Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12260

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,673,524	-				+0.6
2,673,528	+				-0.6
2,673,576	+				-0.9
2,673,604	+				-1.4
2,673,604	+				-2.2
2,673,604	+				-0.6
2,673,605	-				-2.6
2,673,608	+				+0.1
2,673,608	+				-1.4
2,673,608	+				-1.2
2,673,608	+				+0.4
2,673,608	+				-0.6
2,673,619	-				-0.9
2,673,628	-				-0.6
2,673,750	+				-2.2
2,673,750	+				+0.4
2,673,750	+				-1.2
2,673,750	+				-2.0
2,673,750	+				-0.6
2,673,751	-				-2.0
2,673,751	-				-0.6
2,673,751	-				+0.9
2,673,751	-				+0.5
2,673,755	+				-1.2
2,673,755	+				-1.2
2,673,756	-				-1.0
2,673,756	-				+0.2
2,673,757	+				-0.4
2,673,757	+				-0.6
2,673,758	-				+0.3
2,673,778	-				+1.0
2,673,781	+				-2.0
2,673,781	+				-0.3
2,673,782	-				-0.4
2,673,784	-				-0.4
2,673,808	+				-0.6
2,673,823	+				-1.2
2,673,823	+				-1.0
2,673,824	-				-1.2
2,673,853	+				+0.3
2,673,854	-				-0.6
2,673,883	-				-0.4
2,673,894	+				-0.8
2,673,895	-				-0.1
2,673,895	-				+0.6
2,673,898	+				+0.3
2,673,899	-				+0.8
2,673,899	-				-0.2
2,673,899	-				-0.6
2,673,899	-				+2.2
2,673,906	-				-1.1
2,674,075	+				-0.1
2,674,082	+				+1.2
2,674,082	+				-0.2
2,674,082	+				-0.1
2,674,082	+				+1.7
2,674,082	+				-0.5
2,674,083	-				-1.6
2,674,083	-				-0.9
2,674,083	-				-0.4
2,674,083	-				+0.2
2,674,083	-				-1.6
2,674,085	-				-1.1
2,674,099	+				+0.1
2,674,100	-				+0.0
2,674,100	-				+1.5
2,674,152	+				-0.6
2,674,152	+				-1.2
2,674,152	+				-0.4
2,674,152	+				+0.8
2,674,152	+				-1.0
2,674,152	+				+0.4
2,674,153	-				+1.5
2,674,153	-				+0.4
2,674,156	+				-0.0
2,674,156	+				-0.6
2,674,156	+				+0.6
2,674,157	-				-1.2
2,674,157	-				+1.8
2,674,157	-				-0.6
2,674,157	-				+0.2
2,674,157	-				-0.6
2,674,158	+				-2.2
2,674,158	+				-3.2
2,674,158	+				+0.9
2,674,158	+				-0.8
2,674,158	+				+0.9
2,674,158	+				+0.2
2,674,159	-				-0.3
2,674,159	-				-2.0
2,674,160	+				+0.6
2,674,160	+				+2.5
2,674,165	+				+0.5
2,674,169	+				-0.1
2,674,246	+				+0.6
2,674,273	+				+0.7
2,674,273	+				+0.9
2,674,274	-				-1.6
2,674,282	+				-0.3
2,674,282	+				-1.2
2,674,283	-				-0.9
2,674,284	+				-0.1
2,674,285	-				+0.9
2,674,285	-				-0.6
2,674,285	-				+1.1
2,674,285	-				+0.0
2,674,285	-				-0.4
2,674,304	+				+1.4
2,674,304	+				-2.2
2,674,304	+				+0.8
2,674,304	+				-0.4
2,674,382	-				-1.4
2,674,434	+				+1.6
2,674,441	+				-1.0
2,674,441	+				-1.2
2,674,446	+				-0.9
2,674,459	-				-1.4
2,674,506	+		HGI48_RS12260	0.10	-0.9
2,674,515	-		HGI48_RS12260	0.11	-1.1
2,674,515	-		HGI48_RS12260	0.11	-1.2
2,674,678	+		HGI48_RS12260	0.21	-1.2
2,674,680	+				+0.4
2,674,680	+		HGI48_RS12260	0.21	-0.4
2,674,680	+				-1.2
2,674,680	+		HGI48_RS12260	0.21	-0.5
2,674,680	+		HGI48_RS12260	0.21	+0.1
2,674,680	+		HGI48_RS12260	0.21	-3.0
2,674,680	+		HGI48_RS12260	0.21	-0.3
2,674,680	+		HGI48_RS12260	0.21	-0.9
2,674,681	-		HGI48_RS12260	0.22	+1.2
2,674,681	-		HGI48_RS12260	0.22	-2.0
2,674,681	-		HGI48_RS12260	0.22	-0.4
2,674,681	-		HGI48_RS12260	0.22	-0.3
2,674,681	-		HGI48_RS12260	0.22	-0.1
2,674,681	-		HGI48_RS12260	0.22	-0.5
2,674,681	-		HGI48_RS12260	0.22	+0.0
2,674,681	-				+1.9
2,674,681	-		HGI48_RS12260	0.22	-0.1
2,674,681	-		HGI48_RS12260	0.22	-0.1
2,674,735	+		HGI48_RS12260	0.25	-0.4
2,674,735	+		HGI48_RS12260	0.25	-2.6
2,674,735	+		HGI48_RS12260	0.25	-3.2
2,674,736	-				+1.4
2,674,761	+		HGI48_RS12260	0.27	-1.2
2,674,775	+		HGI48_RS12260	0.28	-0.5
2,674,775	+				-1.2
2,674,775	+				+0.8
2,674,833	+				-1.2
2,674,834	-		HGI48_RS12260	0.31	-1.6
2,674,888	+		HGI48_RS12260	0.35	-1.6
2,674,889	-		HGI48_RS12260	0.35	-1.4
2,674,895	+		HGI48_RS12260	0.35	+0.5
2,674,936	-		HGI48_RS12260	0.38	-0.5
2,674,982	+		HGI48_RS12260	0.41	-0.4
2,674,982	+		HGI48_RS12260	0.41	-0.2
2,674,982	+				-0.6
2,674,983	-		HGI48_RS12260	0.41	-0.4
2,675,235	+		HGI48_RS12260	0.57	-1.4
2,675,235	+		HGI48_RS12260	0.57	-0.2
2,675,236	-		HGI48_RS12260	0.57	+0.4
2,675,236	-				-1.2
2,675,291	+		HGI48_RS12260	0.61	-0.8
2,675,291	+		HGI48_RS12260	0.61	-2.1
2,675,292	-		HGI48_RS12260	0.61	-2.3
2,675,292	-		HGI48_RS12260	0.61	-0.4
2,675,308	-		HGI48_RS12260	0.62	+0.3
2,675,556	+		HGI48_RS12260	0.78	-0.3
2,675,619	-				+1.4
2,675,690	+				-0.6
2,675,691	-		HGI48_RS12260	0.87	+0.7
2,675,694	+		HGI48_RS12260	0.87	-0.1
2,675,694	+		HGI48_RS12260	0.87	-1.0
2,675,695	-		HGI48_RS12260	0.87	-0.2
2,675,695	-		HGI48_RS12260	0.87	-2.0
2,675,695	-		HGI48_RS12260	0.87	+0.6
2,675,852	+				+0.6
2,675,853	-				-0.9
2,675,964	-				+0.4
2,676,028	-		HGI48_RS12265	0.22	+0.7
2,676,028	-		HGI48_RS12265	0.22	+1.9
2,676,028	-		HGI48_RS12265	0.22	+0.4
2,676,028	-		HGI48_RS12265	0.22	-2.2
2,676,028	-		HGI48_RS12265	0.22	-1.9
2,676,028	-		HGI48_RS12265	0.22	-1.6
2,676,028	-		HGI48_RS12265	0.22	-2.2
2,676,029	+		HGI48_RS12265	0.22	-0.5
2,676,029	+		HGI48_RS12265	0.22	-0.5
2,676,030	-		HGI48_RS12265	0.23	-0.0
2,676,030	-		HGI48_RS12265	0.23	-0.6
2,676,156	+		HGI48_RS12265	0.65	-0.6
2,676,156	+				+0.4
2,676,277	+				-0.6
2,676,278	-				-2.2
2,676,278	-				+0.5
2,676,278	-				-2.0
2,676,299	+				+0.8
2,676,300	-				-0.4
2,676,347	+				-0.4
2,676,447	+				+0.2
2,676,448	-				+0.5
2,676,451	+				-0.6
2,676,491	+				+0.0
2,676,494	+				-0.6
2,676,616	-				-0.3
2,676,616	-				-0.6
2,676,622	+				-0.0
2,676,622	+				+2.4
2,676,622	+				-0.9
2,676,623	-				-1.4
2,676,623	-				+2.4
2,676,623	-				-1.8
2,676,660	+				+0.6
2,676,660	+				+0.2
2,676,660	+				+1.2
2,676,661	-		HGI48_RS12270	0.10	-0.1
2,676,662	+		HGI48_RS12270	0.10	+0.9
2,676,663	-		HGI48_RS12270	0.10	-0.5
2,676,663	-		HGI48_RS12270	0.10	-1.6
2,676,663	-		HGI48_RS12270	0.10	-0.8
2,676,702	+		HGI48_RS12270	0.16	-2.0
2,676,702	+		HGI48_RS12270	0.16	-1.6
2,676,822	-		HGI48_RS12270	0.33	+0.1
2,676,890	+		HGI48_RS12270	0.43	+0.7
2,676,891	-		HGI48_RS12270	0.44	-0.5
2,676,891	-		HGI48_RS12270	0.44	-0.0
2,676,891	-		HGI48_RS12270	0.44	-0.4