Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03605 and HGI48_RS03610 overlap by 4 nucleotides HGI48_RS03610 and HGI48_RS03615 overlap by 8 nucleotides HGI48_RS03615 and HGI48_RS03620 are separated by 42 nucleotides
HGI48_RS03605: HGI48_RS03605 - ABC transporter permease, at 763,835 to 764,893
_RS03605
HGI48_RS03610: HGI48_RS03610 - ABC transporter permease, at 764,890 to 765,795
_RS03610
HGI48_RS03615: HGI48_RS03615 - ABC transporter ATP-binding protein, at 765,788 to 766,663
_RS03615
HGI48_RS03620: HGI48_RS03620 - ABC transporter ATP-binding protein, at 766,706 to 767,479
_RS03620
Position (kb) 765
766
767 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 764.861 kb on + strand at 764.861 kb on + strand at 764.861 kb on + strand at 764.861 kb on + strand at 764.861 kb on + strand at 764.861 kb on + strand at 764.889 kb on + strand at 764.931 kb on + strand at 764.932 kb on - strand at 765.181 kb on + strand, within HGI48_RS03610 at 765.182 kb on - strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.205 kb on - strand at 765.271 kb on + strand, within HGI48_RS03610 at 765.488 kb on + strand, within HGI48_RS03610 at 765.489 kb on - strand, within HGI48_RS03610 at 765.489 kb on - strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.677 kb on - strand, within HGI48_RS03610 at 765.677 kb on - strand, within HGI48_RS03610 at 765.677 kb on - strand, within HGI48_RS03610 at 765.677 kb on - strand, within HGI48_RS03610 at 765.764 kb on + strand at 765.764 kb on + strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.793 kb on + strand at 765.793 kb on + strand at 765.793 kb on + strand at 765.794 kb on - strand at 765.794 kb on - strand at 765.794 kb on - strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.817 kb on + strand at 765.817 kb on + strand at 766.124 kb on + strand at 766.124 kb on + strand, within HGI48_RS03615 at 766.124 kb on + strand, within HGI48_RS03615 at 766.125 kb on - strand, within HGI48_RS03615 at 766.172 kb on + strand, within HGI48_RS03615 at 766.172 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.313 kb on - strand, within HGI48_RS03615 at 766.313 kb on - strand, within HGI48_RS03615 at 766.333 kb on - strand, within HGI48_RS03615 at 766.453 kb on + strand, within HGI48_RS03615 at 766.508 kb on + strand, within HGI48_RS03615 at 766.508 kb on + strand at 766.509 kb on - strand, within HGI48_RS03615 at 766.509 kb on - strand, within HGI48_RS03615 at 766.654 kb on + strand at 766.672 kb on + strand at 766.672 kb on + strand at 766.673 kb on - strand at 766.687 kb on - strand at 766.721 kb on - strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.871 kb on - strand, within HGI48_RS03620 at 766.871 kb on - strand at 766.890 kb on + strand, within HGI48_RS03620 at 766.890 kb on + strand, within HGI48_RS03620 at 766.891 kb on - strand, within HGI48_RS03620 at 767.025 kb on + strand, within HGI48_RS03620 at 767.025 kb on + strand, within HGI48_RS03620 at 767.026 kb on - strand, within HGI48_RS03620 at 767.026 kb on - strand, within HGI48_RS03620 at 767.068 kb on - strand, within HGI48_RS03620 at 767.256 kb on + strand, within HGI48_RS03620 at 767.274 kb on + strand, within HGI48_RS03620 at 767.274 kb on + strand, within HGI48_RS03620 at 767.275 kb on - strand, within HGI48_RS03620 at 767.275 kb on - strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand at 767.326 kb on + strand, within HGI48_RS03620 at 767.353 kb on + strand, within HGI48_RS03620 at 767.382 kb on + strand, within HGI48_RS03620 at 767.409 kb on - strand at 767.409 kb on - strand at 767.410 kb on + strand at 767.410 kb on + strand at 767.411 kb on - strand at 767.411 kb on - strand at 767.442 kb on - strand at 767.477 kb on + strand at 767.478 kb on - strand at 767.478 kb on - strand at 767.506 kb on + strand at 767.506 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.646 kb on + strand at 767.647 kb on - strand at 767.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 764,861 + -1.8 764,861 + -1.8 764,861 + +1.0 764,861 + +0.1 764,861 + -0.2 764,861 + -0.2 764,889 + +0.8 764,931 + -0.8 764,932 - -0.8 765,181 + HGI48_RS03610 0.32 -0.2 765,182 - HGI48_RS03610 0.32 -0.0 765,202 + HGI48_RS03610 0.34 -0.1 765,202 + HGI48_RS03610 0.34 +0.4 765,202 + HGI48_RS03610 0.34 +0.3 765,202 + HGI48_RS03610 0.34 +5.1 765,202 + HGI48_RS03610 0.34 -0.8 765,202 + HGI48_RS03610 0.34 -0.2 765,202 + HGI48_RS03610 0.34 +0.5 765,202 + HGI48_RS03610 0.34 +1.3 765,202 + HGI48_RS03610 0.34 -1.2 765,203 - HGI48_RS03610 0.35 +0.3 765,203 - HGI48_RS03610 0.35 +0.2 765,203 - HGI48_RS03610 0.35 +0.9 765,203 - HGI48_RS03610 0.35 +0.3 765,203 - HGI48_RS03610 0.35 -2.2 765,203 - HGI48_RS03610 0.35 -2.4 765,205 - +1.3 765,271 + HGI48_RS03610 0.42 +0.1 765,488 + HGI48_RS03610 0.66 +1.0 765,489 - HGI48_RS03610 0.66 +0.2 765,489 - HGI48_RS03610 0.66 +0.2 765,676 + HGI48_RS03610 0.87 -0.5 765,676 + HGI48_RS03610 0.87 -1.2 765,676 + HGI48_RS03610 0.87 -0.7 765,676 + HGI48_RS03610 0.87 +1.2 765,676 + HGI48_RS03610 0.87 -0.5 765,676 + HGI48_RS03610 0.87 -0.2 765,677 - HGI48_RS03610 0.87 +0.3 765,677 - HGI48_RS03610 0.87 +0.8 765,677 - HGI48_RS03610 0.87 +1.4 765,677 - HGI48_RS03610 0.87 +1.1 765,764 + +1.2 765,764 + +0.8 765,765 - -1.0 765,765 - +0.0 765,765 - -0.7 765,765 - +1.5 765,793 + +0.3 765,793 + -0.5 765,793 + -0.1 765,794 - +1.8 765,794 - +0.8 765,794 - +1.8 765,801 + -0.8 765,801 + -0.1 765,801 + +0.2 765,801 + +2.1 765,801 + +2.1 765,801 + -1.1 765,801 + +0.8 765,801 + -0.1 765,802 - +0.2 765,802 - -0.4 765,802 - -0.2 765,802 - +0.5 765,802 - -1.1 765,802 - -0.6 765,802 - +0.8 765,817 + +1.0 765,817 + +0.2 766,124 + +1.3 766,124 + HGI48_RS03615 0.38 -2.2 766,124 + HGI48_RS03615 0.38 -1.8 766,125 - HGI48_RS03615 0.38 +0.5 766,172 + HGI48_RS03615 0.44 +0.1 766,172 + HGI48_RS03615 0.44 +0.8 766,312 + HGI48_RS03615 0.60 -0.0 766,312 + HGI48_RS03615 0.60 +1.4 766,312 + HGI48_RS03615 0.60 +0.5 766,312 + HGI48_RS03615 0.60 -0.6 766,313 - HGI48_RS03615 0.60 +0.7 766,313 - HGI48_RS03615 0.60 +0.8 766,333 - HGI48_RS03615 0.62 +0.4 766,453 + HGI48_RS03615 0.76 -0.7 766,508 + HGI48_RS03615 0.82 -0.1 766,508 + +0.8 766,509 - HGI48_RS03615 0.82 -2.6 766,509 - HGI48_RS03615 0.82 -0.8 766,654 + +0.8 766,672 + +0.2 766,672 + -0.2 766,673 - -0.7 766,687 - +0.3 766,721 - -0.5 766,769 + +0.3 766,769 + -1.1 766,769 + -0.4 766,769 + -0.4 766,769 + +0.3 766,769 + +0.5 766,770 - +0.0 766,770 - +1.1 766,770 - +0.2 766,770 - -1.4 766,770 - +0.8 766,770 - +0.3 766,770 - -0.8 766,770 - -0.2 766,871 - HGI48_RS03620 0.21 -0.2 766,871 - +0.2 766,890 + HGI48_RS03620 0.24 +1.0 766,890 + HGI48_RS03620 0.24 -2.0 766,891 - HGI48_RS03620 0.24 +0.3 767,025 + HGI48_RS03620 0.41 -0.1 767,025 + HGI48_RS03620 0.41 +1.6 767,026 - HGI48_RS03620 0.41 -0.4 767,026 - HGI48_RS03620 0.41 +0.2 767,068 - HGI48_RS03620 0.47 -1.8 767,256 + HGI48_RS03620 0.71 -1.2 767,274 + HGI48_RS03620 0.73 +1.0 767,274 + HGI48_RS03620 0.73 -0.1 767,275 - HGI48_RS03620 0.74 +1.2 767,275 - HGI48_RS03620 0.74 -1.2 767,279 + HGI48_RS03620 0.74 -2.0 767,279 + HGI48_RS03620 0.74 -0.5 767,279 + HGI48_RS03620 0.74 +1.0 767,279 + HGI48_RS03620 0.74 +0.9 767,280 - HGI48_RS03620 0.74 +0.2 767,280 - HGI48_RS03620 0.74 +0.0 767,280 - HGI48_RS03620 0.74 -0.8 767,280 - +1.3 767,326 + HGI48_RS03620 0.80 -0.6 767,353 + HGI48_RS03620 0.84 +0.2 767,382 + HGI48_RS03620 0.87 -1.6 767,409 - -0.3 767,409 - +0.5 767,410 + -0.2 767,410 + +0.8 767,411 - +0.8 767,411 - -1.7 767,442 - -1.2 767,477 + -1.2 767,478 - +0.8 767,478 - +0.4 767,506 + -0.9 767,506 + +1.5 767,635 + +0.1 767,635 + +0.3 767,635 + -1.0 767,635 + -1.7 767,635 + -1.0 767,635 + -1.2 767,636 - -0.4 767,636 - +1.8 767,636 - -0.2 767,636 - +0.5 767,636 - +1.9 767,636 - +0.5 767,636 - -0.8 767,636 - +1.0 767,640 - -0.6 767,640 - -1.0 767,646 + -2.6 767,647 - -0.6 767,647 - -0.0
Or see this region's nucleotide sequence