Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04485 and HGI48_RS04490 are separated by 13 nucleotides HGI48_RS04490 and HGI48_RS04495 are separated by 162 nucleotides
HGI48_RS04485: HGI48_RS04485 - NADH:flavorubredoxin reductase NorW, at 938,677 to 939,834
_RS04485
HGI48_RS04490: HGI48_RS04490 - anaerobic nitric oxide reductase flavorubredoxin, at 939,848 to 941,383
_RS04490
HGI48_RS04495: HGI48_RS04495 - nitric oxide reductase transcriptional regulator NorR, at 941,546 to 943,072
_RS04495
Position (kb) 939
940
941
942 Strain fitness (log2 ratio) -2
-1
0
1
2 at 938.868 kb on + strand, within HGI48_RS04485 at 938.928 kb on + strand, within HGI48_RS04485 at 938.928 kb on + strand, within HGI48_RS04485 at 938.929 kb on - strand, within HGI48_RS04485 at 938.929 kb on - strand, within HGI48_RS04485 at 938.937 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand, within HGI48_RS04485 at 938.940 kb on + strand at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.941 kb on - strand, within HGI48_RS04485 at 938.966 kb on - strand, within HGI48_RS04485 at 939.029 kb on + strand, within HGI48_RS04485 at 939.029 kb on + strand, within HGI48_RS04485 at 939.030 kb on - strand, within HGI48_RS04485 at 939.034 kb on - strand, within HGI48_RS04485 at 939.114 kb on + strand, within HGI48_RS04485 at 939.180 kb on + strand, within HGI48_RS04485 at 939.180 kb on + strand, within HGI48_RS04485 at 939.181 kb on - strand, within HGI48_RS04485 at 939.181 kb on - strand, within HGI48_RS04485 at 939.358 kb on - strand, within HGI48_RS04485 at 939.397 kb on + strand, within HGI48_RS04485 at 939.397 kb on + strand, within HGI48_RS04485 at 939.444 kb on - strand, within HGI48_RS04485 at 939.543 kb on - strand, within HGI48_RS04485 at 939.559 kb on + strand, within HGI48_RS04485 at 939.559 kb on + strand, within HGI48_RS04485 at 939.560 kb on - strand, within HGI48_RS04485 at 939.615 kb on + strand, within HGI48_RS04485 at 939.615 kb on + strand at 939.616 kb on - strand at 939.616 kb on - strand, within HGI48_RS04485 at 939.616 kb on - strand at 939.616 kb on - strand, within HGI48_RS04485 at 939.616 kb on - strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.713 kb on + strand, within HGI48_RS04485 at 939.714 kb on - strand, within HGI48_RS04485 at 939.714 kb on - strand, within HGI48_RS04485 at 939.780 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.834 kb on + strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.835 kb on - strand at 939.838 kb on + strand at 939.839 kb on - strand at 939.863 kb on - strand at 939.911 kb on + strand at 939.911 kb on + strand at 939.973 kb on - strand at 940.009 kb on + strand, within HGI48_RS04490 at 940.009 kb on + strand, within HGI48_RS04490 at 940.009 kb on + strand, within HGI48_RS04490 at 940.010 kb on - strand, within HGI48_RS04490 at 940.010 kb on - strand, within HGI48_RS04490 at 940.282 kb on + strand, within HGI48_RS04490 at 940.283 kb on - strand, within HGI48_RS04490 at 940.283 kb on - strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand, within HGI48_RS04490 at 940.347 kb on + strand at 940.348 kb on - strand, within HGI48_RS04490 at 940.436 kb on - strand, within HGI48_RS04490 at 940.521 kb on + strand, within HGI48_RS04490 at 940.522 kb on - strand, within HGI48_RS04490 at 940.522 kb on - strand, within HGI48_RS04490 at 940.611 kb on + strand, within HGI48_RS04490 at 940.611 kb on + strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.638 kb on + strand, within HGI48_RS04490 at 940.660 kb on - strand, within HGI48_RS04490 at 940.669 kb on + strand at 940.670 kb on - strand at 940.670 kb on - strand, within HGI48_RS04490 at 940.803 kb on + strand, within HGI48_RS04490 at 940.869 kb on + strand, within HGI48_RS04490 at 940.869 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 941.082 kb on + strand, within HGI48_RS04490 at 941.163 kb on + strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.271 kb on + strand at 941.271 kb on + strand at 941.271 kb on + strand at 941.279 kb on - strand at 941.279 kb on - strand at 941.280 kb on + strand at 941.280 kb on + strand at 941.280 kb on + strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.359 kb on + strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.368 kb on + strand at 941.377 kb on + strand at 941.378 kb on - strand at 941.378 kb on - strand at 941.378 kb on - strand at 941.404 kb on - strand at 941.404 kb on - strand at 941.406 kb on + strand at 941.413 kb on - strand at 941.413 kb on - strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.417 kb on - strand at 941.559 kb on + strand at 941.559 kb on + strand at 941.560 kb on - strand at 941.560 kb on - strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.653 kb on - strand at 941.653 kb on - strand at 941.653 kb on - strand at 941.681 kb on + strand at 941.837 kb on + strand, within HGI48_RS04495 at 941.838 kb on - strand, within HGI48_RS04495 at 941.838 kb on - strand, within HGI48_RS04495 at 942.175 kb on + strand, within HGI48_RS04495 at 942.175 kb on + strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.269 kb on + strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 938,868 + HGI48_RS04485 0.16 +0.6 938,928 + HGI48_RS04485 0.22 -0.1 938,928 + HGI48_RS04485 0.22 -1.3 938,929 - HGI48_RS04485 0.22 +0.2 938,929 - HGI48_RS04485 0.22 +0.7 938,937 + HGI48_RS04485 0.22 +0.2 938,940 + HGI48_RS04485 0.23 -1.7 938,940 + HGI48_RS04485 0.23 +0.2 938,940 + HGI48_RS04485 0.23 -0.6 938,940 + HGI48_RS04485 0.23 -0.6 938,940 + -0.9 938,941 - HGI48_RS04485 0.23 +0.8 938,941 - HGI48_RS04485 0.23 -0.2 938,941 - HGI48_RS04485 0.23 -0.2 938,941 - HGI48_RS04485 0.23 -0.0 938,941 - HGI48_RS04485 0.23 -0.5 938,966 - HGI48_RS04485 0.25 -0.9 939,029 + HGI48_RS04485 0.30 +1.3 939,029 + HGI48_RS04485 0.30 +0.7 939,030 - HGI48_RS04485 0.30 +0.3 939,034 - HGI48_RS04485 0.31 -2.5 939,114 + HGI48_RS04485 0.38 +0.7 939,180 + HGI48_RS04485 0.43 +0.0 939,180 + HGI48_RS04485 0.43 +0.1 939,181 - HGI48_RS04485 0.44 +0.7 939,181 - HGI48_RS04485 0.44 -2.3 939,358 - HGI48_RS04485 0.59 -1.2 939,397 + HGI48_RS04485 0.62 +0.1 939,397 + HGI48_RS04485 0.62 +0.0 939,444 - HGI48_RS04485 0.66 -1.3 939,543 - HGI48_RS04485 0.75 +1.1 939,559 + HGI48_RS04485 0.76 +0.7 939,559 + HGI48_RS04485 0.76 -0.9 939,560 - HGI48_RS04485 0.76 +0.3 939,615 + HGI48_RS04485 0.81 -0.7 939,615 + -0.9 939,616 - +1.7 939,616 - HGI48_RS04485 0.81 +0.3 939,616 - +1.3 939,616 - HGI48_RS04485 0.81 -1.7 939,616 - HGI48_RS04485 0.81 -1.3 939,713 + HGI48_RS04485 0.89 -1.3 939,713 + HGI48_RS04485 0.89 -0.8 939,713 + HGI48_RS04485 0.89 -0.2 939,714 - HGI48_RS04485 0.90 +0.3 939,714 - HGI48_RS04485 0.90 -0.9 939,780 + -2.3 939,834 + +0.4 939,834 + -1.3 939,834 + +0.1 939,834 + -0.5 939,835 - -0.3 939,835 - +0.3 939,835 - -1.2 939,835 - -0.7 939,835 - -0.9 939,835 - -2.3 939,835 - -0.3 939,835 - +2.7 939,835 - +2.4 939,835 - -0.3 939,835 - +1.3 939,838 + -2.1 939,839 - -2.5 939,863 - +1.3 939,911 + -2.0 939,911 + -1.7 939,973 - +0.5 940,009 + HGI48_RS04490 0.10 +0.3 940,009 + HGI48_RS04490 0.10 -1.7 940,009 + HGI48_RS04490 0.10 -0.3 940,010 - HGI48_RS04490 0.11 -2.1 940,010 - HGI48_RS04490 0.11 -1.9 940,282 + HGI48_RS04490 0.28 +2.7 940,283 - HGI48_RS04490 0.28 -0.7 940,283 - HGI48_RS04490 0.28 +1.2 940,347 + HGI48_RS04490 0.32 -0.1 940,347 + HGI48_RS04490 0.32 -1.4 940,347 + HGI48_RS04490 0.32 -0.6 940,347 + -0.3 940,348 - HGI48_RS04490 0.33 -2.1 940,436 - HGI48_RS04490 0.38 -0.3 940,521 + HGI48_RS04490 0.44 +0.5 940,522 - HGI48_RS04490 0.44 -0.6 940,522 - HGI48_RS04490 0.44 -0.5 940,611 + HGI48_RS04490 0.50 +0.0 940,611 + HGI48_RS04490 0.50 +1.3 940,612 - HGI48_RS04490 0.50 +0.3 940,612 - HGI48_RS04490 0.50 -0.5 940,638 + HGI48_RS04490 0.51 +0.3 940,660 - HGI48_RS04490 0.53 -0.7 940,669 + +1.7 940,670 - +0.1 940,670 - HGI48_RS04490 0.54 -0.0 940,803 + HGI48_RS04490 0.62 -0.2 940,869 + HGI48_RS04490 0.66 +0.3 940,869 + HGI48_RS04490 0.66 -0.2 940,918 + HGI48_RS04490 0.70 -0.3 940,918 + HGI48_RS04490 0.70 -2.3 940,918 + HGI48_RS04490 0.70 -2.7 940,918 + HGI48_RS04490 0.70 -0.2 940,920 + HGI48_RS04490 0.70 +1.7 940,920 + HGI48_RS04490 0.70 -0.5 940,920 + HGI48_RS04490 0.70 -0.1 940,920 + HGI48_RS04490 0.70 +0.2 940,920 + HGI48_RS04490 0.70 -2.1 940,920 + HGI48_RS04490 0.70 -1.2 940,920 + HGI48_RS04490 0.70 -0.4 940,920 + HGI48_RS04490 0.70 +0.5 940,920 + HGI48_RS04490 0.70 +0.4 940,920 + HGI48_RS04490 0.70 +0.2 940,920 + HGI48_RS04490 0.70 -1.9 940,920 + -0.9 940,921 - HGI48_RS04490 0.70 +0.1 940,921 - HGI48_RS04490 0.70 -1.9 940,921 - HGI48_RS04490 0.70 +0.3 940,921 - +0.7 940,921 - HGI48_RS04490 0.70 -0.3 940,921 - HGI48_RS04490 0.70 -0.7 940,921 - HGI48_RS04490 0.70 -0.9 940,921 - HGI48_RS04490 0.70 -1.3 940,921 - HGI48_RS04490 0.70 +0.9 940,921 - HGI48_RS04490 0.70 +0.3 940,921 - HGI48_RS04490 0.70 +0.1 941,082 + HGI48_RS04490 0.80 +0.9 941,163 + HGI48_RS04490 0.86 -1.3 941,164 - HGI48_RS04490 0.86 -1.7 941,164 - HGI48_RS04490 0.86 -0.7 941,164 - HGI48_RS04490 0.86 -0.7 941,271 + -1.3 941,271 + -0.6 941,271 + -0.1 941,279 - -0.3 941,279 - +0.5 941,280 + -1.9 941,280 + -0.9 941,280 + -0.7 941,281 - +0.3 941,281 - +0.1 941,281 - -0.5 941,281 - -1.3 941,327 + -0.1 941,327 + -0.1 941,327 + -1.3 941,327 + -0.2 941,359 + +0.7 941,360 - -0.3 941,360 - +1.7 941,360 - -1.9 941,360 - -0.2 941,368 + -0.9 941,377 + +0.3 941,378 - +0.2 941,378 - -0.3 941,378 - +2.0 941,404 - -0.3 941,404 - +0.6 941,406 + +0.1 941,413 - -1.3 941,413 - +0.7 941,416 + -1.7 941,416 + +0.3 941,416 + +0.3 941,416 + +0.3 941,416 + +1.5 941,417 - +0.9 941,559 + -1.9 941,559 + -0.5 941,560 - -0.1 941,560 - +0.2 941,652 + -0.3 941,652 + +0.7 941,652 + -1.2 941,652 + -1.3 941,653 - -1.2 941,653 - -1.7 941,653 - -0.1 941,681 + +0.2 941,837 + HGI48_RS04495 0.19 +0.5 941,838 - HGI48_RS04495 0.19 -0.7 941,838 - HGI48_RS04495 0.19 +0.2 942,175 + HGI48_RS04495 0.41 -0.9 942,175 + HGI48_RS04495 0.41 -0.7 942,176 - HGI48_RS04495 0.41 -0.7 942,176 - HGI48_RS04495 0.41 -0.7 942,176 - HGI48_RS04495 0.41 -0.2 942,176 - HGI48_RS04495 0.41 -0.3 942,269 + HGI48_RS04495 0.47 -1.3 942,270 - HGI48_RS04495 0.47 -0.3 942,270 - HGI48_RS04495 0.47 -1.9 942,270 - HGI48_RS04495 0.47 -1.1
Or see this region's nucleotide sequence