Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02985 and HGI48_RS02990 are separated by 2 nucleotides HGI48_RS02990 and HGI48_RS02995 are separated by 92 nucleotides HGI48_RS02995 and HGI48_RS03000 overlap by 1 nucleotides HGI48_RS03000 and HGI48_RS03005 are separated by 3 nucleotides HGI48_RS03005 and HGI48_RS03010 overlap by 14 nucleotides HGI48_RS03010 and HGI48_RS03015 overlap by 4 nucleotides
HGI48_RS02985: HGI48_RS02985 - phage major capsid protein, P2 family, at 641,670 to 642,779
_RS02985
HGI48_RS02990: HGI48_RS02990 - hypothetical protein, at 642,782 to 643,444
_RS02990
HGI48_RS02995: HGI48_RS02995 - head completion/stabilization protein, at 643,537 to 644,001
_RS02995
HGI48_RS03000: HGI48_RS03000 - tail protein X, at 644,001 to 644,204
_RS03000
HGI48_RS03005: HGI48_RS03005 - phage holin family protein, at 644,208 to 644,504
_RS03005
HGI48_RS03010: HGI48_RS03010 - glycoside hydrolase family 104 protein, at 644,491 to 644,982
_RS03010
HGI48_RS03015: HGI48_RS03015 - LysB family phage lysis regulatory protein, at 644,979 to 645,428
_RS03015
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1
2 at 642.551 kb on + strand, within HGI48_RS02985 at 642.551 kb on + strand, within HGI48_RS02985 at 642.551 kb on + strand, within HGI48_RS02985 at 642.551 kb on + strand, within HGI48_RS02985 at 642.552 kb on - strand, within HGI48_RS02985 at 642.552 kb on - strand, within HGI48_RS02985 at 642.555 kb on + strand, within HGI48_RS02985 at 642.555 kb on + strand, within HGI48_RS02985 at 642.556 kb on - strand, within HGI48_RS02985 at 642.642 kb on + strand, within HGI48_RS02985 at 642.642 kb on + strand, within HGI48_RS02985 at 642.642 kb on + strand, within HGI48_RS02985 at 642.642 kb on + strand, within HGI48_RS02985 at 642.643 kb on - strand, within HGI48_RS02985 at 642.643 kb on - strand, within HGI48_RS02985 at 642.643 kb on - strand, within HGI48_RS02985 at 642.643 kb on - strand, within HGI48_RS02985 at 642.658 kb on - strand, within HGI48_RS02985 at 642.658 kb on - strand, within HGI48_RS02985 at 642.817 kb on + strand at 642.873 kb on - strand, within HGI48_RS02990 at 642.922 kb on + strand, within HGI48_RS02990 at 642.922 kb on + strand, within HGI48_RS02990 at 642.922 kb on + strand at 643.133 kb on + strand, within HGI48_RS02990 at 643.134 kb on - strand, within HGI48_RS02990 at 643.154 kb on - strand, within HGI48_RS02990 at 643.290 kb on - strand, within HGI48_RS02990 at 643.290 kb on - strand, within HGI48_RS02990 at 643.443 kb on - strand at 643.585 kb on - strand, within HGI48_RS02995 at 643.752 kb on + strand, within HGI48_RS02995 at 643.752 kb on + strand, within HGI48_RS02995 at 643.769 kb on + strand, within HGI48_RS02995 at 643.770 kb on - strand, within HGI48_RS02995 at 643.770 kb on - strand, within HGI48_RS02995 at 643.770 kb on - strand, within HGI48_RS02995 at 643.870 kb on + strand, within HGI48_RS02995 at 643.871 kb on - strand, within HGI48_RS02995 at 644.000 kb on - strand at 644.000 kb on - strand at 644.207 kb on + strand at 644.207 kb on + strand at 644.208 kb on - strand at 644.208 kb on - strand at 644.208 kb on - strand at 644.228 kb on + strand at 644.229 kb on - strand at 644.229 kb on - strand at 644.502 kb on + strand at 644.503 kb on - strand at 644.717 kb on - strand, within HGI48_RS03010 at 644.728 kb on + strand, within HGI48_RS03010 at 644.728 kb on + strand, within HGI48_RS03010 at 644.729 kb on - strand, within HGI48_RS03010 at 644.729 kb on - strand, within HGI48_RS03010 at 644.729 kb on - strand at 644.746 kb on + strand at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand at 644.746 kb on + strand, within HGI48_RS03010 at 644.746 kb on + strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand at 644.747 kb on - strand, within HGI48_RS03010 at 644.747 kb on - strand, within HGI48_RS03010 at 644.748 kb on + strand, within HGI48_RS03010 at 644.748 kb on + strand, within HGI48_RS03010 at 644.841 kb on - strand, within HGI48_RS03010 at 644.853 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.880 kb on + strand, within HGI48_RS03010 at 644.881 kb on - strand, within HGI48_RS03010 at 644.953 kb on + strand at 644.953 kb on + strand at 644.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 642,551 + HGI48_RS02985 0.79 -0.5 642,551 + HGI48_RS02985 0.79 -0.5 642,551 + HGI48_RS02985 0.79 -0.1 642,551 + HGI48_RS02985 0.79 -0.3 642,552 - HGI48_RS02985 0.79 +0.3 642,552 - HGI48_RS02985 0.79 -0.4 642,555 + HGI48_RS02985 0.80 -0.2 642,555 + HGI48_RS02985 0.80 -1.5 642,556 - HGI48_RS02985 0.80 +0.2 642,642 + HGI48_RS02985 0.88 -1.7 642,642 + HGI48_RS02985 0.88 -1.2 642,642 + HGI48_RS02985 0.88 -2.0 642,642 + HGI48_RS02985 0.88 -1.4 642,643 - HGI48_RS02985 0.88 -0.1 642,643 - HGI48_RS02985 0.88 +1.0 642,643 - HGI48_RS02985 0.88 -0.5 642,643 - HGI48_RS02985 0.88 +0.4 642,658 - HGI48_RS02985 0.89 -0.4 642,658 - HGI48_RS02985 0.89 -1.8 642,817 + +2.1 642,873 - HGI48_RS02990 0.14 +0.3 642,922 + HGI48_RS02990 0.21 +0.4 642,922 + HGI48_RS02990 0.21 -1.5 642,922 + +0.2 643,133 + HGI48_RS02990 0.53 -0.0 643,134 - HGI48_RS02990 0.53 +0.1 643,154 - HGI48_RS02990 0.56 -0.8 643,290 - HGI48_RS02990 0.77 -1.5 643,290 - HGI48_RS02990 0.77 +0.4 643,443 - +0.6 643,585 - HGI48_RS02995 0.10 -1.9 643,752 + HGI48_RS02995 0.46 -1.5 643,752 + HGI48_RS02995 0.46 -0.2 643,769 + HGI48_RS02995 0.50 -1.2 643,770 - HGI48_RS02995 0.50 -2.0 643,770 - HGI48_RS02995 0.50 -1.2 643,770 - HGI48_RS02995 0.50 -0.8 643,870 + HGI48_RS02995 0.72 -0.2 643,871 - HGI48_RS02995 0.72 -1.9 644,000 - +0.8 644,000 - -1.1 644,207 + +0.8 644,207 + +1.5 644,208 - +0.3 644,208 - +0.8 644,208 - +0.2 644,228 + +0.1 644,229 - -0.2 644,229 - +0.0 644,502 + +0.8 644,503 - +0.1 644,717 - HGI48_RS03010 0.46 +1.2 644,728 + HGI48_RS03010 0.48 -1.3 644,728 + HGI48_RS03010 0.48 -0.0 644,729 - HGI48_RS03010 0.48 -1.2 644,729 - HGI48_RS03010 0.48 +1.0 644,729 - +1.2 644,746 + +1.8 644,746 + HGI48_RS03010 0.52 -0.6 644,746 + HGI48_RS03010 0.52 -0.2 644,746 + +1.8 644,746 + HGI48_RS03010 0.52 +0.5 644,746 + HGI48_RS03010 0.52 -0.2 644,747 - HGI48_RS03010 0.52 +0.6 644,747 - HGI48_RS03010 0.52 -1.5 644,747 - +0.2 644,747 - HGI48_RS03010 0.52 +0.5 644,747 - HGI48_RS03010 0.52 +0.0 644,748 + HGI48_RS03010 0.52 +0.8 644,748 + HGI48_RS03010 0.52 -1.2 644,841 - HGI48_RS03010 0.71 -0.5 644,853 + HGI48_RS03010 0.74 +1.1 644,880 + HGI48_RS03010 0.79 -0.5 644,880 + HGI48_RS03010 0.79 +1.1 644,880 + HGI48_RS03010 0.79 -0.1 644,881 - HGI48_RS03010 0.79 +0.7 644,953 + -1.7 644,953 + -0.2 644,954 - -0.5
Or see this region's nucleotide sequence