Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04665 and HGI48_RS04670 are separated by 222 nucleotides HGI48_RS04670 and HGI48_RS04675 are separated by 300 nucleotides
HGI48_RS04665: HGI48_RS04665 - helix-turn-helix transcriptional regulator, at 981,211 to 981,606
_RS04665
HGI48_RS04670: HGI48_RS04670 - transposase, at 981,829 to 981,960
_RS04670
HGI48_RS04675: HGI48_RS04675 - alpha/beta hydrolase, at 982,261 to 983,001
_RS04675
Position (kb) 981
982 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 980.999 kb on - strand at 981.063 kb on - strand at 981.094 kb on + strand at 981.095 kb on - strand at 981.105 kb on + strand at 981.158 kb on + strand at 981.205 kb on + strand at 981.206 kb on - strand at 981.210 kb on + strand at 981.210 kb on + strand at 981.210 kb on + strand at 981.211 kb on - strand at 981.211 kb on - strand at 981.278 kb on + strand, within HGI48_RS04665 at 981.285 kb on + strand, within HGI48_RS04665 at 981.286 kb on - strand, within HGI48_RS04665 at 981.286 kb on - strand, within HGI48_RS04665 at 981.384 kb on + strand at 981.384 kb on + strand, within HGI48_RS04665 at 981.384 kb on + strand, within HGI48_RS04665 at 981.384 kb on + strand, within HGI48_RS04665 at 981.384 kb on + strand, within HGI48_RS04665 at 981.384 kb on + strand, within HGI48_RS04665 at 981.384 kb on + strand, within HGI48_RS04665 at 981.384 kb on + strand at 981.385 kb on - strand, within HGI48_RS04665 at 981.385 kb on - strand, within HGI48_RS04665 at 981.401 kb on + strand, within HGI48_RS04665 at 981.443 kb on - strand, within HGI48_RS04665 at 981.443 kb on - strand, within HGI48_RS04665 at 981.443 kb on - strand, within HGI48_RS04665 at 981.469 kb on + strand, within HGI48_RS04665 at 981.469 kb on + strand, within HGI48_RS04665 at 981.509 kb on + strand, within HGI48_RS04665 at 981.509 kb on + strand, within HGI48_RS04665 at 981.509 kb on + strand, within HGI48_RS04665 at 981.605 kb on - strand at 981.614 kb on + strand at 981.614 kb on + strand at 981.614 kb on + strand at 981.614 kb on + strand at 981.614 kb on + strand at 981.615 kb on - strand at 981.615 kb on - strand at 981.615 kb on - strand at 981.615 kb on - strand at 981.615 kb on - strand at 981.615 kb on - strand at 981.615 kb on - strand at 981.615 kb on - strand at 981.615 kb on - strand at 981.669 kb on - strand at 981.686 kb on + strand at 981.687 kb on - strand at 981.688 kb on + strand at 981.704 kb on - strand at 981.704 kb on - strand at 981.704 kb on - strand at 981.765 kb on + strand at 981.766 kb on - strand at 981.766 kb on - strand at 981.781 kb on + strand at 981.782 kb on - strand at 981.870 kb on + strand, within HGI48_RS04670 at 981.870 kb on + strand, within HGI48_RS04670 at 981.871 kb on - strand, within HGI48_RS04670 at 981.968 kb on + strand at 981.968 kb on + strand at 981.969 kb on - strand at 982.002 kb on + strand at 982.002 kb on + strand at 982.003 kb on - strand at 982.003 kb on - strand at 982.003 kb on - strand at 982.003 kb on - strand at 982.003 kb on - strand at 982.006 kb on + strand at 982.007 kb on - strand at 982.007 kb on - strand at 982.007 kb on - strand at 982.007 kb on - strand at 982.028 kb on + strand at 982.028 kb on + strand at 982.054 kb on + strand at 982.118 kb on - strand at 982.161 kb on - strand at 982.161 kb on - strand at 982.175 kb on - strand at 982.250 kb on + strand at 982.251 kb on - strand at 982.251 kb on - strand at 982.253 kb on + strand at 982.425 kb on + strand, within HGI48_RS04675 at 982.471 kb on + strand at 982.507 kb on + strand, within HGI48_RS04675 at 982.583 kb on - strand, within HGI48_RS04675 at 982.657 kb on + strand, within HGI48_RS04675 at 982.734 kb on + strand, within HGI48_RS04675 at 982.735 kb on - strand, within HGI48_RS04675 at 982.735 kb on - strand, within HGI48_RS04675 at 982.740 kb on + strand, within HGI48_RS04675 at 982.842 kb on - strand, within HGI48_RS04675
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 980,999 - +1.0 981,063 - -1.3 981,094 + +1.1 981,095 - +0.9 981,105 + -1.3 981,158 + +0.7 981,205 + +1.2 981,206 - -0.0 981,210 + -0.1 981,210 + +0.1 981,210 + -1.6 981,211 - -0.1 981,211 - +0.2 981,278 + HGI48_RS04665 0.17 +0.9 981,285 + HGI48_RS04665 0.19 -1.9 981,286 - HGI48_RS04665 0.19 -3.8 981,286 - HGI48_RS04665 0.19 -2.3 981,384 + +2.7 981,384 + HGI48_RS04665 0.44 +0.1 981,384 + HGI48_RS04665 0.44 -0.9 981,384 + HGI48_RS04665 0.44 -1.9 981,384 + HGI48_RS04665 0.44 +0.7 981,384 + HGI48_RS04665 0.44 -1.3 981,384 + HGI48_RS04665 0.44 -0.6 981,384 + +1.7 981,385 - HGI48_RS04665 0.44 -0.4 981,385 - HGI48_RS04665 0.44 +1.2 981,401 + HGI48_RS04665 0.48 +0.5 981,443 - HGI48_RS04665 0.59 -1.7 981,443 - HGI48_RS04665 0.59 +0.2 981,443 - HGI48_RS04665 0.59 +0.3 981,469 + HGI48_RS04665 0.65 +1.2 981,469 + HGI48_RS04665 0.65 -1.3 981,509 + HGI48_RS04665 0.75 -1.7 981,509 + HGI48_RS04665 0.75 +1.1 981,509 + HGI48_RS04665 0.75 +0.7 981,605 - -0.9 981,614 + -0.3 981,614 + -1.7 981,614 + -1.9 981,614 + +0.2 981,614 + -0.1 981,615 - -0.9 981,615 - +1.0 981,615 - -1.1 981,615 - -0.6 981,615 - +0.9 981,615 - -0.3 981,615 - -1.5 981,615 - +0.2 981,615 - +1.1 981,669 - -1.9 981,686 + +1.0 981,687 - -1.0 981,688 + -1.5 981,704 - +0.7 981,704 - -2.3 981,704 - -0.5 981,765 + +0.2 981,766 - +0.2 981,766 - +0.3 981,781 + -0.3 981,782 - -0.7 981,870 + HGI48_RS04670 0.31 +0.7 981,870 + HGI48_RS04670 0.31 +1.1 981,871 - HGI48_RS04670 0.32 -1.1 981,968 + +0.2 981,968 + +0.5 981,969 - -1.7 982,002 + +0.1 982,002 + -1.3 982,003 - +1.0 982,003 - +0.2 982,003 - -0.8 982,003 - -0.3 982,003 - -0.3 982,006 + -0.7 982,007 - +0.4 982,007 - -0.6 982,007 - -1.3 982,007 - -0.1 982,028 + -1.3 982,028 + +0.1 982,054 + -1.4 982,118 - -0.9 982,161 - -1.5 982,161 - +0.5 982,175 - -0.7 982,250 + -1.9 982,251 - -0.1 982,251 - -0.3 982,253 + -0.5 982,425 + HGI48_RS04675 0.22 -0.3 982,471 + +1.4 982,507 + HGI48_RS04675 0.33 -1.2 982,583 - HGI48_RS04675 0.43 +0.9 982,657 + HGI48_RS04675 0.53 +0.2 982,734 + HGI48_RS04675 0.64 +1.2 982,735 - HGI48_RS04675 0.64 +0.4 982,735 - HGI48_RS04675 0.64 -0.3 982,740 + HGI48_RS04675 0.65 +0.5 982,842 - HGI48_RS04675 0.78 -0.7
Or see this region's nucleotide sequence