Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08210

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,762,338	-		HGI48_RS08205	0.30	+0.6
1,762,338	-		HGI48_RS08205	0.30	-0.1
1,762,338	-				+1.4
1,762,407	+		HGI48_RS08205	0.38	+0.9
1,762,578	+		HGI48_RS08205	0.55	-1.4
1,762,609	-		HGI48_RS08205	0.58	-0.9
1,762,609	-				+1.4
1,762,616	+		HGI48_RS08205	0.59	-0.4
1,762,616	+		HGI48_RS08205	0.59	-0.8
1,762,616	+		HGI48_RS08205	0.59	-2.9
1,762,617	-		HGI48_RS08205	0.59	+0.8
1,762,617	-		HGI48_RS08205	0.59	-0.6
1,762,617	-		HGI48_RS08205	0.59	+0.4
1,762,617	-		HGI48_RS08205	0.59	-0.1
1,762,621	-		HGI48_RS08205	0.59	-1.4
1,762,621	-		HGI48_RS08205	0.59	+0.8
1,762,621	-		HGI48_RS08205	0.59	+1.6
1,762,628	+		HGI48_RS08205	0.60	-1.9
1,762,629	-		HGI48_RS08205	0.60	-2.6
1,762,704	+				+0.4
1,762,789	+		HGI48_RS08205	0.76	-1.1
1,762,809	+		HGI48_RS08205	0.78	+1.9
1,762,810	-				+1.7
1,762,810	-		HGI48_RS08205	0.78	-1.7
1,762,810	-		HGI48_RS08205	0.78	-0.9
1,762,862	+		HGI48_RS08205	0.84	-0.8
1,762,862	+				-0.1
1,762,862	+		HGI48_RS08205	0.84	+0.0
1,762,863	-		HGI48_RS08205	0.84	+0.6
1,762,863	-				+1.4
1,762,863	-		HGI48_RS08205	0.84	-0.6
1,762,863	-		HGI48_RS08205	0.84	+0.2
1,762,863	-		HGI48_RS08205	0.84	+0.6
1,762,863	-		HGI48_RS08205	0.84	-0.0
1,763,059	-				-1.1
1,763,063	+				+0.3
1,763,063	+				+2.1
1,763,063	+				-0.2
1,763,064	-				+1.6
1,763,064	-				+1.0
1,763,085	-				-0.7
1,763,109	+				-0.6
1,763,109	+				-2.1
1,763,109	+				-1.9
1,763,110	-				+1.7
1,763,118	-				-0.8
1,763,125	-				+0.8
1,763,130	+				-0.8
1,763,130	+				+0.6
1,763,131	-				+0.4
1,763,131	-				-1.1
1,763,131	-				-0.4
1,763,158	-				+1.1
1,763,159	+				-2.4
1,763,159	+				+0.9
1,763,160	-				-0.8
1,763,160	-				+1.7
1,763,187	+				+0.0
1,763,202	+				+0.2
1,763,316	+				-1.7
1,763,317	-				-2.2
1,763,333	+				-1.4
1,763,355	-				-1.2
1,763,355	-		HGI48_RS08210	0.12	-2.6
1,763,379	+				+1.2
1,763,431	-		HGI48_RS08210	0.18	-0.4
1,763,465	+		HGI48_RS08210	0.21	-0.8
1,763,465	+		HGI48_RS08210	0.21	-0.2
1,763,475	+		HGI48_RS08210	0.21	-0.3
1,763,475	+		HGI48_RS08210	0.21	-0.6
1,763,476	-		HGI48_RS08210	0.21	+0.8
1,763,476	-		HGI48_RS08210	0.21	-1.7
1,763,476	-		HGI48_RS08210	0.21	-0.6
1,763,508	-		HGI48_RS08210	0.24	-1.0
1,763,589	+				-1.2
1,763,590	-		HGI48_RS08210	0.31	+0.0
1,763,648	+		HGI48_RS08210	0.35	-1.7
1,763,648	+		HGI48_RS08210	0.35	-0.9
1,763,649	-		HGI48_RS08210	0.35	-0.8
1,763,739	+		HGI48_RS08210	0.42	-1.2
1,764,081	+		HGI48_RS08210	0.70	+1.9
1,764,081	+		HGI48_RS08210	0.70	-2.6
1,764,113	+		HGI48_RS08210	0.72	-1.4
1,764,113	+		HGI48_RS08210	0.72	+0.0
1,764,113	+				-0.2
1,764,113	+				-1.2
1,764,114	-		HGI48_RS08210	0.73	+1.0
1,764,114	-		HGI48_RS08210	0.73	+1.8
1,764,114	-		HGI48_RS08210	0.73	-2.2
1,764,114	-		HGI48_RS08210	0.73	-0.3
1,764,115	+		HGI48_RS08210	0.73	+0.1
1,764,210	+		HGI48_RS08210	0.80	-0.6
1,764,211	-		HGI48_RS08210	0.80	+0.6
1,764,211	-				+1.0
1,764,211	-		HGI48_RS08210	0.80	-0.4
1,764,553	+				+1.4
1,764,553	+				-0.9
1,764,554	-				-0.8
1,764,583	+				-0.8
1,764,584	-				-1.9
1,764,614	+				-0.2
1,764,637	+				+0.7
1,764,637	+				-0.2
1,764,638	-				+0.1
1,764,638	-				-0.3
1,764,638	-				-0.4
1,764,655	+				-2.4
1,764,718	+				+1.2
1,764,718	+				+0.8
1,764,718	+				-0.2
1,764,718	+				+0.1
1,764,749	+				-1.9
1,764,750	-				-0.8
1,764,789	-		HGI48_RS08215	0.13	-0.3
1,764,873	+		HGI48_RS08215	0.21	-0.2
1,764,874	-		HGI48_RS08215	0.21	+1.0
1,764,874	-		HGI48_RS08215	0.21	-0.8
1,764,874	-		HGI48_RS08215	0.21	+0.0
1,764,917	-		HGI48_RS08215	0.25	-1.1
1,764,963	+		HGI48_RS08215	0.30	-1.6
1,764,963	+		HGI48_RS08215	0.30	-0.1
1,764,963	+		HGI48_RS08215	0.30	-1.0
1,764,963	+		HGI48_RS08215	0.30	+0.0
1,764,964	-		HGI48_RS08215	0.30	-0.9
1,764,964	-		HGI48_RS08215	0.30	+0.7
1,764,964	-		HGI48_RS08215	0.30	-0.2
1,765,017	+		HGI48_RS08215	0.35	+0.6
1,765,017	+		HGI48_RS08215	0.35	+1.2
1,765,017	+		HGI48_RS08215	0.35	+1.3
1,765,046	+		HGI48_RS08215	0.37	-0.6
1,765,046	+		HGI48_RS08215	0.37	+0.0
1,765,116	+		HGI48_RS08215	0.44	+1.1
1,765,116	+		HGI48_RS08215	0.44	+1.3
1,765,116	+		HGI48_RS08215	0.44	-1.2
1,765,117	-		HGI48_RS08215	0.44	-0.7
1,765,117	-				+1.0
1,765,117	-		HGI48_RS08215	0.44	-0.2
1,765,227	+		HGI48_RS08215	0.54	+0.1
1,765,227	+		HGI48_RS08215	0.54	-1.2
1,765,227	+		HGI48_RS08215	0.54	-0.4
1,765,227	+		HGI48_RS08215	0.54	-0.6
1,765,227	+		HGI48_RS08215	0.54	+0.0
1,765,227	+		HGI48_RS08215	0.54	+0.7
1,765,227	+		HGI48_RS08215	0.54	+1.0
1,765,227	+		HGI48_RS08215	0.54	-0.9
1,765,227	+		HGI48_RS08215	0.54	-0.5
1,765,227	+		HGI48_RS08215	0.54	-0.2
1,765,228	-		HGI48_RS08215	0.54	-1.9
1,765,228	-		HGI48_RS08215	0.54	+0.3
1,765,228	-		HGI48_RS08215	0.54	-0.8
1,765,228	-		HGI48_RS08215	0.54	+0.4
1,765,244	+		HGI48_RS08215	0.56	+0.1
1,765,244	+		HGI48_RS08215	0.56	-0.8
1,765,244	+		HGI48_RS08215	0.56	+0.4
1,765,244	+		HGI48_RS08215	0.56	-1.4
1,765,245	-		HGI48_RS08215	0.56	-0.2
1,765,245	-		HGI48_RS08215	0.56	-1.2
1,765,351	-		HGI48_RS08215	0.66	+1.0
1,765,351	-		HGI48_RS08215	0.66	+0.4
1,765,362	+		HGI48_RS08215	0.67	-1.6
1,765,362	+		HGI48_RS08215	0.67	+0.2
1,765,362	+		HGI48_RS08215	0.67	-0.7
1,765,363	-				+1.2
1,765,363	-		HGI48_RS08215	0.67	-0.2
1,765,363	-		HGI48_RS08215	0.67	-0.6
1,765,363	-		HGI48_RS08215	0.67	-1.7
1,765,365	-		HGI48_RS08215	0.67	+0.4
1,765,413	+		HGI48_RS08215	0.71	+0.4
1,765,416	+		HGI48_RS08215	0.72	+0.1
1,765,416	+				+0.4
1,765,416	+		HGI48_RS08215	0.72	-0.9
1,765,417	-		HGI48_RS08215	0.72	+0.2
1,765,417	-		HGI48_RS08215	0.72	+0.2
1,765,417	-		HGI48_RS08215	0.72	-1.6