Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04525 and HGI48_RS04530 are separated by 62 nucleotides HGI48_RS04530 and HGI48_RS04535 are separated by 77 nucleotides HGI48_RS04535 and HGI48_RS04540 are separated by 2 nucleotides HGI48_RS04540 and HGI48_RS04545 overlap by 8 nucleotides
HGI48_RS04525: HGI48_RS04525 - FAD-dependent oxidoreductase, at 948,536 to 950,107
_RS04525
HGI48_RS04530: HGI48_RS04530 - FMN-binding protein, at 950,170 to 950,520
_RS04530
HGI48_RS04535: HGI48_RS04535 - MFS transporter, at 950,598 to 951,977
_RS04535
HGI48_RS04540: HGI48_RS04540 - cytochrome c nitrite reductase subunit NrfD, at 951,980 to 952,936
_RS04540
HGI48_RS04545: HGI48_RS04545 - 4Fe-4S dicluster domain-containing protein, at 952,929 to 953,627
_RS04545
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 949.647 kb on + strand, within HGI48_RS04525 at 949.647 kb on + strand, within HGI48_RS04525 at 949.647 kb on + strand, within HGI48_RS04525 at 949.647 kb on + strand, within HGI48_RS04525 at 949.648 kb on - strand, within HGI48_RS04525 at 949.746 kb on + strand, within HGI48_RS04525 at 949.747 kb on - strand, within HGI48_RS04525 at 949.785 kb on - strand, within HGI48_RS04525 at 949.912 kb on + strand, within HGI48_RS04525 at 950.002 kb on + strand at 950.073 kb on - strand at 950.073 kb on - strand at 950.073 kb on - strand at 950.073 kb on - strand at 950.107 kb on + strand at 950.107 kb on + strand at 950.107 kb on + strand at 950.107 kb on + strand at 950.107 kb on + strand at 950.110 kb on + strand at 950.110 kb on + strand at 950.110 kb on + strand at 950.111 kb on - strand at 950.127 kb on - strand at 950.374 kb on + strand, within HGI48_RS04530 at 950.374 kb on + strand, within HGI48_RS04530 at 950.374 kb on + strand, within HGI48_RS04530 at 950.374 kb on + strand, within HGI48_RS04530 at 950.374 kb on + strand, within HGI48_RS04530 at 950.375 kb on - strand, within HGI48_RS04530 at 950.375 kb on - strand, within HGI48_RS04530 at 950.426 kb on + strand at 950.521 kb on - strand at 950.551 kb on + strand at 950.551 kb on + strand at 950.566 kb on + strand at 950.566 kb on + strand at 950.567 kb on - strand at 950.567 kb on - strand at 950.569 kb on + strand at 950.616 kb on + strand at 950.617 kb on - strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 951.096 kb on - strand, within HGI48_RS04535 at 951.197 kb on - strand, within HGI48_RS04535 at 951.197 kb on - strand, within HGI48_RS04535 at 951.197 kb on - strand, within HGI48_RS04535 at 951.197 kb on - strand, within HGI48_RS04535 at 951.197 kb on - strand, within HGI48_RS04535 at 951.266 kb on - strand, within HGI48_RS04535 at 951.332 kb on + strand at 951.619 kb on - strand, within HGI48_RS04535 at 951.829 kb on + strand, within HGI48_RS04535 at 951.829 kb on + strand, within HGI48_RS04535 at 951.829 kb on + strand, within HGI48_RS04535 at 951.876 kb on - strand at 951.876 kb on - strand at 951.901 kb on + strand at 951.901 kb on + strand at 951.901 kb on + strand at 951.901 kb on + strand at 951.901 kb on + strand at 951.902 kb on - strand at 951.902 kb on - strand at 951.902 kb on - strand at 951.902 kb on - strand at 951.902 kb on - strand at 951.929 kb on + strand at 951.929 kb on + strand at 951.957 kb on + strand at 952.005 kb on + strand at 952.005 kb on + strand at 952.071 kb on + strand at 952.072 kb on - strand at 952.127 kb on - strand, within HGI48_RS04540 at 952.141 kb on + strand, within HGI48_RS04540 at 952.142 kb on - strand, within HGI48_RS04540 at 952.406 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.504 kb on + strand at 952.527 kb on - strand, within HGI48_RS04540 at 952.538 kb on + strand, within HGI48_RS04540 at 952.539 kb on - strand, within HGI48_RS04540 at 952.596 kb on + strand, within HGI48_RS04540 at 952.596 kb on + strand, within HGI48_RS04540 at 952.623 kb on - strand, within HGI48_RS04540 at 952.632 kb on + strand at 952.632 kb on + strand, within HGI48_RS04540 at 952.632 kb on + strand, within HGI48_RS04540 at 952.632 kb on + strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.680 kb on + strand at 952.680 kb on + strand, within HGI48_RS04540 at 952.695 kb on + strand, within HGI48_RS04540 at 952.695 kb on + strand, within HGI48_RS04540 at 952.784 kb on - strand, within HGI48_RS04540 at 952.798 kb on + strand, within HGI48_RS04540 at 952.798 kb on + strand, within HGI48_RS04540 at 952.799 kb on - strand, within HGI48_RS04540 at 952.799 kb on - strand, within HGI48_RS04540 at 952.821 kb on + strand, within HGI48_RS04540 at 952.881 kb on + strand at 952.881 kb on + strand at 952.882 kb on - strand at 952.951 kb on + strand at 952.951 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 949,647 + HGI48_RS04525 0.71 -1.3 949,647 + HGI48_RS04525 0.71 -0.6 949,647 + HGI48_RS04525 0.71 -0.6 949,647 + HGI48_RS04525 0.71 -1.3 949,648 - HGI48_RS04525 0.71 -1.9 949,746 + HGI48_RS04525 0.77 -0.3 949,747 - HGI48_RS04525 0.77 +0.7 949,785 - HGI48_RS04525 0.79 +1.4 949,912 + HGI48_RS04525 0.88 -0.3 950,002 + -0.6 950,073 - +0.4 950,073 - -1.8 950,073 - -0.9 950,073 - -1.1 950,107 + -1.9 950,107 + +0.7 950,107 + -2.2 950,107 + +0.7 950,107 + +0.9 950,110 + -0.8 950,110 + +0.3 950,110 + -0.3 950,111 - +1.3 950,127 - +0.7 950,374 + HGI48_RS04530 0.58 +0.7 950,374 + HGI48_RS04530 0.58 +0.4 950,374 + HGI48_RS04530 0.58 -0.9 950,374 + HGI48_RS04530 0.58 -0.6 950,374 + HGI48_RS04530 0.58 +0.3 950,375 - HGI48_RS04530 0.58 +0.3 950,375 - HGI48_RS04530 0.58 +0.1 950,426 + -0.9 950,521 - -1.9 950,551 + -1.7 950,551 + +0.0 950,566 + -0.7 950,566 + +0.3 950,567 - +0.3 950,567 - +1.3 950,569 + -0.5 950,616 + +1.2 950,617 - +0.7 950,619 + -1.3 950,619 + +0.9 950,619 + -2.1 950,619 + -0.3 950,619 + +1.1 950,619 + -0.7 950,619 + +0.7 950,619 + -0.2 950,619 + +0.6 950,620 - +0.1 950,620 - -0.7 950,620 - -0.3 950,620 - +1.7 950,620 - -0.1 950,620 - -0.1 950,620 - -0.2 950,620 - -2.3 950,620 - +0.3 951,096 - HGI48_RS04535 0.36 -0.0 951,197 - HGI48_RS04535 0.43 +0.3 951,197 - HGI48_RS04535 0.43 -0.6 951,197 - HGI48_RS04535 0.43 -2.1 951,197 - HGI48_RS04535 0.43 -0.3 951,197 - HGI48_RS04535 0.43 -2.2 951,266 - HGI48_RS04535 0.48 +0.8 951,332 + +2.8 951,619 - HGI48_RS04535 0.74 -0.2 951,829 + HGI48_RS04535 0.89 -1.0 951,829 + HGI48_RS04535 0.89 +0.2 951,829 + HGI48_RS04535 0.89 -0.1 951,876 - -0.2 951,876 - -0.3 951,901 + -1.7 951,901 + +1.1 951,901 + -0.8 951,901 + -0.6 951,901 + -0.5 951,902 - -0.8 951,902 - +0.7 951,902 - -0.6 951,902 - -1.0 951,902 - -0.6 951,929 + +0.3 951,929 + -0.1 951,957 + -1.9 952,005 + -0.3 952,005 + -0.3 952,071 + -0.6 952,072 - +3.0 952,127 - HGI48_RS04540 0.15 -1.9 952,141 + HGI48_RS04540 0.17 -0.5 952,142 - HGI48_RS04540 0.17 +2.3 952,406 - HGI48_RS04540 0.45 -0.7 952,485 - HGI48_RS04540 0.53 -0.3 952,485 - HGI48_RS04540 0.53 -1.1 952,485 - HGI48_RS04540 0.53 +0.3 952,502 + HGI48_RS04540 0.55 -0.1 952,502 + HGI48_RS04540 0.55 -2.7 952,502 + HGI48_RS04540 0.55 -0.0 952,502 + HGI48_RS04540 0.55 -0.9 952,502 + HGI48_RS04540 0.55 -0.3 952,502 + HGI48_RS04540 0.55 -0.3 952,503 - HGI48_RS04540 0.55 -1.1 952,503 - HGI48_RS04540 0.55 -2.3 952,503 - HGI48_RS04540 0.55 -1.1 952,504 + +0.7 952,527 - HGI48_RS04540 0.57 -1.3 952,538 + HGI48_RS04540 0.58 -1.2 952,539 - HGI48_RS04540 0.58 -0.5 952,596 + HGI48_RS04540 0.64 +0.7 952,596 + HGI48_RS04540 0.64 +2.1 952,623 - HGI48_RS04540 0.67 +0.8 952,632 + -0.9 952,632 + HGI48_RS04540 0.68 +0.1 952,632 + HGI48_RS04540 0.68 -0.1 952,632 + HGI48_RS04540 0.68 -0.9 952,633 - HGI48_RS04540 0.68 +0.2 952,633 - HGI48_RS04540 0.68 -0.8 952,633 - HGI48_RS04540 0.68 +0.5 952,633 - -0.9 952,633 - HGI48_RS04540 0.68 +1.0 952,633 - HGI48_RS04540 0.68 -1.9 952,633 - HGI48_RS04540 0.68 +1.8 952,680 + +0.7 952,680 + HGI48_RS04540 0.73 +0.6 952,695 + HGI48_RS04540 0.75 -0.6 952,695 + HGI48_RS04540 0.75 +1.3 952,784 - HGI48_RS04540 0.84 -0.3 952,798 + HGI48_RS04540 0.85 -0.4 952,798 + HGI48_RS04540 0.85 -2.1 952,799 - HGI48_RS04540 0.86 -1.2 952,799 - HGI48_RS04540 0.86 -0.3 952,821 + HGI48_RS04540 0.88 -0.3 952,881 + -1.1 952,881 + -0.1 952,882 - +0.2 952,951 + +0.0 952,951 + -0.6
Or see this region's nucleotide sequence