Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08815 and HGI48_RS08820 are separated by 185 nucleotides HGI48_RS08820 and HGI48_RS08825 are separated by 18 nucleotides HGI48_RS08825 and HGI48_RS08830 are separated by 113 nucleotides
HGI48_RS08815: HGI48_RS08815 - class IV adenylate cyclase, at 1,897,624 to 1,898,163
_RS08815
HGI48_RS08820: HGI48_RS08820 - D-alanyl-D-alanine endopeptidase, at 1,898,349 to 1,899,302
_RS08820
HGI48_RS08825: HGI48_RS08825 - glutathione S-transferase family protein, at 1,899,321 to 1,900,007
_RS08825
HGI48_RS08830: HGI48_RS08830 - DeoR/GlpR transcriptional regulator, at 1,900,121 to 1,900,897
_RS08830
Position (kb)
1898
1899
1900 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1897.399 kb on + strand at 1897.400 kb on - strand at 1897.400 kb on - strand at 1897.431 kb on + strand at 1897.431 kb on + strand at 1897.432 kb on - strand at 1897.432 kb on - strand at 1897.432 kb on - strand at 1897.432 kb on - strand at 1897.533 kb on - strand at 1897.648 kb on + strand at 1897.681 kb on - strand, within HGI48_RS08815 at 1897.681 kb on - strand, within HGI48_RS08815 at 1897.703 kb on + strand, within HGI48_RS08815 at 1897.747 kb on + strand, within HGI48_RS08815 at 1897.747 kb on + strand, within HGI48_RS08815 at 1897.757 kb on - strand, within HGI48_RS08815 at 1897.759 kb on + strand, within HGI48_RS08815 at 1897.794 kb on + strand, within HGI48_RS08815 at 1897.795 kb on - strand at 1897.795 kb on - strand, within HGI48_RS08815 at 1897.797 kb on + strand, within HGI48_RS08815 at 1897.797 kb on + strand, within HGI48_RS08815 at 1897.800 kb on + strand, within HGI48_RS08815 at 1897.801 kb on - strand, within HGI48_RS08815 at 1897.805 kb on + strand, within HGI48_RS08815 at 1897.806 kb on - strand, within HGI48_RS08815 at 1897.806 kb on - strand, within HGI48_RS08815 at 1897.848 kb on - strand, within HGI48_RS08815 at 1897.900 kb on - strand, within HGI48_RS08815 at 1897.912 kb on - strand, within HGI48_RS08815 at 1897.953 kb on + strand, within HGI48_RS08815 at 1897.953 kb on + strand, within HGI48_RS08815 at 1897.954 kb on - strand, within HGI48_RS08815 at 1897.969 kb on + strand, within HGI48_RS08815 at 1898.002 kb on + strand, within HGI48_RS08815 at 1898.003 kb on - strand, within HGI48_RS08815 at 1898.003 kb on - strand, within HGI48_RS08815 at 1898.004 kb on + strand, within HGI48_RS08815 at 1898.004 kb on + strand, within HGI48_RS08815 at 1898.069 kb on + strand, within HGI48_RS08815 at 1898.069 kb on + strand, within HGI48_RS08815 at 1898.069 kb on + strand, within HGI48_RS08815 at 1898.070 kb on - strand, within HGI48_RS08815 at 1898.141 kb on - strand at 1898.161 kb on + strand at 1898.161 kb on + strand at 1898.161 kb on + strand at 1898.161 kb on + strand at 1898.162 kb on - strand at 1898.162 kb on - strand at 1898.162 kb on - strand at 1898.293 kb on + strand at 1898.293 kb on + strand at 1898.293 kb on + strand at 1898.293 kb on + strand at 1898.294 kb on - strand at 1898.294 kb on - strand at 1898.295 kb on + strand at 1898.295 kb on + strand at 1898.295 kb on + strand at 1898.296 kb on - strand at 1898.377 kb on + strand at 1898.377 kb on + strand at 1898.377 kb on + strand at 1898.378 kb on - strand at 1898.378 kb on - strand at 1898.378 kb on - strand at 1898.378 kb on - strand at 1898.378 kb on - strand at 1898.378 kb on - strand at 1898.500 kb on + strand, within HGI48_RS08820 at 1898.500 kb on + strand, within HGI48_RS08820 at 1898.500 kb on + strand, within HGI48_RS08820 at 1898.501 kb on - strand, within HGI48_RS08820 at 1898.501 kb on - strand, within HGI48_RS08820 at 1898.501 kb on - strand, within HGI48_RS08820 at 1898.504 kb on + strand, within HGI48_RS08820 at 1898.505 kb on - strand at 1898.505 kb on - strand, within HGI48_RS08820 at 1898.505 kb on - strand, within HGI48_RS08820 at 1898.508 kb on - strand, within HGI48_RS08820 at 1898.508 kb on - strand, within HGI48_RS08820 at 1898.520 kb on + strand, within HGI48_RS08820 at 1898.521 kb on - strand, within HGI48_RS08820 at 1898.528 kb on + strand, within HGI48_RS08820 at 1898.618 kb on + strand, within HGI48_RS08820 at 1898.618 kb on + strand at 1898.661 kb on + strand at 1898.662 kb on - strand, within HGI48_RS08820 at 1898.662 kb on - strand, within HGI48_RS08820 at 1898.839 kb on - strand, within HGI48_RS08820 at 1898.942 kb on + strand at 1898.982 kb on + strand, within HGI48_RS08820 at 1898.982 kb on + strand, within HGI48_RS08820 at 1898.983 kb on - strand, within HGI48_RS08820 at 1899.019 kb on - strand, within HGI48_RS08820 at 1899.019 kb on - strand, within HGI48_RS08820 at 1899.180 kb on - strand, within HGI48_RS08820 at 1899.231 kb on + strand at 1899.232 kb on - strand at 1899.300 kb on + strand at 1899.305 kb on + strand at 1899.306 kb on - strand at 1899.418 kb on + strand, within HGI48_RS08825 at 1899.419 kb on - strand, within HGI48_RS08825 at 1899.419 kb on - strand, within HGI48_RS08825 at 1899.423 kb on + strand, within HGI48_RS08825 at 1899.423 kb on + strand, within HGI48_RS08825 at 1899.424 kb on - strand, within HGI48_RS08825 at 1899.424 kb on - strand, within HGI48_RS08825 at 1899.424 kb on - strand, within HGI48_RS08825 at 1899.494 kb on - strand, within HGI48_RS08825 at 1899.494 kb on - strand, within HGI48_RS08825 at 1899.582 kb on + strand at 1899.582 kb on + strand, within HGI48_RS08825 at 1899.583 kb on - strand, within HGI48_RS08825 at 1899.583 kb on - strand, within HGI48_RS08825 at 1899.583 kb on - strand, within HGI48_RS08825 at 1899.583 kb on - strand, within HGI48_RS08825 at 1899.583 kb on - strand, within HGI48_RS08825 at 1899.583 kb on - strand, within HGI48_RS08825 at 1899.598 kb on - strand, within HGI48_RS08825 at 1899.648 kb on + strand at 1899.648 kb on + strand, within HGI48_RS08825 at 1899.686 kb on + strand, within HGI48_RS08825 at 1899.687 kb on - strand, within HGI48_RS08825 at 1899.699 kb on - strand, within HGI48_RS08825 at 1899.790 kb on + strand, within HGI48_RS08825 at 1899.790 kb on + strand, within HGI48_RS08825 at 1899.977 kb on - strand at 1900.003 kb on + strand at 1900.003 kb on + strand at 1900.003 kb on + strand at 1900.003 kb on + strand at 1900.003 kb on + strand at 1900.003 kb on + strand at 1900.003 kb on + strand at 1900.003 kb on + strand at 1900.003 kb on + strand at 1900.004 kb on - strand at 1900.004 kb on - strand at 1900.004 kb on - strand at 1900.025 kb on + strand at 1900.025 kb on + strand at 1900.025 kb on + strand at 1900.025 kb on + strand at 1900.026 kb on - strand at 1900.026 kb on - strand at 1900.026 kb on - strand at 1900.027 kb on + strand at 1900.027 kb on + strand at 1900.028 kb on - strand at 1900.028 kb on - strand at 1900.028 kb on - strand at 1900.028 kb on - strand at 1900.028 kb on - strand at 1900.028 kb on - strand at 1900.047 kb on + strand at 1900.048 kb on - strand at 1900.068 kb on + strand at 1900.069 kb on - strand at 1900.075 kb on - strand at 1900.075 kb on - strand at 1900.091 kb on + strand at 1900.093 kb on + strand at 1900.093 kb on + strand at 1900.093 kb on + strand at 1900.094 kb on - strand at 1900.094 kb on - strand at 1900.228 kb on - strand, within HGI48_RS08830 at 1900.228 kb on - strand, within HGI48_RS08830 at 1900.232 kb on - strand, within HGI48_RS08830 at 1900.255 kb on + strand, within HGI48_RS08830 at 1900.255 kb on + strand, within HGI48_RS08830 at 1900.255 kb on + strand at 1900.256 kb on - strand, within HGI48_RS08830
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,897,399 + +0.8 1,897,400 - -0.3 1,897,400 - +0.2 1,897,431 + -0.6 1,897,431 + -0.7 1,897,432 - -0.2 1,897,432 - +0.4 1,897,432 - -0.6 1,897,432 - +0.4 1,897,533 - +1.0 1,897,648 + -0.2 1,897,681 - HGI48_RS08815 0.11 -0.9 1,897,681 - HGI48_RS08815 0.11 +0.7 1,897,703 + HGI48_RS08815 0.15 -0.7 1,897,747 + HGI48_RS08815 0.23 -0.4 1,897,747 + HGI48_RS08815 0.23 +1.2 1,897,757 - HGI48_RS08815 0.25 +0.9 1,897,759 + HGI48_RS08815 0.25 -0.9 1,897,794 + HGI48_RS08815 0.31 +0.9 1,897,795 - -0.2 1,897,795 - HGI48_RS08815 0.32 +0.1 1,897,797 + HGI48_RS08815 0.32 +0.7 1,897,797 + HGI48_RS08815 0.32 -0.4 1,897,800 + HGI48_RS08815 0.33 +0.2 1,897,801 - HGI48_RS08815 0.33 +0.1 1,897,805 + HGI48_RS08815 0.34 +0.1 1,897,806 - HGI48_RS08815 0.34 +0.2 1,897,806 - HGI48_RS08815 0.34 -1.0 1,897,848 - HGI48_RS08815 0.41 -1.3 1,897,900 - HGI48_RS08815 0.51 +1.2 1,897,912 - HGI48_RS08815 0.53 -1.4 1,897,953 + HGI48_RS08815 0.61 -1.9 1,897,953 + HGI48_RS08815 0.61 -0.6 1,897,954 - HGI48_RS08815 0.61 -0.6 1,897,969 + HGI48_RS08815 0.64 -0.6 1,898,002 + HGI48_RS08815 0.70 -0.2 1,898,003 - HGI48_RS08815 0.70 +0.7 1,898,003 - HGI48_RS08815 0.70 +0.7 1,898,004 + HGI48_RS08815 0.70 -0.1 1,898,004 + HGI48_RS08815 0.70 +0.4 1,898,069 + HGI48_RS08815 0.82 -0.6 1,898,069 + HGI48_RS08815 0.82 +0.1 1,898,069 + HGI48_RS08815 0.82 -1.6 1,898,070 - HGI48_RS08815 0.83 +0.8 1,898,141 - +1.2 1,898,161 + -0.2 1,898,161 + -0.4 1,898,161 + -1.0 1,898,161 + +0.6 1,898,162 - -0.9 1,898,162 - -0.2 1,898,162 - +0.2 1,898,293 + +0.4 1,898,293 + +0.4 1,898,293 + +0.3 1,898,293 + -0.2 1,898,294 - +1.4 1,898,294 - +1.4 1,898,295 + +0.3 1,898,295 + -0.0 1,898,295 + -0.2 1,898,296 - -1.4 1,898,377 + -0.2 1,898,377 + +0.6 1,898,377 + -0.0 1,898,378 - +1.3 1,898,378 - -0.1 1,898,378 - +2.3 1,898,378 - +0.7 1,898,378 - -0.6 1,898,378 - -0.0 1,898,500 + HGI48_RS08820 0.16 -0.1 1,898,500 + HGI48_RS08820 0.16 -0.4 1,898,500 + HGI48_RS08820 0.16 +0.0 1,898,501 - HGI48_RS08820 0.16 +1.2 1,898,501 - HGI48_RS08820 0.16 -0.3 1,898,501 - HGI48_RS08820 0.16 -0.8 1,898,504 + HGI48_RS08820 0.16 +0.9 1,898,505 - -0.2 1,898,505 - HGI48_RS08820 0.16 +0.6 1,898,505 - HGI48_RS08820 0.16 -1.4 1,898,508 - HGI48_RS08820 0.17 +0.7 1,898,508 - HGI48_RS08820 0.17 -0.7 1,898,520 + HGI48_RS08820 0.18 -0.3 1,898,521 - HGI48_RS08820 0.18 -1.7 1,898,528 + HGI48_RS08820 0.19 -0.9 1,898,618 + HGI48_RS08820 0.28 -1.0 1,898,618 + -1.2 1,898,661 + +1.7 1,898,662 - HGI48_RS08820 0.33 -1.2 1,898,662 - HGI48_RS08820 0.33 -0.2 1,898,839 - HGI48_RS08820 0.51 -1.4 1,898,942 + +0.4 1,898,982 + HGI48_RS08820 0.66 -0.5 1,898,982 + HGI48_RS08820 0.66 -0.3 1,898,983 - HGI48_RS08820 0.66 +0.4 1,899,019 - HGI48_RS08820 0.70 -0.4 1,899,019 - HGI48_RS08820 0.70 -0.1 1,899,180 - HGI48_RS08820 0.87 -0.3 1,899,231 + +0.4 1,899,232 - -0.2 1,899,300 + -1.0 1,899,305 + +0.4 1,899,306 - +0.1 1,899,418 + HGI48_RS08825 0.14 -0.9 1,899,419 - HGI48_RS08825 0.14 -1.5 1,899,419 - HGI48_RS08825 0.14 +0.7 1,899,423 + HGI48_RS08825 0.15 -0.4 1,899,423 + HGI48_RS08825 0.15 -1.0 1,899,424 - HGI48_RS08825 0.15 -0.3 1,899,424 - HGI48_RS08825 0.15 +0.1 1,899,424 - HGI48_RS08825 0.15 +0.8 1,899,494 - HGI48_RS08825 0.25 -1.2 1,899,494 - HGI48_RS08825 0.25 -0.9 1,899,582 + +1.4 1,899,582 + HGI48_RS08825 0.38 -0.2 1,899,583 - HGI48_RS08825 0.38 -1.2 1,899,583 - HGI48_RS08825 0.38 +0.6 1,899,583 - HGI48_RS08825 0.38 -1.6 1,899,583 - HGI48_RS08825 0.38 -0.2 1,899,583 - HGI48_RS08825 0.38 +0.1 1,899,583 - HGI48_RS08825 0.38 +0.2 1,899,598 - HGI48_RS08825 0.40 +0.2 1,899,648 + -0.6 1,899,648 + HGI48_RS08825 0.48 -1.9 1,899,686 + HGI48_RS08825 0.53 -0.5 1,899,687 - HGI48_RS08825 0.53 -0.3 1,899,699 - HGI48_RS08825 0.55 +0.2 1,899,790 + HGI48_RS08825 0.68 -2.1 1,899,790 + HGI48_RS08825 0.68 +0.2 1,899,977 - -0.0 1,900,003 + -2.9 1,900,003 + -1.2 1,900,003 + +0.6 1,900,003 + -0.6 1,900,003 + -1.2 1,900,003 + -0.3 1,900,003 + +0.8 1,900,003 + -0.3 1,900,003 + +0.7 1,900,004 - -1.5 1,900,004 - +0.3 1,900,004 - +2.1 1,900,025 + +0.8 1,900,025 + -1.8 1,900,025 + +1.1 1,900,025 + +0.8 1,900,026 - +0.4 1,900,026 - +0.1 1,900,026 - +3.6 1,900,027 + +0.4 1,900,027 + -0.1 1,900,028 - -0.0 1,900,028 - -0.2 1,900,028 - -0.6 1,900,028 - -1.2 1,900,028 - +0.3 1,900,028 - -1.6 1,900,047 + +0.8 1,900,048 - +0.4 1,900,068 + -0.1 1,900,069 - +0.1 1,900,075 - -0.3 1,900,075 - +1.1 1,900,091 + -0.6 1,900,093 + -0.2 1,900,093 + -0.9 1,900,093 + -1.1 1,900,094 - -0.3 1,900,094 - -0.3 1,900,228 - HGI48_RS08830 0.14 -0.0 1,900,228 - HGI48_RS08830 0.14 +0.8 1,900,232 - HGI48_RS08830 0.14 +0.7 1,900,255 + HGI48_RS08830 0.17 -1.6 1,900,255 + HGI48_RS08830 0.17 -0.9 1,900,255 + -1.2 1,900,256 - HGI48_RS08830 0.17 -0.6
Or see this region's nucleotide sequence