Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07415

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,579,108	+				-0.7
1,579,109	-				-2.1
1,579,142	+				-0.9
1,579,143	-				+0.7
1,579,162	+				+0.3
1,579,163	-				-1.1
1,579,167	+				+0.2
1,579,167	+				+0.3
1,579,189	-				-0.5
1,579,218	-				-0.5
1,579,254	+				+0.2
1,579,254	+				-0.1
1,579,256	+				-0.6
1,579,256	+				-2.5
1,579,294	-				-1.5
1,579,328	+				+1.1
1,579,389	+				+0.3
1,579,398	-				-0.6
1,579,424	-				+0.3
1,579,444	-				-0.5
1,579,510	-				+0.1
1,579,687	+				-0.8
1,579,687	+				+1.0
1,579,743	-				-0.3
1,579,766	+				-1.7
1,579,782	+				-0.5
1,579,802	-				-0.1
1,579,891	-				-1.4
1,579,927	+				-0.5
1,579,928	-				-0.7
1,579,993	+				+0.1
1,580,042	+				-0.8
1,580,042	+				-0.2
1,580,042	+				+1.7
1,580,043	-				-1.5
1,580,053	+				-1.3
1,580,053	+				+0.7
1,580,053	+				-1.9
1,580,053	+				+0.3
1,580,053	+				-0.9
1,580,054	-				+0.7
1,580,054	-				-0.7
1,580,054	-				+0.1
1,580,054	-				-0.2
1,580,057	+				+0.5
1,580,057	+				-0.1
1,580,057	+				-1.1
1,580,057	+				-0.5
1,580,057	+				-0.1
1,580,057	+				-0.4
1,580,057	+				-1.1
1,580,058	-				-0.9
1,580,058	-				-0.1
1,580,058	-				-2.1
1,580,063	+				-0.3
1,580,064	-				+0.7
1,580,064	-				-1.5
1,580,090	-				+0.7
1,580,156	+				-0.1
1,580,157	-				-0.3
1,580,163	+				-0.4
1,580,165	+				-0.8
1,580,165	+				+0.1
1,580,165	+				-1.0
1,580,165	+				-0.2
1,580,165	+				-0.9
1,580,165	+				-1.9
1,580,165	+				+0.5
1,580,166	-				-0.2
1,580,166	-				-0.5
1,580,166	-				-2.1
1,580,166	-				+1.5
1,580,329	-		HGI48_RS07415	0.17	-1.9
1,580,491	+		HGI48_RS07415	0.28	-0.5
1,580,491	+		HGI48_RS07415	0.28	-1.0
1,580,491	+				+1.7
1,580,491	+		HGI48_RS07415	0.28	+1.4
1,580,491	+		HGI48_RS07415	0.28	+0.1
1,580,491	+		HGI48_RS07415	0.28	+0.8
1,580,491	+		HGI48_RS07415	0.28	+1.1
1,580,491	+		HGI48_RS07415	0.28	-1.2
1,580,492	-		HGI48_RS07415	0.28	-1.1
1,580,492	-		HGI48_RS07415	0.28	-1.5
1,580,492	-		HGI48_RS07415	0.28	-1.9
1,580,492	-		HGI48_RS07415	0.28	+0.8
1,580,492	-		HGI48_RS07415	0.28	-0.9
1,580,492	-				-1.1
1,580,492	-		HGI48_RS07415	0.28	-0.3
1,580,492	-		HGI48_RS07415	0.28	-1.9
1,580,492	-		HGI48_RS07415	0.28	-1.3
1,580,492	-		HGI48_RS07415	0.28	-1.6
1,580,534	-		HGI48_RS07415	0.31	-0.0
1,580,534	-		HGI48_RS07415	0.31	-0.4
1,580,550	-		HGI48_RS07415	0.32	-0.9
1,580,648	+		HGI48_RS07415	0.39	-0.9
1,580,649	-		HGI48_RS07415	0.39	-0.5
1,580,649	-		HGI48_RS07415	0.39	-0.3
1,580,649	-		HGI48_RS07415	0.39	-0.9
1,580,695	+		HGI48_RS07415	0.42	+1.5
1,580,696	-		HGI48_RS07415	0.42	+2.4
1,580,696	-		HGI48_RS07415	0.42	-0.2
1,580,696	-		HGI48_RS07415	0.42	+0.3
1,580,696	-		HGI48_RS07415	0.42	+0.5
1,580,921	+				-0.1
1,580,922	-		HGI48_RS07415	0.58	+0.1
1,580,922	-		HGI48_RS07415	0.58	-0.3
1,580,960	+		HGI48_RS07415	0.61	-0.4
1,580,960	+		HGI48_RS07415	0.61	-0.4
1,580,960	+		HGI48_RS07415	0.61	+0.5
1,580,960	+				+0.9
1,580,960	+		HGI48_RS07415	0.61	-1.1
1,580,961	-		HGI48_RS07415	0.61	+0.5
1,580,961	-		HGI48_RS07415	0.61	+0.4
1,580,961	-		HGI48_RS07415	0.61	-0.8
1,580,961	-		HGI48_RS07415	0.61	+0.0
1,580,978	+		HGI48_RS07415	0.62	+0.8
1,580,978	+		HGI48_RS07415	0.62	-1.5
1,580,978	+		HGI48_RS07415	0.62	-0.6
1,580,979	-		HGI48_RS07415	0.62	-0.8
1,580,979	-		HGI48_RS07415	0.62	-0.9
1,581,084	+		HGI48_RS07415	0.69	-1.5
1,581,084	+				-1.1
1,581,084	+		HGI48_RS07415	0.69	-2.3
1,581,084	+		HGI48_RS07415	0.69	+0.1
1,581,084	+		HGI48_RS07415	0.69	+0.1
1,581,085	-		HGI48_RS07415	0.69	-0.3
1,581,085	-		HGI48_RS07415	0.69	+0.5
1,581,174	-		HGI48_RS07415	0.75	-0.5
1,581,174	-		HGI48_RS07415	0.75	-0.1
1,581,176	+		HGI48_RS07415	0.76	+0.3
1,581,176	+		HGI48_RS07415	0.76	+0.1
1,581,176	+		HGI48_RS07415	0.76	+0.2
1,581,177	-				-1.1
1,581,177	-		HGI48_RS07415	0.76	-1.4
1,581,177	-		HGI48_RS07415	0.76	-0.3
1,581,409	+				-1.5
1,581,409	+				-1.2
1,581,409	+				+0.4
1,581,409	+				-0.8
1,581,410	-				+0.5
1,581,410	-				-0.8
1,581,410	-				-1.1
1,581,410	-				-1.1
1,581,491	+				-3.4
1,581,491	+				-0.8
1,581,491	+				+2.0
1,581,492	-				-0.5
1,581,492	-				-1.0
1,581,492	-				-0.6
1,581,498	+				-0.8
1,581,499	-				-0.3
1,581,499	-				+2.9
1,581,530	+				-1.9
1,581,531	-				+0.5
1,581,606	+				-0.6
1,581,606	+				+0.5
1,581,607	-				+1.5
1,581,607	-				+0.3
1,581,607	-				+1.1
1,581,607	-				-0.0
1,581,610	-				-1.9
1,581,610	-				-1.1
1,581,648	+				-0.5
1,581,682	+				+1.1
1,581,683	-				+0.1
1,581,683	-				+0.2
1,581,685	-				+1.5
1,581,699	-				-1.3
1,581,699	-				-1.1
1,581,770	-				+0.8
1,581,771	+				-0.1
1,581,771	+				-0.5
1,581,771	+				-0.0
1,581,772	-				-1.9
1,581,772	-				-1.1
1,581,772	-				-0.7
1,581,778	+				+1.0
1,581,778	+				+1.1
1,581,778	+				+0.1
1,581,779	-				+0.8
1,581,779	-				+0.3
1,581,782	+				-0.6
1,581,782	+				+1.0
1,581,886	+				-0.5
1,581,895	+				+0.8
1,581,956	+				-2.7
1,581,956	+				-1.1
1,581,956	+				-0.3
1,581,956	+				-0.6
1,581,957	-				+0.1
1,581,957	-				-0.7
1,581,957	-				-1.7
1,581,957	-				-0.3
1,581,980	+		HGI48_RS07420	0.11	-0.5
1,582,010	+		HGI48_RS07420	0.13	-2.1
1,582,011	-		HGI48_RS07420	0.13	-1.1
1,582,011	-		HGI48_RS07420	0.13	-0.9
1,582,011	-		HGI48_RS07420	0.13	-0.8
1,582,020	+		HGI48_RS07420	0.14	-0.4
1,582,020	+				+1.1
1,582,058	-		HGI48_RS07420	0.16	-2.1
1,582,074	-		HGI48_RS07420	0.18	-1.1
1,582,074	-		HGI48_RS07420	0.18	-0.1
1,582,074	-		HGI48_RS07420	0.18	+0.1
1,582,120	+		HGI48_RS07420	0.21	+1.1
1,582,121	-		HGI48_RS07420	0.21	-1.9
1,582,121	-		HGI48_RS07420	0.21	-1.1
1,582,126	+				+1.5
1,582,127	-		HGI48_RS07420	0.21	-0.0
1,582,127	-		HGI48_RS07420	0.21	+0.8
1,582,232	-		HGI48_RS07420	0.29	-1.0
1,582,250	+		HGI48_RS07420	0.30	-1.5
1,582,250	+		HGI48_RS07420	0.30	-0.3
1,582,251	-		HGI48_RS07420	0.30	+0.5