Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05935

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,258,972	-				-0.4
1,258,972	-				-0.7
1,259,033	-				-1.2
1,259,050	+				+0.6
1,259,050	+				+0.2
1,259,093	-				+0.3
1,259,113	-				-1.0
1,259,149	+				+2.1
1,259,150	-				-0.9
1,259,150	-				-0.9
1,259,150	-				-0.4
1,259,151	+				+0.4
1,259,151	+				-3.4
1,259,151	+				+0.6
1,259,151	+				+1.2
1,259,151	+				-0.6
1,259,151	+				+1.2
1,259,151	+				+0.4
1,259,152	-				-0.4
1,259,152	-				-0.4
1,259,288	-				-0.3
1,259,289	+				-0.5
1,259,289	+				-2.7
1,259,289	+				+1.1
1,259,298	+				-1.5
1,259,299	-				-0.4
1,259,327	-				+1.1
1,259,327	-				-1.1
1,259,407	+		HGI48_RS05935	0.11	+0.2
1,259,443	+		HGI48_RS05935	0.12	-0.2
1,259,444	-		HGI48_RS05935	0.12	-0.8
1,259,444	-		HGI48_RS05935	0.12	-1.2
1,259,444	-		HGI48_RS05935	0.12	-1.7
1,259,518	+		HGI48_RS05935	0.15	-0.8
1,259,518	+		HGI48_RS05935	0.15	+0.2
1,259,526	+		HGI48_RS05935	0.15	-1.4
1,259,741	+		HGI48_RS05935	0.22	-1.9
1,259,742	-		HGI48_RS05935	0.22	-0.5
1,259,742	-		HGI48_RS05935	0.22	+0.8
1,259,742	-		HGI48_RS05935	0.22	+0.8
1,259,743	+		HGI48_RS05935	0.23	+0.6
1,259,743	+		HGI48_RS05935	0.23	+0.6
1,259,743	+		HGI48_RS05935	0.23	-1.4
1,259,743	+		HGI48_RS05935	0.23	+0.3
1,259,743	+		HGI48_RS05935	0.23	-0.2
1,259,743	+		HGI48_RS05935	0.23	-1.2
1,259,744	-		HGI48_RS05935	0.23	-1.2
1,259,744	-		HGI48_RS05935	0.23	+2.4
1,259,744	-		HGI48_RS05935	0.23	-0.4
1,259,744	-		HGI48_RS05935	0.23	-0.1
1,259,805	+		HGI48_RS05935	0.25	+0.2
1,259,805	+		HGI48_RS05935	0.25	-0.2
1,259,805	+		HGI48_RS05935	0.25	+0.8
1,259,805	+				-0.4
1,259,805	+		HGI48_RS05935	0.25	+0.2
1,259,806	-		HGI48_RS05935	0.25	+0.1
1,259,806	-		HGI48_RS05935	0.25	-0.2
1,259,806	-		HGI48_RS05935	0.25	+1.0
1,259,806	-		HGI48_RS05935	0.25	+0.3
1,259,806	-		HGI48_RS05935	0.25	-0.3
1,259,806	-		HGI48_RS05935	0.25	+0.3
1,259,806	-		HGI48_RS05935	0.25	-0.7
1,259,840	+		HGI48_RS05935	0.26	-1.2
1,259,896	-		HGI48_RS05935	0.28	-1.6
1,259,896	-				+1.1
1,259,926	+		HGI48_RS05935	0.29	-0.1
1,259,926	+				+0.1
1,259,926	+		HGI48_RS05935	0.29	+1.3
1,259,926	+				+1.9
1,259,926	+		HGI48_RS05935	0.29	-0.9
1,259,926	+		HGI48_RS05935	0.29	+0.8
1,259,926	+		HGI48_RS05935	0.29	+1.6
1,259,927	-		HGI48_RS05935	0.29	-0.6
1,259,927	-		HGI48_RS05935	0.29	-0.4
1,259,927	-		HGI48_RS05935	0.29	-0.4
1,259,982	+		HGI48_RS05935	0.31	-0.5
1,260,002	-		HGI48_RS05935	0.32	-1.4
1,260,002	-		HGI48_RS05935	0.32	+1.0
1,260,039	+		HGI48_RS05935	0.33	+0.2
1,260,040	-		HGI48_RS05935	0.33	-0.9
1,260,081	+				+1.2
1,260,081	+		HGI48_RS05935	0.34	+1.1
1,260,096	-		HGI48_RS05935	0.35	-1.2
1,260,213	+		HGI48_RS05935	0.39	-0.0
1,260,213	+		HGI48_RS05935	0.39	-0.1
1,260,214	-		HGI48_RS05935	0.39	-2.4
1,260,240	+		HGI48_RS05935	0.40	-1.9
1,260,264	+		HGI48_RS05935	0.41	+0.3
1,260,264	+		HGI48_RS05935	0.41	-0.4
1,260,264	+		HGI48_RS05935	0.41	+0.1
1,260,264	+		HGI48_RS05935	0.41	+0.1
1,260,265	-		HGI48_RS05935	0.41	-0.9
1,260,265	-		HGI48_RS05935	0.41	+0.6
1,260,268	+		HGI48_RS05935	0.41	-0.0
1,260,269	-		HGI48_RS05935	0.41	+0.1
1,260,269	-		HGI48_RS05935	0.41	-0.6
1,260,286	+		HGI48_RS05935	0.41	+0.9
1,260,286	+		HGI48_RS05935	0.41	-0.6
1,260,286	+		HGI48_RS05935	0.41	+0.6
1,260,286	+		HGI48_RS05935	0.41	+0.7
1,260,287	-		HGI48_RS05935	0.42	+0.2
1,260,287	-		HGI48_RS05935	0.42	-0.7
1,260,287	-		HGI48_RS05935	0.42	+0.2
1,260,287	-		HGI48_RS05935	0.42	-1.5
1,260,453	+		HGI48_RS05935	0.47	-0.4
1,260,453	+		HGI48_RS05935	0.47	-1.2
1,260,542	+		HGI48_RS05935	0.50	-0.3
1,260,557	-		HGI48_RS05935	0.51	-0.2
1,260,557	-		HGI48_RS05935	0.51	-1.9
1,260,692	+		HGI48_RS05935	0.56	+1.3
1,260,693	-		HGI48_RS05935	0.56	-1.9
1,260,746	+		HGI48_RS05935	0.58	-1.4
1,260,746	+		HGI48_RS05935	0.58	-2.5
1,260,747	-				+0.6
1,260,762	+		HGI48_RS05935	0.58	+1.8
1,260,766	+		HGI48_RS05935	0.58	-0.8
1,260,767	-				-0.9
1,260,802	+		HGI48_RS05935	0.59	+0.3
1,260,802	+		HGI48_RS05935	0.59	-0.1
1,260,802	+		HGI48_RS05935	0.59	-1.4
1,260,803	-		HGI48_RS05935	0.60	-0.2
1,260,803	-		HGI48_RS05935	0.60	-0.4
1,260,803	-		HGI48_RS05935	0.60	+2.0
1,260,808	+		HGI48_RS05935	0.60	-0.4
1,260,808	+		HGI48_RS05935	0.60	-0.7
1,260,808	+		HGI48_RS05935	0.60	+0.6
1,260,808	+		HGI48_RS05935	0.60	-0.4
1,260,809	-		HGI48_RS05935	0.60	-0.7
1,260,809	-		HGI48_RS05935	0.60	-0.7
1,260,809	-		HGI48_RS05935	0.60	-1.7
1,260,809	-		HGI48_RS05935	0.60	+0.2
1,260,809	-		HGI48_RS05935	0.60	+0.1
1,260,809	-		HGI48_RS05935	0.60	+0.4
1,260,809	-				+1.4
1,260,809	-				+0.6
1,260,885	+		HGI48_RS05935	0.62	-0.0
1,260,900	+		HGI48_RS05935	0.63	-1.1
1,260,916	-		HGI48_RS05935	0.63	-0.4
1,260,916	-		HGI48_RS05935	0.63	-2.2
1,260,916	-		HGI48_RS05935	0.63	-1.4
1,260,916	-		HGI48_RS05935	0.63	-2.4
1,260,949	+		HGI48_RS05935	0.65	+0.1
1,261,264	+		HGI48_RS05935	0.76	-1.7
1,261,265	-		HGI48_RS05935	0.76	+0.4
1,261,265	-		HGI48_RS05935	0.76	-0.1
1,261,453	+		HGI48_RS05935	0.82	-0.0
1,261,453	+		HGI48_RS05935	0.82	-0.4
1,261,453	+		HGI48_RS05935	0.82	+2.1
1,261,478	+		HGI48_RS05935	0.83	-2.5
1,261,497	+		HGI48_RS05935	0.84	+0.2
1,261,497	+		HGI48_RS05935	0.84	-0.2
1,261,498	-				+2.2
1,261,556	-		HGI48_RS05935	0.86	-0.7
1,261,556	-		HGI48_RS05935	0.86	+0.4
1,261,556	-		HGI48_RS05935	0.86	+0.2
1,261,866	+				+0.1
1,261,896	+				-1.7
1,261,918	+				-1.4
1,261,921	+				+0.6
1,261,922	-				-0.8
1,261,926	+				+0.4
1,261,927	-				-0.8
1,262,006	+				+0.3
1,262,046	-				+1.3
1,262,063	+				-0.2
1,262,118	+		HGI48_RS05940	0.17	+0.5
1,262,118	+		HGI48_RS05940	0.17	-0.1
1,262,119	-		HGI48_RS05940	0.18	-2.5
1,262,402	-		HGI48_RS05940	0.61	+0.1
1,262,438	+		HGI48_RS05940	0.67	-1.7
1,262,438	+		HGI48_RS05940	0.67	-1.9
1,262,438	+		HGI48_RS05940	0.67	+0.6
1,262,438	+		HGI48_RS05940	0.67	-2.5
1,262,438	+		HGI48_RS05940	0.67	+0.1
1,262,438	+		HGI48_RS05940	0.67	+0.6
1,262,439	-		HGI48_RS05940	0.67	-0.4
1,262,465	+		HGI48_RS05940	0.71	-0.4
1,262,465	+				+0.6
1,262,466	-		HGI48_RS05940	0.71	-0.9
1,262,470	-		HGI48_RS05940	0.71	-1.4
1,262,485	+				+0.6
1,262,486	-		HGI48_RS05940	0.74	+0.2
1,262,530	-		HGI48_RS05940	0.81	+0.6
1,262,599	-				+0.1
1,262,663	+				-1.7
1,262,664	-				+0.6
1,262,735	-				+0.9
1,262,735	-				+0.5
1,262,757	+				+0.1
1,262,757	+				-1.7
1,262,758	-				-0.2
1,262,758	-				+0.6
1,262,760	+				+1.0
1,262,760	+				-0.9
1,262,761	-				+0.6
1,262,761	-				-2.2
1,262,782	+				-2.9
1,262,783	-				-0.5
1,262,783	-				-1.4
1,262,880	+				+1.4
1,262,880	+				-1.4
1,262,880	+				-0.1
1,262,880	+				-0.8
1,262,880	+				+0.9
1,262,881	-				-0.3
1,262,881	-				+1.3
1,262,881	-				-0.7
1,262,881	-				+0.6
1,262,881	-				+1.7
1,262,881	-				+0.3
1,262,882	+				-1.3
1,262,882	+				+0.2
1,262,882	+				+4.7
1,262,882	+				+2.1
1,262,882	+				-0.4
1,262,882	+				-0.4
1,262,882	+				+0.1
1,262,882	+				+2.1
1,262,882	+				+0.6
1,262,882	+				+1.8
1,262,882	+				+0.6
1,262,882	+				-0.7
1,262,882	+				-1.2
1,262,883	-				-0.7
1,262,883	-				-0.5
1,262,883	-				-0.1
1,262,883	-				-1.9
1,262,883	-				+1.4
1,262,883	-				-0.5
1,262,884	+				+2.4
1,262,884	+				-0.7
1,262,884	+				+1.0
1,262,884	+				-1.7
1,262,885	-				-0.4
1,262,885	-				-0.9
1,262,885	-				-1.9
1,262,885	-				-1.7
1,262,911	-				-1.9
1,262,927	+				+0.0
1,262,927	+				-1.9
1,262,927	+				+0.6
1,262,928	-				-1.7
1,262,928	-				-1.7
1,262,928	-				+0.1
1,262,944	+		HGI48_RS05945	0.11	-0.9
1,262,957	+		HGI48_RS05945	0.11	+0.4
1,262,958	-		HGI48_RS05945	0.11	-0.6