Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04685 and HGI48_RS04690 are separated by 111 nucleotides HGI48_RS04690 and HGI48_RS04695 are separated by 8 nucleotides HGI48_RS04695 and HGI48_RS04700 are separated by 510 nucleotides
HGI48_RS04685: HGI48_RS04685 - glycoside hydrolase family 5 protein, at 985,638 to 986,585
_RS04685
HGI48_RS04690: HGI48_RS04690 - CcdB family protein, at 986,697 to 986,858
_RS04690
HGI48_RS04695: HGI48_RS04695 - molybdopterin-guanine dinucleotide biosynthesis protein MobC, at 986,867 to 987,004
_RS04695
HGI48_RS04700: HGI48_RS04700 - RES family NAD+ phosphorylase, at 987,515 to 988,168
_RS04700
Position (kb) 986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 985.707 kb on - strand at 985.739 kb on + strand at 985.754 kb on + strand at 985.766 kb on + strand, within HGI48_RS04685 at 985.826 kb on + strand, within HGI48_RS04685 at 985.838 kb on + strand, within HGI48_RS04685 at 985.839 kb on - strand, within HGI48_RS04685 at 985.850 kb on - strand at 985.935 kb on - strand, within HGI48_RS04685 at 985.935 kb on - strand, within HGI48_RS04685 at 985.969 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.983 kb on + strand, within HGI48_RS04685 at 985.984 kb on - strand at 985.984 kb on - strand, within HGI48_RS04685 at 985.984 kb on - strand, within HGI48_RS04685 at 985.990 kb on + strand at 985.991 kb on - strand, within HGI48_RS04685 at 985.991 kb on - strand, within HGI48_RS04685 at 986.091 kb on + strand, within HGI48_RS04685 at 986.091 kb on + strand at 986.091 kb on + strand, within HGI48_RS04685 at 986.091 kb on + strand, within HGI48_RS04685 at 986.100 kb on + strand, within HGI48_RS04685 at 986.100 kb on + strand, within HGI48_RS04685 at 986.101 kb on - strand, within HGI48_RS04685 at 986.101 kb on - strand, within HGI48_RS04685 at 986.146 kb on - strand, within HGI48_RS04685 at 986.274 kb on + strand at 986.275 kb on - strand, within HGI48_RS04685 at 986.289 kb on + strand, within HGI48_RS04685 at 986.339 kb on - strand, within HGI48_RS04685 at 986.444 kb on + strand, within HGI48_RS04685 at 986.445 kb on - strand, within HGI48_RS04685 at 986.445 kb on - strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.448 kb on + strand, within HGI48_RS04685 at 986.449 kb on - strand at 986.449 kb on - strand, within HGI48_RS04685 at 986.449 kb on - strand, within HGI48_RS04685 at 986.449 kb on - strand, within HGI48_RS04685 at 986.449 kb on - strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.450 kb on + strand, within HGI48_RS04685 at 986.451 kb on - strand at 986.451 kb on - strand, within HGI48_RS04685 at 986.451 kb on - strand, within HGI48_RS04685 at 986.451 kb on - strand, within HGI48_RS04685 at 986.451 kb on - strand at 986.451 kb on - strand, within HGI48_RS04685 at 986.460 kb on + strand, within HGI48_RS04685 at 986.465 kb on - strand, within HGI48_RS04685 at 986.475 kb on + strand, within HGI48_RS04685 at 986.476 kb on - strand, within HGI48_RS04685 at 986.476 kb on - strand, within HGI48_RS04685 at 986.523 kb on - strand at 986.553 kb on - strand at 986.556 kb on - strand at 986.556 kb on - strand at 986.602 kb on + strand at 986.602 kb on + strand at 986.602 kb on + strand at 986.602 kb on + strand at 986.603 kb on - strand at 986.603 kb on - strand at 986.607 kb on - strand at 986.607 kb on - strand at 986.607 kb on - strand at 986.607 kb on - strand at 986.633 kb on + strand at 986.634 kb on - strand at 986.658 kb on + strand at 986.658 kb on + strand at 986.659 kb on - strand at 986.662 kb on + strand at 986.662 kb on + strand at 986.662 kb on + strand at 986.663 kb on - strand at 986.663 kb on - strand at 986.663 kb on - strand at 986.663 kb on - strand at 986.727 kb on - strand, within HGI48_RS04690 at 986.727 kb on - strand, within HGI48_RS04690 at 986.733 kb on - strand, within HGI48_RS04690 at 986.735 kb on + strand, within HGI48_RS04690 at 986.736 kb on - strand, within HGI48_RS04690 at 986.736 kb on - strand, within HGI48_RS04690 at 986.736 kb on - strand, within HGI48_RS04690 at 986.744 kb on + strand, within HGI48_RS04690 at 986.759 kb on - strand at 986.777 kb on + strand, within HGI48_RS04690 at 986.866 kb on + strand at 986.866 kb on + strand at 986.866 kb on + strand at 986.866 kb on + strand at 986.867 kb on - strand at 986.867 kb on - strand at 986.867 kb on - strand at 986.867 kb on - strand at 986.873 kb on - strand at 986.972 kb on + strand, within HGI48_RS04695 at 986.973 kb on - strand, within HGI48_RS04695 at 987.013 kb on - strand at 987.013 kb on - strand at 987.013 kb on - strand at 987.013 kb on - strand at 987.038 kb on + strand at 987.044 kb on + strand at 987.045 kb on - strand at 987.045 kb on - strand at 987.045 kb on - strand at 987.119 kb on - strand at 987.123 kb on - strand at 987.135 kb on + strand at 987.136 kb on - strand at 987.136 kb on - strand at 987.136 kb on - strand at 987.136 kb on - strand at 987.140 kb on - strand at 987.140 kb on - strand at 987.140 kb on - strand at 987.142 kb on - strand at 987.369 kb on - strand at 987.402 kb on + strand at 987.402 kb on + strand at 987.403 kb on - strand at 987.403 kb on - strand at 987.432 kb on + strand at 987.457 kb on + strand at 987.457 kb on + strand at 987.457 kb on + strand at 987.458 kb on - strand at 987.460 kb on + strand at 987.460 kb on + strand at 987.512 kb on + strand at 987.513 kb on - strand at 987.513 kb on - strand at 987.582 kb on - strand, within HGI48_RS04700 at 987.637 kb on + strand, within HGI48_RS04700 at 987.662 kb on - strand, within HGI48_RS04700 at 987.662 kb on - strand, within HGI48_RS04700 at 987.662 kb on - strand at 987.662 kb on - strand at 987.662 kb on - strand, within HGI48_RS04700 at 987.760 kb on - strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.763 kb on + strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand at 987.764 kb on - strand at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.764 kb on - strand, within HGI48_RS04700 at 987.844 kb on + strand, within HGI48_RS04700
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 985,707 - -0.5 985,739 + +0.1 985,754 + +2.0 985,766 + HGI48_RS04685 0.14 +0.9 985,826 + HGI48_RS04685 0.20 -0.4 985,838 + HGI48_RS04685 0.21 -0.8 985,839 - HGI48_RS04685 0.21 +0.0 985,850 - +1.7 985,935 - HGI48_RS04685 0.31 +0.9 985,935 - HGI48_RS04685 0.31 -0.2 985,969 + HGI48_RS04685 0.35 +0.7 985,983 + HGI48_RS04685 0.36 -0.9 985,983 + HGI48_RS04685 0.36 -0.3 985,983 + HGI48_RS04685 0.36 +0.1 985,983 + HGI48_RS04685 0.36 -0.8 985,983 + HGI48_RS04685 0.36 -0.0 985,983 + HGI48_RS04685 0.36 -0.2 985,983 + HGI48_RS04685 0.36 -0.1 985,984 - +0.7 985,984 - HGI48_RS04685 0.36 -1.9 985,984 - HGI48_RS04685 0.36 +0.5 985,990 + +0.1 985,991 - HGI48_RS04685 0.37 +0.9 985,991 - HGI48_RS04685 0.37 +0.1 986,091 + HGI48_RS04685 0.48 -0.9 986,091 + -0.3 986,091 + HGI48_RS04685 0.48 -0.6 986,091 + HGI48_RS04685 0.48 -0.3 986,100 + HGI48_RS04685 0.49 -1.7 986,100 + HGI48_RS04685 0.49 +0.4 986,101 - HGI48_RS04685 0.49 -0.0 986,101 - HGI48_RS04685 0.49 +1.0 986,146 - HGI48_RS04685 0.54 +0.6 986,274 + -0.3 986,275 - HGI48_RS04685 0.67 +0.4 986,289 + HGI48_RS04685 0.69 -0.1 986,339 - HGI48_RS04685 0.74 +0.9 986,444 + HGI48_RS04685 0.85 -1.2 986,445 - HGI48_RS04685 0.85 +1.2 986,445 - HGI48_RS04685 0.85 -0.0 986,448 + HGI48_RS04685 0.85 -1.7 986,448 + HGI48_RS04685 0.85 -0.9 986,448 + HGI48_RS04685 0.85 -0.5 986,448 + HGI48_RS04685 0.85 +0.7 986,448 + HGI48_RS04685 0.85 +0.2 986,448 + HGI48_RS04685 0.85 +0.7 986,448 + HGI48_RS04685 0.85 +0.3 986,448 + HGI48_RS04685 0.85 -0.3 986,449 - +0.7 986,449 - HGI48_RS04685 0.86 -1.2 986,449 - HGI48_RS04685 0.86 -0.3 986,449 - HGI48_RS04685 0.86 -0.7 986,449 - HGI48_RS04685 0.86 -0.7 986,450 + HGI48_RS04685 0.86 +0.4 986,450 + HGI48_RS04685 0.86 +0.2 986,450 + HGI48_RS04685 0.86 -0.6 986,450 + HGI48_RS04685 0.86 -1.3 986,450 + HGI48_RS04685 0.86 -0.3 986,450 + HGI48_RS04685 0.86 -0.1 986,451 - +1.4 986,451 - HGI48_RS04685 0.86 -1.7 986,451 - HGI48_RS04685 0.86 -1.7 986,451 - HGI48_RS04685 0.86 -1.1 986,451 - +1.1 986,451 - HGI48_RS04685 0.86 -0.3 986,460 + HGI48_RS04685 0.87 +0.2 986,465 - HGI48_RS04685 0.87 +0.7 986,475 + HGI48_RS04685 0.88 +0.4 986,476 - HGI48_RS04685 0.88 +3.8 986,476 - HGI48_RS04685 0.88 +0.7 986,523 - +2.2 986,553 - -0.7 986,556 - +2.7 986,556 - +0.4 986,602 + +0.2 986,602 + -2.5 986,602 + -1.0 986,602 + -0.3 986,603 - -0.2 986,603 - +1.7 986,607 - +1.1 986,607 - -1.8 986,607 - -1.3 986,607 - -0.9 986,633 + +1.6 986,634 - -1.9 986,658 + -0.3 986,658 + +0.3 986,659 - +0.7 986,662 + +2.7 986,662 + -0.9 986,662 + -0.7 986,663 - -0.3 986,663 - +0.5 986,663 - -1.1 986,663 - -0.3 986,727 - HGI48_RS04690 0.19 +0.7 986,727 - HGI48_RS04690 0.19 -1.9 986,733 - HGI48_RS04690 0.22 -2.3 986,735 + HGI48_RS04690 0.23 -0.0 986,736 - HGI48_RS04690 0.24 -2.3 986,736 - HGI48_RS04690 0.24 -0.0 986,736 - HGI48_RS04690 0.24 +0.9 986,744 + HGI48_RS04690 0.29 -1.7 986,759 - +2.0 986,777 + HGI48_RS04690 0.49 +0.2 986,866 + -0.1 986,866 + -1.3 986,866 + -0.3 986,866 + -0.3 986,867 - -0.3 986,867 - -0.3 986,867 - +0.9 986,867 - -1.3 986,873 - +0.3 986,972 + HGI48_RS04695 0.76 +1.2 986,973 - HGI48_RS04695 0.77 +0.3 987,013 - -0.7 987,013 - +0.8 987,013 - +0.4 987,013 - -0.3 987,038 + +0.1 987,044 + -0.1 987,045 - +0.2 987,045 - +0.4 987,045 - +0.1 987,119 - -0.9 987,123 - +0.7 987,135 + +1.7 987,136 - -0.9 987,136 - -1.7 987,136 - +1.2 987,136 - +1.4 987,140 - -0.9 987,140 - +1.1 987,140 - -0.6 987,142 - +0.1 987,369 - +0.2 987,402 + +0.4 987,402 + -0.9 987,403 - -0.3 987,403 - +0.3 987,432 + +0.9 987,457 + +0.3 987,457 + +0.7 987,457 + -1.3 987,458 - -0.9 987,460 + -0.3 987,460 + +0.2 987,512 + -0.3 987,513 - -0.3 987,513 - -2.9 987,582 - HGI48_RS04700 0.10 +0.1 987,637 + HGI48_RS04700 0.19 -0.8 987,662 - HGI48_RS04700 0.22 -1.9 987,662 - HGI48_RS04700 0.22 -0.7 987,662 - -0.9 987,662 - -0.9 987,662 - HGI48_RS04700 0.22 -0.0 987,760 - HGI48_RS04700 0.37 +0.3 987,763 + HGI48_RS04700 0.38 -2.5 987,763 + HGI48_RS04700 0.38 +0.2 987,763 + HGI48_RS04700 0.38 +0.1 987,763 + HGI48_RS04700 0.38 -2.6 987,763 + HGI48_RS04700 0.38 -1.3 987,763 + HGI48_RS04700 0.38 -0.6 987,764 - HGI48_RS04700 0.38 +0.7 987,764 - HGI48_RS04700 0.38 -0.6 987,764 - HGI48_RS04700 0.38 +0.8 987,764 - -0.9 987,764 - +2.5 987,764 - HGI48_RS04700 0.38 -0.6 987,764 - HGI48_RS04700 0.38 -1.5 987,764 - HGI48_RS04700 0.38 -1.3 987,844 + HGI48_RS04700 0.50 +0.2
Or see this region's nucleotide sequence