Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06230

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS06215 and HGI48_RS06220 are separated by 36 nucleotidesHGI48_RS06220 and HGI48_RS06225 are separated by 1 nucleotidesHGI48_RS06225 and HGI48_RS06230 are separated by 157 nucleotidesHGI48_RS06230 and HGI48_RS06235 overlap by 11 nucleotides HGI48_RS06215: HGI48_RS06215 - peptidoglycan DD-transpeptidase MrdA, at 1,320,347 to 1,322,257 _RS06215 HGI48_RS06220: HGI48_RS06220 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,322,294 to 1,322,764 _RS06220 HGI48_RS06225: HGI48_RS06225 - ribosome silencing factor, at 1,322,766 to 1,323,083 _RS06225 HGI48_RS06230: HGI48_RS06230 - nicotinate-nucleotide adenylyltransferase, at 1,323,241 to 1,323,915 _RS06230 HGI48_RS06235: HGI48_RS06235 - DNA polymerase III subunit delta, at 1,323,905 to 1,324,936 _RS06235 Position (kb) 1323 1324Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1322.243 kb on - strandat 1322.243 kb on - strandat 1322.250 kb on - strandat 1322.250 kb on - strandat 1322.296 kb on - strandat 1322.324 kb on - strandat 1322.327 kb on - strandat 1322.327 kb on - strandat 1322.327 kb on - strandat 1322.327 kb on - strandat 1322.327 kb on - strandat 1322.327 kb on - strandat 1322.327 kb on - strandat 1322.367 kb on - strand, within HGI48_RS06220at 1322.621 kb on - strand, within HGI48_RS06220at 1322.827 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strandat 1322.970 kb on - strand, within HGI48_RS06225at 1322.970 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.976 kb on - strand, within HGI48_RS06225at 1322.988 kb on - strand, within HGI48_RS06225at 1323.003 kb on + strand, within HGI48_RS06225at 1323.003 kb on + strand, within HGI48_RS06225at 1323.004 kb on - strand, within HGI48_RS06225at 1323.148 kb on - strandat 1323.203 kb on + strandat 1323.203 kb on + strandat 1323.205 kb on + strandat 1323.216 kb on + strandat 1323.216 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.218 kb on + strandat 1323.219 kb on - strandat 1323.229 kb on - strandat 1323.909 kb on - strandat 1323.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,322,243 - +1.0
1,322,243 - -1.2
1,322,250 - -2.2
1,322,250 - +1.4
1,322,296 - -1.2
1,322,324 - +0.4
1,322,327 - -0.4
1,322,327 - -1.0
1,322,327 - -1.2
1,322,327 - +1.2
1,322,327 - +0.0
1,322,327 - +1.0
1,322,327 - -2.2
1,322,367 - HGI48_RS06220 0.15 -1.0
1,322,621 - HGI48_RS06220 0.69 +0.6
1,322,827 - HGI48_RS06225 0.19 +0.8
1,322,970 - HGI48_RS06225 0.64 -0.1
1,322,970 - HGI48_RS06225 0.64 -0.1
1,322,970 - HGI48_RS06225 0.64 +0.9
1,322,970 - HGI48_RS06225 0.64 -0.2
1,322,970 - HGI48_RS06225 0.64 -1.7
1,322,970 - HGI48_RS06225 0.64 -0.1
1,322,970 - HGI48_RS06225 0.64 +0.4
1,322,970 - HGI48_RS06225 0.64 +0.9
1,322,970 - HGI48_RS06225 0.64 -0.8
1,322,970 - +1.0
1,322,970 - HGI48_RS06225 0.64 -1.6
1,322,970 - HGI48_RS06225 0.64 -0.1
1,322,976 - HGI48_RS06225 0.66 -1.0
1,322,976 - HGI48_RS06225 0.66 -0.4
1,322,976 - HGI48_RS06225 0.66 +0.1
1,322,976 - HGI48_RS06225 0.66 -0.2
1,322,976 - HGI48_RS06225 0.66 -3.2
1,322,976 - HGI48_RS06225 0.66 +1.1
1,322,976 - HGI48_RS06225 0.66 +0.5
1,322,976 - HGI48_RS06225 0.66 +0.3
1,322,976 - HGI48_RS06225 0.66 +0.4
1,322,976 - HGI48_RS06225 0.66 -1.2
1,322,976 - HGI48_RS06225 0.66 -0.1
1,322,976 - HGI48_RS06225 0.66 -1.4
1,322,988 - HGI48_RS06225 0.70 +0.7
1,323,003 + HGI48_RS06225 0.75 -2.2
1,323,003 + HGI48_RS06225 0.75 -1.0
1,323,004 - HGI48_RS06225 0.75 -0.2
1,323,148 - -0.2
1,323,203 + -1.2
1,323,203 + -2.7
1,323,205 + -1.2
1,323,216 + -1.4
1,323,216 + -2.8
1,323,218 + +1.4
1,323,218 + +3.3
1,323,218 + +0.0
1,323,218 + -2.0
1,323,218 + +0.2
1,323,218 + +0.6
1,323,219 - -2.2
1,323,229 - -1.2
1,323,909 - +0.2
1,323,909 - -0.2

Or see this region's nucleotide sequence