Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13570

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,967,300	+		HGI48_RS13560	0.13	-1.2
2,967,301	-		HGI48_RS13560	0.13	-3.0
2,967,464	-		HGI48_RS13560	0.39	+1.2
2,967,478	-		HGI48_RS13560	0.41	-1.8
2,967,486	+		HGI48_RS13560	0.42	-1.4
2,967,487	-		HGI48_RS13560	0.42	+1.0
2,967,509	+		HGI48_RS13560	0.46	-1.4
2,967,509	+		HGI48_RS13560	0.46	+0.1
2,967,510	-				-0.6
2,967,510	-		HGI48_RS13560	0.46	-2.2
2,967,547	+		HGI48_RS13560	0.52	-0.5
2,967,548	-		HGI48_RS13560	0.52	-0.3
2,967,685	+		HGI48_RS13560	0.73	+2.3
2,967,685	+		HGI48_RS13560	0.73	-0.8
2,967,685	+		HGI48_RS13560	0.73	+1.2
2,967,685	+		HGI48_RS13560	0.73	+1.6
2,967,685	+		HGI48_RS13560	0.73	+0.4
2,967,686	-		HGI48_RS13560	0.73	-2.2
2,967,686	-		HGI48_RS13560	0.73	-1.4
2,967,689	+		HGI48_RS13560	0.74	-2.2
2,967,689	+		HGI48_RS13560	0.74	-1.9
2,967,689	+		HGI48_RS13560	0.74	-1.1
2,967,689	+		HGI48_RS13560	0.74	-2.2
2,967,689	+		HGI48_RS13560	0.74	-0.3
2,967,690	-		HGI48_RS13560	0.74	-0.6
2,967,690	-		HGI48_RS13560	0.74	-1.5
2,967,749	-		HGI48_RS13560	0.83	+0.4
2,967,807	+				-1.9
2,967,807	+				-1.2
2,967,808	-				-1.0
2,967,869	+				+0.1
2,967,869	+				-2.4
2,967,869	+				-1.2
2,967,869	+				-0.3
2,967,870	-				-1.2
2,967,870	-				-0.6
2,967,870	-				+1.1
2,967,873	+				-2.1
2,967,874	-				-0.2
2,967,874	-				-2.2
2,967,874	-				-1.9
2,967,874	-				-0.0
2,967,874	-				+0.4
2,967,895	-				-0.3
2,967,933	+		HGI48_RS13565	0.17	-0.6
2,967,941	+		HGI48_RS13565	0.19	-0.3
2,967,972	+		HGI48_RS13565	0.27	-2.9
2,967,972	+		HGI48_RS13565	0.27	-0.0
2,967,973	-				-0.6
2,967,973	-		HGI48_RS13565	0.27	-0.8
2,967,973	-		HGI48_RS13565	0.27	+0.6
2,967,973	-				+1.6
2,967,975	+		HGI48_RS13565	0.27	-1.9
2,967,976	-		HGI48_RS13565	0.28	-2.1
2,967,976	-		HGI48_RS13565	0.28	+0.1
2,967,976	-		HGI48_RS13565	0.28	-1.2
2,967,976	-		HGI48_RS13565	0.28	-0.1
2,967,976	-		HGI48_RS13565	0.28	-0.8
2,968,054	+				-0.6
2,968,054	+		HGI48_RS13565	0.48	-1.7
2,968,054	+		HGI48_RS13565	0.48	-2.1
2,968,055	-		HGI48_RS13565	0.48	+1.5
2,968,055	-		HGI48_RS13565	0.48	+0.1
2,968,055	-		HGI48_RS13565	0.48	-0.6
2,968,055	-		HGI48_RS13565	0.48	-1.6
2,968,184	-				+1.0
2,968,186	+		HGI48_RS13565	0.82	-0.6
2,968,201	-		HGI48_RS13565	0.85	+0.4
2,968,201	-		HGI48_RS13565	0.85	-0.4
2,968,201	-		HGI48_RS13565	0.85	-0.1
2,968,257	+				-2.8
2,968,257	+				-2.4
2,968,258	-				+0.7
2,968,261	+				-1.9
2,968,261	+				-0.7
2,968,261	+				-0.9
2,968,261	+				-1.0
2,968,261	+				-3.1
2,968,262	-				-1.3
2,968,262	-				-1.9
2,968,267	+				-0.1
2,968,268	-				-1.2
2,968,270	+				+1.9
2,968,270	+				-1.6
2,968,270	+				-0.9
2,968,270	+				-2.3
2,968,271	-				+0.4
2,968,293	+				+1.4
2,968,293	+				-0.8
2,968,293	+				-0.3
2,968,293	+				-2.4
2,968,293	+				-0.7
2,968,293	+				-1.8
2,968,293	+				-3.1
2,968,294	-				+0.3
2,968,294	-				-0.0
2,968,294	-				-0.0
2,968,295	+				-1.0
2,968,295	+				-1.0
2,968,295	+				-3.3
2,968,296	-				+0.4
2,968,296	-				+0.8
2,968,296	-				+0.6
2,968,297	+				-0.8
2,968,297	+				+0.3
2,968,297	+				+1.5
2,968,297	+				-0.4
2,968,297	+				-1.6
2,968,297	+				+0.4
2,968,297	+				+0.1
2,968,297	+				-1.6
2,968,297	+				-1.6
2,968,297	+				-2.6
2,968,297	+				-1.7
2,968,297	+				+1.1
2,968,297	+				-0.8
2,968,298	-				-0.0
2,968,298	-				+0.4
2,968,298	-				-0.2
2,968,298	-				-0.4
2,968,298	-				-1.2
2,968,298	-				-0.9
2,968,298	-				-0.8
2,968,298	-				-1.2
2,968,298	-				-0.2
2,968,301	+				-2.4
2,968,301	+				+0.7
2,968,302	-				-0.1
2,968,302	-				+0.2
2,968,302	-				+1.4
2,968,302	-				-0.9
2,968,403	-		HGI48_RS13570	0.11	-2.4
2,968,441	+		HGI48_RS13570	0.14	-0.7
2,968,441	+				-0.2
2,968,443	+				-0.6
2,968,444	-		HGI48_RS13570	0.14	-2.4
2,968,456	+		HGI48_RS13570	0.16	-1.2
2,968,502	+		HGI48_RS13570	0.20	-1.9
2,968,509	-				-1.2
2,968,556	+		HGI48_RS13570	0.25	-0.3
2,968,556	+		HGI48_RS13570	0.25	-0.2
2,968,556	+		HGI48_RS13570	0.25	-2.0
2,968,557	-		HGI48_RS13570	0.25	-0.1
2,968,557	-		HGI48_RS13570	0.25	-1.0
2,968,557	-		HGI48_RS13570	0.25	+0.1
2,968,608	-		HGI48_RS13570	0.30	-2.2
2,968,614	+		HGI48_RS13570	0.31	+0.1
2,968,614	+		HGI48_RS13570	0.31	-2.2
2,968,664	-		HGI48_RS13570	0.35	-0.1
2,968,664	-		HGI48_RS13570	0.35	-2.0
2,968,664	-		HGI48_RS13570	0.35	-1.2
2,968,665	+		HGI48_RS13570	0.35	-0.2
2,968,665	+		HGI48_RS13570	0.35	-2.6
2,968,665	+		HGI48_RS13570	0.35	+0.1
2,968,665	+		HGI48_RS13570	0.35	-0.9
2,968,666	-		HGI48_RS13570	0.36	-0.6
2,968,666	-		HGI48_RS13570	0.36	-2.4
2,968,666	-		HGI48_RS13570	0.36	-0.6
2,968,666	-		HGI48_RS13570	0.36	-2.4
2,968,714	+		HGI48_RS13570	0.40	-0.8
2,968,715	-		HGI48_RS13570	0.40	-0.8
2,968,715	-		HGI48_RS13570	0.40	-2.6
2,968,729	+				-0.6
2,968,730	-		HGI48_RS13570	0.42	-1.2
2,968,757	-		HGI48_RS13570	0.44	-1.2
2,968,771	+		HGI48_RS13570	0.45	-2.0
2,968,771	+		HGI48_RS13570	0.45	-1.6
2,968,771	+		HGI48_RS13570	0.45	+2.9
2,968,772	-				-1.2
2,968,772	-		HGI48_RS13570	0.46	-1.6
2,968,828	+				-0.6
2,968,840	+		HGI48_RS13570	0.52	-2.2
2,968,913	-				+1.0
2,968,989	+		HGI48_RS13570	0.66	+0.6
2,968,989	+				+1.0
2,968,990	-		HGI48_RS13570	0.66	-3.0
2,968,990	-		HGI48_RS13570	0.66	-0.8
2,968,990	-		HGI48_RS13570	0.66	-0.6
2,969,068	+		HGI48_RS13570	0.74	-3.6
2,969,214	-		HGI48_RS13570	0.88	-2.9
2,969,272	+				+0.0
2,969,272	+				-1.2
2,969,272	+				+2.0
2,969,272	+				+0.2
2,969,273	-				-1.7
2,969,273	-				-2.0
2,969,273	-				-1.2
2,969,275	+				+0.7
2,969,275	+				-2.9
2,969,324	+				-1.6
2,969,324	+				+3.2
2,969,324	+				-0.1
2,969,324	+				+0.3
2,969,325	-				+1.4
2,969,325	-				-0.6
2,969,327	+				-0.1
2,969,327	+				-0.4
2,969,338	+				-3.2
2,969,339	-				-1.7
2,969,345	+				+0.7
2,969,346	-				+0.9
2,969,346	-				-0.6
2,969,437	+		HGI48_RS13575	0.11	+0.4
2,969,438	-		HGI48_RS13575	0.11	-1.6
2,969,451	+		HGI48_RS13575	0.12	-3.7
2,969,496	+		HGI48_RS13575	0.17	-0.5
2,969,518	-		HGI48_RS13575	0.20	+0.7
2,969,590	+		HGI48_RS13575	0.28	-1.5
2,969,590	+		HGI48_RS13575	0.28	+0.0
2,969,590	+		HGI48_RS13575	0.28	-0.6
2,969,739	+		HGI48_RS13575	0.45	-1.2
2,969,740	-		HGI48_RS13575	0.45	+1.4
2,969,740	-		HGI48_RS13575	0.45	-1.5
2,969,740	-		HGI48_RS13575	0.45	+0.9
2,969,769	+		HGI48_RS13575	0.49	-0.9
2,969,769	+		HGI48_RS13575	0.49	-0.9
2,969,786	+		HGI48_RS13575	0.51	-0.3
2,969,786	+		HGI48_RS13575	0.51	-0.6
2,969,787	-		HGI48_RS13575	0.51	-1.6
2,969,844	+		HGI48_RS13575	0.57	-1.2
2,969,859	-		HGI48_RS13575	0.59	-1.4
2,969,952	+		HGI48_RS13575	0.70	-0.1
2,969,952	+		HGI48_RS13575	0.70	-0.8
2,969,953	-		HGI48_RS13575	0.70	-1.9
2,969,953	-		HGI48_RS13575	0.70	+1.4
2,970,003	-		HGI48_RS13575	0.75	-1.2
2,970,021	+				-0.2
2,970,057	-		HGI48_RS13575	0.82	-1.4
2,970,057	-		HGI48_RS13575	0.82	+0.4
2,970,057	-		HGI48_RS13575	0.82	-1.9
2,970,072	+		HGI48_RS13575	0.83	+0.4
2,970,072	+		HGI48_RS13575	0.83	-1.0
2,970,104	+		HGI48_RS13575	0.87	-2.0
2,970,108	+		HGI48_RS13575	0.88	+1.4
2,970,108	+		HGI48_RS13575	0.88	-1.8
2,970,108	+		HGI48_RS13575	0.88	+1.1
2,970,108	+		HGI48_RS13575	0.88	-0.8
2,970,108	+		HGI48_RS13575	0.88	-0.9
2,970,108	+		HGI48_RS13575	0.88	+0.6
2,970,108	+		HGI48_RS13575	0.88	-0.8
2,970,109	-				-0.6
2,970,109	-		HGI48_RS13575	0.88	-2.4
2,970,109	-				-0.6
2,970,109	-		HGI48_RS13575	0.88	-2.2
2,970,174	+				-1.9
2,970,175	-				-2.9
2,970,180	+				-0.6
2,970,180	+				-1.2
2,970,180	+				-0.1
2,970,180	+				-0.2
2,970,181	-				-2.6
2,970,181	-				-0.3
2,970,181	-				-0.6
2,970,181	-				+0.0
2,970,181	-				+0.2
2,970,216	+				-1.9
2,970,238	+				+0.0
2,970,275	-				-0.2
2,970,276	+				-1.9
2,970,276	+				-0.2
2,970,276	+				+0.0
2,970,276	+				-0.4
2,970,276	+				+1.2
2,970,276	+				+0.1
2,970,276	+				+0.4
2,970,276	+				-1.2
2,970,277	-				+0.8
2,970,277	-				+0.0
2,970,277	-				+0.0
2,970,277	-				-0.6
2,970,277	-				-0.2
2,970,277	-				+0.3
2,970,277	-				-0.6
2,970,277	-				-0.9
2,970,280	+				+1.3
2,970,280	+				-2.2
2,970,281	-				+1.0
2,970,281	-				-0.3
2,970,281	-				+1.9
2,970,281	-				+1.4
2,970,281	-				+1.2