Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12765

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,784,678	+		HGI48_RS12750	0.64	-2.2
2,784,679	-		HGI48_RS12750	0.64	-0.9
2,784,736	+		HGI48_RS12750	0.80	+0.4
2,784,820	+				-0.2
2,784,822	+				+1.7
2,784,831	-				-2.2
2,784,841	+				-0.4
2,784,842	-				+0.5
2,784,842	-				+0.0
2,784,843	+				-0.2
2,784,843	+				-0.0
2,784,844	-				-0.1
2,784,844	-				-0.6
2,784,844	-				+0.6
2,784,844	-				-0.4
2,784,851	-				+0.4
2,784,851	-				-0.2
2,784,852	+				+0.6
2,784,852	+				-1.4
2,784,852	+				-1.4
2,784,852	+				-0.4
2,784,853	-				+0.5
2,784,853	-				-0.1
2,784,853	-				+0.8
2,784,853	-				-0.2
2,784,853	-				+1.6
2,784,853	-				-0.0
2,784,921	-				-0.6
2,784,966	+				+0.1
2,784,967	-				+0.1
2,784,967	-				-0.9
2,784,967	-				+3.9
2,784,971	-				+0.4
2,785,006	+		HGI48_RS12755	0.24	-2.2
2,785,006	+		HGI48_RS12755	0.24	+1.4
2,785,006	+		HGI48_RS12755	0.24	-0.9
2,785,007	-		HGI48_RS12755	0.24	-0.4
2,785,008	+				-1.2
2,785,008	+		HGI48_RS12755	0.24	-0.8
2,785,008	+		HGI48_RS12755	0.24	+1.4
2,785,008	+		HGI48_RS12755	0.24	-0.5
2,785,009	-		HGI48_RS12755	0.25	-1.8
2,785,009	-				-1.2
2,785,009	-		HGI48_RS12755	0.25	-0.9
2,785,009	-		HGI48_RS12755	0.25	-2.1
2,785,009	-		HGI48_RS12755	0.25	+0.2
2,785,033	-		HGI48_RS12755	0.34	+0.2
2,785,033	-		HGI48_RS12755	0.34	+1.0
2,785,054	+		HGI48_RS12755	0.42	+0.0
2,785,055	-		HGI48_RS12755	0.43	-0.6
2,785,055	-		HGI48_RS12755	0.43	-0.8
2,785,065	+		HGI48_RS12755	0.47	+1.0
2,785,065	+		HGI48_RS12755	0.47	-0.9
2,785,065	+		HGI48_RS12755	0.47	+0.2
2,785,065	+		HGI48_RS12755	0.47	-0.6
2,785,066	-				-0.2
2,785,066	-		HGI48_RS12755	0.47	-0.5
2,785,066	-		HGI48_RS12755	0.47	+0.2
2,785,066	-		HGI48_RS12755	0.47	-0.4
2,785,096	+				+3.2
2,785,158	-		HGI48_RS12755	0.83	-0.1
2,785,158	-		HGI48_RS12755	0.83	-1.9
2,785,182	+				+0.6
2,785,182	+				-0.5
2,785,183	-				+0.4
2,785,183	-				+1.8
2,785,196	+				+2.4
2,785,196	+				-1.4
2,785,196	+				-0.1
2,785,197	-				-1.9
2,785,197	-				+1.3
2,785,469	-				+0.4
2,785,469	-				+0.4
2,785,474	+				-1.2
2,785,474	+				+0.4
2,785,474	+				+0.8
2,785,474	+				-1.8
2,785,475	-				+0.6
2,785,475	-				+1.6
2,785,475	-				-0.0
2,785,514	+				+0.5
2,785,514	+				+1.4
2,785,568	+				+0.8
2,785,568	+				-0.6
2,785,568	+				+1.7
2,785,568	+				+0.1
2,785,569	-				-1.6
2,785,569	-				+0.6
2,785,569	-				-0.7
2,785,569	-				-0.4
2,785,580	+				-1.1
2,785,581	-				-2.4
2,785,581	-				-0.4
2,785,595	+				-0.0
2,785,596	-				+0.9
2,785,596	-				+1.0
2,785,650	+				-1.6
2,785,651	-				-0.0
2,785,651	-				+0.4
2,785,654	+				-0.1
2,785,655	-				+0.5
2,785,655	-				+1.0
2,785,655	-				-0.4
2,785,775	+		HGI48_RS12765	0.16	+2.0
2,785,775	+		HGI48_RS12765	0.16	-1.1
2,785,776	-		HGI48_RS12765	0.16	+1.3
2,785,789	-		HGI48_RS12765	0.17	+0.4
2,785,812	+		HGI48_RS12765	0.20	+0.3
2,785,813	-		HGI48_RS12765	0.20	+0.3
2,785,846	-				+3.0
2,785,909	-		HGI48_RS12765	0.31	+0.9
2,785,927	-		HGI48_RS12765	0.34	-2.6
2,785,927	-		HGI48_RS12765	0.34	-0.2
2,785,935	+		HGI48_RS12765	0.35	-1.2
2,785,935	+		HGI48_RS12765	0.35	+1.2
2,785,980	+		HGI48_RS12765	0.40	+0.3
2,785,980	+		HGI48_RS12765	0.40	-1.9
2,785,980	+		HGI48_RS12765	0.40	-0.9
2,785,980	+				+2.5
2,785,982	+		HGI48_RS12765	0.40	+1.0
2,785,982	+		HGI48_RS12765	0.40	+1.2
2,785,982	+		HGI48_RS12765	0.40	-0.0
2,785,982	+				-1.2
2,785,983	-		HGI48_RS12765	0.40	-0.8
2,785,983	-		HGI48_RS12765	0.40	+0.4
2,785,983	-		HGI48_RS12765	0.40	-0.8
2,785,983	-		HGI48_RS12765	0.40	-0.9
2,785,983	-		HGI48_RS12765	0.40	-1.0
2,786,093	-		HGI48_RS12765	0.53	+0.2
2,786,158	-		HGI48_RS12765	0.61	+1.2
2,786,202	+		HGI48_RS12765	0.66	+1.8
2,786,202	+		HGI48_RS12765	0.66	-1.4
2,786,202	+		HGI48_RS12765	0.66	-0.0
2,786,202	+		HGI48_RS12765	0.66	-0.2
2,786,203	-		HGI48_RS12765	0.66	-0.4
2,786,203	-		HGI48_RS12765	0.66	-2.4
2,786,203	-		HGI48_RS12765	0.66	-0.6
2,786,203	-				+1.8
2,786,218	-		HGI48_RS12765	0.68	-0.8
2,786,269	+		HGI48_RS12765	0.74	-0.6
2,786,269	+		HGI48_RS12765	0.74	+0.6
2,786,269	+		HGI48_RS12765	0.74	+1.1
2,786,269	+		HGI48_RS12765	0.74	-0.5
2,786,269	+		HGI48_RS12765	0.74	+0.7
2,786,270	-		HGI48_RS12765	0.74	+0.4
2,786,310	+		HGI48_RS12765	0.79	-1.6
2,786,355	+		HGI48_RS12765	0.84	+0.6
2,786,356	-		HGI48_RS12765	0.84	-1.4
2,786,356	-		HGI48_RS12765	0.84	+0.2
2,786,379	+				+0.8
2,786,380	-		HGI48_RS12765	0.87	+0.8
2,786,394	+				+3.7
2,786,464	+				-0.4
2,786,475	+				+0.4
2,786,512	+				+0.6
2,786,513	-				-0.9
2,786,513	-				-0.6
2,786,566	+				+2.3
2,786,586	-				+0.2
2,786,586	-				+1.1
2,786,638	-				+1.5
2,786,719	+				+0.0
2,786,750	+				-3.1
2,786,751	-				+0.4
2,786,752	+				-0.3
2,786,757	+				+0.1
2,786,757	+				+0.1
2,786,758	-				+0.8
2,786,829	+		HGI48_RS12770	0.16	-2.1
2,786,869	+		HGI48_RS12770	0.26	-1.6
2,786,993	-		HGI48_RS12770	0.59	-1.6
2,786,993	-		HGI48_RS12770	0.59	-0.6
2,787,049	+		HGI48_RS12770	0.74	+0.4
2,787,049	+		HGI48_RS12770	0.74	-0.4
2,787,050	-		HGI48_RS12770	0.75	-0.2
2,787,050	-		HGI48_RS12770	0.75	+0.1
2,787,057	+		HGI48_RS12770	0.77	-1.9
2,787,057	+		HGI48_RS12770	0.77	-0.6
2,787,058	-		HGI48_RS12770	0.77	-0.8
2,787,072	-		HGI48_RS12770	0.81	-0.0
2,787,163	-				+0.4
2,787,193	+				-1.6
2,787,270	+				-1.4
2,787,270	+				-1.9
2,787,275	+				+1.4
2,787,354	-				-0.4
2,787,420	+		HGI48_RS12775	0.21	+0.4
2,787,420	+		HGI48_RS12775	0.21	-0.1
2,787,420	+		HGI48_RS12775	0.21	-0.0
2,787,426	-				+0.8
2,787,426	-		HGI48_RS12775	0.22	-1.9
2,787,456	+		HGI48_RS12775	0.29	+1.4
2,787,456	+		HGI48_RS12775	0.29	-2.2
2,787,456	+		HGI48_RS12775	0.29	-0.4
2,787,456	+				+1.4
2,787,456	+		HGI48_RS12775	0.29	-0.3
2,787,457	-		HGI48_RS12775	0.29	+0.4
2,787,458	+		HGI48_RS12775	0.30	+0.6
2,787,490	+		HGI48_RS12775	0.37	+0.1
2,787,490	+		HGI48_RS12775	0.37	+0.4