Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05665

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,192,225	-		HGI48_RS05660	0.42	+0.2
1,192,280	-		HGI48_RS05660	0.48	-1.4
1,192,351	-		HGI48_RS05660	0.55	-1.2
1,192,542	+		HGI48_RS05660	0.75	+0.8
1,192,759	-				-0.7
1,192,850	-				+0.3
1,192,859	+				-0.9
1,192,990	-				+0.3
1,192,995	+				+1.1
1,193,005	+				-0.8
1,193,008	+				+0.1
1,193,028	-				+0.0
1,193,056	-				-2.2
1,193,074	+				-1.4
1,193,091	+				-2.2
1,193,091	+				-1.0
1,193,092	-				+0.1
1,193,142	-				-1.7
1,193,145	-				+0.0
1,193,147	+				-0.5
1,193,148	-				-1.7
1,193,152	-				-0.5
1,193,152	-				-0.1
1,193,161	-				+0.0
1,193,186	+				-0.9
1,193,186	+				-0.3
1,193,187	-				-2.5
1,193,193	-				-1.8
1,193,193	-				+0.3
1,193,209	+				+0.6
1,193,211	+				+0.6
1,193,230	+				+0.3
1,193,230	+				+0.2
1,193,231	-				-0.3
1,193,250	+				+0.2
1,193,250	+				-0.4
1,193,250	+				-0.7
1,193,251	-				+0.8
1,193,251	-				+1.9
1,193,251	-				+0.1
1,193,271	+				-0.6
1,193,272	-				-2.2
1,193,272	-				-1.7
1,193,402	+		HGI48_RS05665	0.13	-1.7
1,193,402	+		HGI48_RS05665	0.13	+0.6
1,193,403	-				+0.6
1,193,404	+		HGI48_RS05665	0.13	+0.2
1,193,404	+		HGI48_RS05665	0.13	-0.7
1,193,524	+				+0.0
1,193,543	-		HGI48_RS05665	0.23	-1.7
1,193,726	+		HGI48_RS05665	0.35	-0.4
1,193,726	+		HGI48_RS05665	0.35	-0.4
1,193,727	-		HGI48_RS05665	0.35	-0.7
1,193,727	-		HGI48_RS05665	0.35	-2.2
1,193,730	+		HGI48_RS05665	0.36	+0.3
1,193,731	-		HGI48_RS05665	0.36	-1.0
1,193,731	-		HGI48_RS05665	0.36	-0.7
1,193,731	-		HGI48_RS05665	0.36	+1.5
1,193,731	-		HGI48_RS05665	0.36	+0.6
1,193,731	-		HGI48_RS05665	0.36	-2.5
1,193,898	+		HGI48_RS05665	0.47	+0.1
1,193,898	+		HGI48_RS05665	0.47	-2.2
1,193,899	-		HGI48_RS05665	0.47	-1.5
1,193,899	-		HGI48_RS05665	0.47	-0.0
1,193,977	+		HGI48_RS05665	0.52	-0.2
1,193,977	+		HGI48_RS05665	0.52	+0.0
1,193,977	+		HGI48_RS05665	0.52	-0.2
1,193,977	+		HGI48_RS05665	0.52	-0.5
1,193,977	+		HGI48_RS05665	0.52	-1.0
1,193,978	-		HGI48_RS05665	0.52	-2.8
1,193,978	-		HGI48_RS05665	0.52	-1.8
1,193,978	-		HGI48_RS05665	0.52	+0.6
1,193,978	-		HGI48_RS05665	0.52	+0.3
1,193,978	-		HGI48_RS05665	0.52	+1.2
1,194,116	+		HGI48_RS05665	0.62	+1.8
1,194,116	+		HGI48_RS05665	0.62	-1.5
1,194,117	-		HGI48_RS05665	0.62	-1.7
1,194,117	-		HGI48_RS05665	0.62	-0.1
1,194,148	+		HGI48_RS05665	0.64	-2.8
1,194,148	+		HGI48_RS05665	0.64	-0.4
1,194,148	+		HGI48_RS05665	0.64	+0.4
1,194,228	+				-1.0
1,194,228	+				+1.4
1,194,228	+		HGI48_RS05665	0.69	+0.8
1,194,229	-		HGI48_RS05665	0.69	-0.1
1,194,229	-		HGI48_RS05665	0.69	-0.7
1,194,357	+		HGI48_RS05665	0.78	-1.7
1,194,357	+				+0.0
1,194,358	-				+0.0
1,194,358	-		HGI48_RS05665	0.78	+0.0
1,194,358	-		HGI48_RS05665	0.78	+0.9
1,194,393	+		HGI48_RS05665	0.81	+0.1
1,194,423	+		HGI48_RS05665	0.83	-2.2
1,194,449	+		HGI48_RS05665	0.84	-0.5
1,194,450	-		HGI48_RS05665	0.84	-0.8
1,194,502	+		HGI48_RS05665	0.88	-1.2
1,194,502	+		HGI48_RS05665	0.88	-0.6
1,194,502	+		HGI48_RS05665	0.88	+0.9
1,194,502	+		HGI48_RS05665	0.88	-0.4
1,194,502	+		HGI48_RS05665	0.88	+1.3
1,194,502	+		HGI48_RS05665	0.88	+1.1
1,194,503	-		HGI48_RS05665	0.88	+0.9
1,194,503	-		HGI48_RS05665	0.88	-0.7
1,194,503	-		HGI48_RS05665	0.88	+1.8
1,194,546	+				+0.9
1,194,547	-				+0.3
1,194,641	+				-0.7
1,194,641	+				+0.6
1,194,641	+				-0.1
1,194,642	-				-0.2
1,194,677	+				-0.9
1,194,678	-				+0.2
1,194,729	-				+0.6
1,194,752	+				-0.5
1,194,761	+				-0.2
1,194,761	+				+0.1
1,194,761	+				-0.7
1,194,761	+				-0.8
1,194,762	-				-0.1
1,194,762	-				-0.7
1,194,762	-				+0.1
1,194,762	-				+1.2
1,194,762	-				-0.1
1,194,834	-		HGI48_RS05670	0.17	-0.7
1,194,861	+		HGI48_RS05670	0.22	-0.5
1,194,861	+		HGI48_RS05670	0.22	+0.2
1,194,861	+		HGI48_RS05670	0.22	+0.0
1,194,862	-		HGI48_RS05670	0.22	-0.4
1,194,862	-		HGI48_RS05670	0.22	-0.5
1,194,866	+				+0.6
1,194,867	-		HGI48_RS05670	0.23	-0.8
1,194,867	-		HGI48_RS05670	0.23	-0.6
1,194,868	+		HGI48_RS05670	0.23	-0.2
1,194,868	+		HGI48_RS05670	0.23	+0.4
1,194,868	+		HGI48_RS05670	0.23	-1.4
1,194,868	+		HGI48_RS05670	0.23	+0.3
1,194,869	-		HGI48_RS05670	0.23	-1.8
1,194,869	-		HGI48_RS05670	0.23	+0.3
1,194,869	-		HGI48_RS05670	0.23	-0.3
1,194,869	-				+1.2
1,194,869	-		HGI48_RS05670	0.23	-0.7
1,194,869	-		HGI48_RS05670	0.23	+1.0
1,194,896	+				+0.6
1,194,896	+		HGI48_RS05670	0.28	-1.1
1,194,896	+		HGI48_RS05670	0.28	-0.2
1,194,944	+		HGI48_RS05670	0.36	+0.8
1,194,952	+		HGI48_RS05670	0.37	-0.4
1,194,953	-		HGI48_RS05670	0.38	-0.4
1,194,982	+		HGI48_RS05670	0.43	+0.3
1,195,036	+		HGI48_RS05670	0.52	-0.5
1,195,317	+				-0.2
1,195,317	+				+2.1
1,195,318	-				+0.4
1,195,318	-				-1.0
1,195,318	-				-1.2
1,195,318	-				+0.6
1,195,318	-				-0.1
1,195,355	+				-3.6
1,195,355	+				+0.1
1,195,355	+				+0.1
1,195,355	+				+0.4
1,195,368	+				-1.8
1,195,368	+				-0.7
1,195,369	-				+0.0
1,195,369	-				-1.0
1,195,369	-				+0.1
1,195,369	-				+0.1
1,195,442	+				+2.6
1,195,442	+				+1.0
1,195,443	-				-0.2
1,195,520	-				+0.6
1,195,537	-				-1.4
1,195,607	+				-0.1
1,195,608	-				+0.6