	0.60	+4.2
3,130,858	-		HGI48_RS13990	0.60	-1.4
3,130,858	-		HGI48_RS13990	0.60	+0.4
3,130,858	-		HGI48_RS13990	0.60	-0.3
3,130,858	-		HGI48_RS13990	0.60	-0.5
3,130,858	-		HGI48_RS13990	0.60	-1.1
3,130,858	-				-1.2
3,130,931	+				+2.0
3,130,931	+				+0.8
3,130,932	-		HGI48_RS13990	0.77	-0.8
3,130,934	+		HGI48_RS13990	0.78	+1.2
3,130,964	+				-1.2
3,130,965	-		HGI48_RS13990	0.85	+0.7
3,131,029	+				-0.3
3,131,042	+				-1.6
3,131,042	+				+1.2
3,131,042	+				-0.0
3,131,043	-				+0.3
3,131,043	-				+0.4
3,131,046	+				-0.4
3,131,046	+				-0.3
3,131,127	+				+0.4
3,131,129	+				+0.1
3,131,140	+				+1.4
3,131,193	+		HGI48_RS13995	0.21	-0.2
3,131,193	+		HGI48_RS13995	0.21	-0.3
3,131,193	+		HGI48_RS13995	0.21	+0.2
3,131,350	+				-1.7
3,131,350	+				+0.7
3,131,351	-				-0.6
3,131,362	+				-0.6
3,131,362	+				+1.8
3,131,365	+				-1.6
3,131,365	+				+1.6
3,131,365	+				-1.2
3,131,366	-				-1.6
3,131,366	-				-2.2
3,131,366	-				-0.6
3,131,366	-				-1.2
3,131,366	-				+0.0
3,131,409	-				+0.2
3,131,409	-				-0.3
3,131,457	+				+0.2
3,131,473	+				+2.0
3,131,486	-				-0.6
3,131,486	-				-0.1
3,131,486	-				+2.1
3,131,529	-				+0.0
3,131,540	-				-0.8
3,131,546	+				-0.3
3,131,547	-				+0.1
3,131,547	-				-0.6
3,131,572	+				-0.9
3,131,572	+				-2.2
3,131,572	+				-0.1
3,131,573	-				-0.1
3,131,578	+				+1.9
3,131,579	-				+0.1
3,131,582	+				-0.4
3,131,583	-				+0.5
3,131,583	-				-1.2
3,131,583	-				-2.2
3,131,589	-				+0.9
3,131,643	+				-0.6
3,131,643	+				-0.7
3,131,678	+				-0.8
3,131,679	-				-1.9
3,131,679	-				-1.9
3,131,777	+				+0.4
3,131,777	+				+0.4
3,131,777	+		HGI48_RS14000	0.18	-0.0
3,131,879	+		HGI48_RS14000	0.28	-0.6
3,131,880	-		HGI48_RS14000	0.28	-0.2
3,131,966	+		HGI48_RS14000	0.37	-0.3
3,131,966	+		HGI48_RS14000	0.37	+1.4
3,131,966	+		HGI48_RS14000	0.37	-0.1
3,131,967	-		HGI48_RS14000	0.37	-0.6
3,131,967	-		HGI48_RS14000	0.37	-0.8
3,131,967	-		HGI48_RS14000	0.37	+1.3
3,131,967	-		HGI48_RS14000	0.37	-1.2
3,132,010	+		HGI48_RS14000	0.41	-1.4
3,132,096	+				+0.4
3,132,096	+		HGI48_RS14000	0.50	-0.5
3,132,097	-				+3.0
3,132,188	+				-0.6
3,132,189	-		HGI48_RS14000	0.59	+1.4
3,132,217	+		HGI48_RS14000	0.61	+0.1
3,132,442	+		HGI48_RS14000	0.83	+0.1
3,132,442	+		HGI48_RS14000	0.83	-1.9
3,132,443	-		HGI48_RS14000	0.84	+1.1
3,132,446	+		HGI48_RS14000	0.84	+0.4
3,132,446	+		HGI48_RS14000	0.84	+0.1
3,132,446	+		HGI48_RS14000	0.84	-0.0
3,132,447	-		HGI48_RS14000	0.84	+1.3
3,132,447	-		HGI48_RS14000	0.84	-0.2
3,132,447	-		HGI48_RS14000	0.84	-1.4
3,132,479	-		HGI48_RS14000	0.87	-0.9
3,132,493	-		HGI48_RS14000	0.88	-1.9
3,132,493	-		HGI48_RS14000	0.88	-1.4
3,132,493	-		HGI48_RS14000	0.88	-0.3
3,132,584	-				-0.5
3,132,601	+				+1.6
3,132,602	-				+1.4
3,132,620	-				-2.9
3,132,669	-				+0.1
3,132,678	+				+0.0
3,132,678	+				-0.2
3,132,678	+				+2.0
3,132,678	+				+0.1
3,132,679	-				+0.4
3,132,891	+		HGI48_RS14005	0.29	-2.6
3,132,891	+		HGI48_RS14005	0.29	+0.1
3,132,891	+		HGI48_RS14005	0.29	-0.2
3,132,893	+				+2.2
3,132,893	+		HGI48_RS14005	0.29	-0.6
3,132,893	+		HGI48_RS14005	0.29	-0.2
3,132,893	+		HGI48_RS14005	0.29	+0.0
3,132,893	+		HGI48_RS14005	0.29	+0.1
3,132,893	+		HGI48_RS14005	0.29	+1.1
3,132,893	+		HGI48_RS14005	0.29	-1.0
3,132,894	-		HGI48_RS14005	0.29	-0.6
3,132,894	-		HGI48_RS14005	0.29	+0.9
3,132,894	-		HGI48_RS14005	0.29	-2.4
3,132,894	-				-1.2
3,132,923	+		HGI48_RS14005	0.33	+0.5
3,132,923	+		HGI48_RS14005	0.33	+2.2
3,132,923	+		HGI48_RS14005	0.33	-0.1
3,132,924	-		HGI48_RS14005	0.33	-0.2
3,132,924	-		HGI48_RS14005	0.33	+0.6
3,132,924	-				-0.2
3,132,924	-		HGI48_RS14005	0.33	-1.6
3,132,924	-		HGI48_RS14005	0.33	-0.4
3,132,924	-		HGI48_RS14005	0.33	+0.2
3,132,927	+		HGI48_RS14005	0.33	+0.1
3,132,927	+		HGI48_RS14005	0.33	-0.2
3,132,928	-		HGI48_RS14005	0.33	+0.0
3,132,940	+		HGI48_RS14005	0.35	-1.9
3,133,005	+		HGI48_RS14005	0.43	+0.7
3,133,005	+		HGI48_RS14005	0.43	-0.7
3,133,005	+				+2.6
3,133,006	-				-1.2
3,133,006	-		HGI48_RS14005	0.43	-2.2
3,133,006	-				+0.4
3,133,008	+		HGI48_RS14005	0.44	-0.4
3,133,008	+		HGI48_RS14005	0.44	+0.2
3,133,008	+		HGI48_RS14005	0.44	+0.1
3,133,119	+		HGI48_RS14005	0.58	+0.1
3,133,119	+		HGI48_RS14005	0.58	-0.6
3,133,192	-		HGI48_RS14005	0.67	+0.0
3,133,195	-		HGI48_RS14005	0.67	+0.6
3,133,195	-		HGI48_RS14005	0.67	-0.5
3,133,197	+		HGI48_RS14005	0.68	-0.6
3,133,198	-		HGI48_RS14005	0.68	+0.1
3,133,198	-		HGI48_RS14005	0.68	+0.4
3,133,198	-				-0.2
3,133,293	+		HGI48_RS14005	0.80	-0.4
3,133,324	+		HGI48_RS14005	0.84	-1.4
3,133,324	+		HGI48_RS14005	0.84	+0.3
3,133,325	-		HGI48_RS14005	0.84	+0.9
3,133,325	-		HGI48_RS14005	0.84	-0.1
3,133,325	-		HGI48_RS14005	0.84	+0.7
3,133,425	+				-0.9
3,133,449	+				+0.6
3,133,449	+				-0.7
3,133,449	+				-1.7
3,133,450	-				+0.4
3,133,450	-				+0.8
3,133,450	-				-0.6
3,133,450	-				-0.8
3,133,450	-				-0.4
3,133,450	-				-0.5
3,133,463	+				+0.0
3,133,464	-				+0.0
3,133,466	+				+1.0
3,133,498	+				+1.4
3,133,498	+				-0.6
3,133,498	+				-0.4
3,133,499	-				+0.4
3,133,499	-				-0.4
3,133,502	+				+0.7
3,133,502	+				-0.6
3,133,503	-				-0.1
3,133,503	-				-2.4
3,133,503	-				+0.8
3,133,503	-				-1.0
3,133,526	-				-0.2
3,133,526	-				-1.2
3,133,561	+				+0.2
3,133,561	+				+0.2
3,133,561	+				-0.1
3,133,561	+				-1.3
3,133,582	+				-2.4