Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02865 and HGI48_RS02870 are separated by 544 nucleotides HGI48_RS02870 and HGI48_RS02875 are separated by 70 nucleotides
HGI48_RS02865: HGI48_RS02865 - FAD:protein FMN transferase ApbE, at 618,210 to 619,256
_RS02865
HGI48_RS02870: HGI48_RS02870 - flavocytochrome c, at 619,801 to 622,578
_RS02870
HGI48_RS02875: HGI48_RS02875 - FAD:protein FMN transferase, at 622,649 to 623,620
_RS02875
Position (kb) 619
620
621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 618.822 kb on + strand, within HGI48_RS02865 at 618.985 kb on - strand, within HGI48_RS02865 at 619.009 kb on - strand, within HGI48_RS02865 at 619.047 kb on - strand, within HGI48_RS02865 at 619.299 kb on + strand at 619.320 kb on + strand at 619.320 kb on + strand at 619.322 kb on + strand at 619.322 kb on + strand at 619.322 kb on + strand at 619.322 kb on + strand at 619.322 kb on + strand at 619.323 kb on - strand at 619.323 kb on - strand at 619.487 kb on - strand at 619.492 kb on + strand at 619.582 kb on + strand at 619.641 kb on - strand at 619.659 kb on - strand at 619.700 kb on + strand at 619.704 kb on - strand at 619.704 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.800 kb on + strand at 619.820 kb on + strand at 619.821 kb on - strand at 619.903 kb on + strand at 619.903 kb on + strand at 619.936 kb on + strand at 619.936 kb on + strand at 619.936 kb on + strand at 619.937 kb on - strand at 619.939 kb on + strand at 619.939 kb on + strand at 619.939 kb on + strand at 619.940 kb on - strand at 619.940 kb on - strand at 619.940 kb on - strand at 619.947 kb on - strand at 619.998 kb on + strand at 620.113 kb on + strand, within HGI48_RS02870 at 620.113 kb on + strand, within HGI48_RS02870 at 620.113 kb on + strand, within HGI48_RS02870 at 620.114 kb on - strand, within HGI48_RS02870 at 620.114 kb on - strand, within HGI48_RS02870 at 620.114 kb on - strand, within HGI48_RS02870 at 620.320 kb on - strand, within HGI48_RS02870 at 620.320 kb on - strand, within HGI48_RS02870 at 620.320 kb on - strand, within HGI48_RS02870 at 620.320 kb on - strand at 620.323 kb on + strand, within HGI48_RS02870 at 620.323 kb on + strand, within HGI48_RS02870 at 620.324 kb on - strand, within HGI48_RS02870 at 620.324 kb on - strand, within HGI48_RS02870 at 620.324 kb on - strand, within HGI48_RS02870 at 620.324 kb on - strand at 620.324 kb on - strand, within HGI48_RS02870 at 620.342 kb on - strand, within HGI48_RS02870 at 620.342 kb on - strand at 620.533 kb on + strand, within HGI48_RS02870 at 620.534 kb on - strand, within HGI48_RS02870 at 620.534 kb on - strand at 620.534 kb on - strand, within HGI48_RS02870 at 620.570 kb on - strand, within HGI48_RS02870 at 620.616 kb on + strand, within HGI48_RS02870 at 620.617 kb on - strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.712 kb on + strand at 620.712 kb on + strand, within HGI48_RS02870 at 620.712 kb on + strand, within HGI48_RS02870 at 620.746 kb on + strand, within HGI48_RS02870 at 620.746 kb on + strand, within HGI48_RS02870 at 620.747 kb on - strand, within HGI48_RS02870 at 620.775 kb on + strand, within HGI48_RS02870 at 620.775 kb on + strand, within HGI48_RS02870 at 620.775 kb on + strand, within HGI48_RS02870 at 620.776 kb on - strand, within HGI48_RS02870 at 620.776 kb on - strand, within HGI48_RS02870 at 621.039 kb on + strand, within HGI48_RS02870 at 621.039 kb on + strand, within HGI48_RS02870 at 621.040 kb on - strand, within HGI48_RS02870 at 621.040 kb on - strand, within HGI48_RS02870 at 621.040 kb on - strand, within HGI48_RS02870 at 621.207 kb on + strand at 621.208 kb on - strand, within HGI48_RS02870 at 621.244 kb on + strand, within HGI48_RS02870 at 621.244 kb on + strand, within HGI48_RS02870 at 621.258 kb on - strand, within HGI48_RS02870 at 621.411 kb on - strand at 621.411 kb on - strand, within HGI48_RS02870 at 621.443 kb on - strand, within HGI48_RS02870 at 621.564 kb on + strand, within HGI48_RS02870 at 621.706 kb on - strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.747 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand at 621.976 kb on - strand, within HGI48_RS02870 at 621.982 kb on + strand, within HGI48_RS02870 at 621.982 kb on + strand, within HGI48_RS02870 at 621.983 kb on - strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand at 622.109 kb on - strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.117 kb on - strand, within HGI48_RS02870 at 622.165 kb on + strand, within HGI48_RS02870 at 622.165 kb on + strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.264 kb on + strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.348 kb on + strand at 622.348 kb on + strand at 622.348 kb on + strand at 622.349 kb on - strand at 622.398 kb on + strand at 622.564 kb on + strand at 622.564 kb on + strand at 622.564 kb on + strand at 622.565 kb on - strand at 622.565 kb on - strand at 622.565 kb on - strand at 622.568 kb on + strand at 622.568 kb on + strand at 622.569 kb on - strand at 622.569 kb on - strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.579 kb on + strand at 622.580 kb on - strand at 622.686 kb on + strand at 622.687 kb on - strand at 622.687 kb on - strand at 622.856 kb on - strand at 622.876 kb on + strand, within HGI48_RS02875 at 622.919 kb on - strand, within HGI48_RS02875 at 623.058 kb on + strand, within HGI48_RS02875 at 623.111 kb on + strand, within HGI48_RS02875 at 623.111 kb on + strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand at 623.113 kb on + strand, within HGI48_RS02875 at 623.113 kb on + strand, within HGI48_RS02875 at 623.156 kb on + strand at 623.156 kb on + strand, within HGI48_RS02875 at 623.157 kb on - strand, within HGI48_RS02875 at 623.157 kb on - strand, within HGI48_RS02875 at 623.321 kb on + strand, within HGI48_RS02875 at 623.321 kb on + strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.331 kb on - strand, within HGI48_RS02875 at 623.331 kb on - strand, within HGI48_RS02875 at 623.362 kb on + strand at 623.363 kb on - strand at 623.363 kb on - strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand at 623.451 kb on - strand at 623.495 kb on + strand, within HGI48_RS02875 at 623.495 kb on + strand at 623.495 kb on + strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.573 kb on + strand at 623.573 kb on + strand at 623.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 618,822 + HGI48_RS02865 0.58 -0.4 618,985 - HGI48_RS02865 0.74 +0.4 619,009 - HGI48_RS02865 0.76 -1.1 619,047 - HGI48_RS02865 0.80 +0.2 619,299 + +1.2 619,320 + -0.8 619,320 + +0.2 619,322 + -1.2 619,322 + -1.0 619,322 + -0.9 619,322 + +0.2 619,322 + -1.5 619,323 - -0.8 619,323 - +0.5 619,487 - -0.1 619,492 + +0.2 619,582 + -0.8 619,641 - -0.9 619,659 - -1.7 619,700 + +1.2 619,704 - +0.5 619,704 - +0.8 619,782 - +0.3 619,782 - +1.3 619,800 + -0.5 619,820 + -0.4 619,821 - +0.8 619,903 + -1.8 619,903 + -0.0 619,936 + -1.5 619,936 + -1.1 619,936 + +0.5 619,937 - +0.8 619,939 + -1.2 619,939 + +0.4 619,939 + +1.0 619,940 - -1.2 619,940 - +1.1 619,940 - +0.0 619,947 - -0.8 619,998 + +0.7 620,113 + HGI48_RS02870 0.11 -1.3 620,113 + HGI48_RS02870 0.11 -0.4 620,113 + HGI48_RS02870 0.11 -0.2 620,114 - HGI48_RS02870 0.11 -0.6 620,114 - HGI48_RS02870 0.11 +1.4 620,114 - HGI48_RS02870 0.11 +0.4 620,320 - HGI48_RS02870 0.19 +0.3 620,320 - HGI48_RS02870 0.19 +0.9 620,320 - HGI48_RS02870 0.19 +0.5 620,320 - -0.2 620,323 + HGI48_RS02870 0.19 +0.2 620,323 + HGI48_RS02870 0.19 +0.0 620,324 - HGI48_RS02870 0.19 -1.4 620,324 - HGI48_RS02870 0.19 -0.0 620,324 - HGI48_RS02870 0.19 -1.6 620,324 - +0.2 620,324 - HGI48_RS02870 0.19 +1.8 620,342 - HGI48_RS02870 0.19 -1.8 620,342 - +0.2 620,533 + HGI48_RS02870 0.26 +0.2 620,534 - HGI48_RS02870 0.26 -0.1 620,534 - -0.2 620,534 - HGI48_RS02870 0.26 +1.4 620,570 - HGI48_RS02870 0.28 -2.2 620,616 + HGI48_RS02870 0.29 -0.8 620,617 - HGI48_RS02870 0.29 +0.1 620,647 + HGI48_RS02870 0.30 -1.8 620,647 + HGI48_RS02870 0.30 -2.2 620,647 + HGI48_RS02870 0.30 +0.0 620,647 + HGI48_RS02870 0.30 +0.5 620,647 + HGI48_RS02870 0.30 +1.0 620,648 - HGI48_RS02870 0.30 -1.2 620,648 - HGI48_RS02870 0.30 -0.4 620,648 - HGI48_RS02870 0.30 -0.0 620,648 - HGI48_RS02870 0.30 -0.8 620,648 - HGI48_RS02870 0.30 +0.0 620,712 + +0.8 620,712 + HGI48_RS02870 0.33 +0.8 620,712 + HGI48_RS02870 0.33 -0.6 620,746 + HGI48_RS02870 0.34 -0.8 620,746 + HGI48_RS02870 0.34 +0.6 620,747 - HGI48_RS02870 0.34 -1.2 620,775 + HGI48_RS02870 0.35 +1.9 620,775 + HGI48_RS02870 0.35 -0.2 620,775 + HGI48_RS02870 0.35 -1.8 620,776 - HGI48_RS02870 0.35 -0.5 620,776 - HGI48_RS02870 0.35 -0.5 621,039 + HGI48_RS02870 0.45 -1.3 621,039 + HGI48_RS02870 0.45 +0.5 621,040 - HGI48_RS02870 0.45 +0.3 621,040 - HGI48_RS02870 0.45 -2.2 621,040 - HGI48_RS02870 0.45 +1.2 621,207 + -0.8 621,208 - HGI48_RS02870 0.51 -0.2 621,244 + HGI48_RS02870 0.52 -0.2 621,244 + HGI48_RS02870 0.52 +0.6 621,258 - HGI48_RS02870 0.52 -2.0 621,411 - +0.2 621,411 - HGI48_RS02870 0.58 -1.3 621,443 - HGI48_RS02870 0.59 -2.2 621,564 + HGI48_RS02870 0.63 -2.2 621,706 - HGI48_RS02870 0.69 +0.3 621,738 + HGI48_RS02870 0.70 -0.8 621,738 + HGI48_RS02870 0.70 -2.0 621,738 + HGI48_RS02870 0.70 -0.3 621,738 + HGI48_RS02870 0.70 -2.2 621,747 + HGI48_RS02870 0.70 -1.8 621,975 + HGI48_RS02870 0.78 -1.9 621,975 + HGI48_RS02870 0.78 +0.5 621,975 + HGI48_RS02870 0.78 -0.2 621,975 + HGI48_RS02870 0.78 -0.5 621,975 + HGI48_RS02870 0.78 +0.5 621,975 + HGI48_RS02870 0.78 -0.8 621,976 - HGI48_RS02870 0.78 +0.8 621,976 - HGI48_RS02870 0.78 -1.2 621,976 - HGI48_RS02870 0.78 +1.1 621,976 - +2.8 621,976 - HGI48_RS02870 0.78 -0.2 621,982 + HGI48_RS02870 0.79 +0.4 621,982 + HGI48_RS02870 0.79 -0.2 621,983 - HGI48_RS02870 0.79 +0.1 622,108 + HGI48_RS02870 0.83 -0.3 622,108 + HGI48_RS02870 0.83 -0.4 622,108 + HGI48_RS02870 0.83 -2.4 622,108 + HGI48_RS02870 0.83 -0.6 622,108 + HGI48_RS02870 0.83 -0.1 622,108 + HGI48_RS02870 0.83 -0.2 622,108 + HGI48_RS02870 0.83 +0.8 622,109 - HGI48_RS02870 0.83 -1.2 622,109 - HGI48_RS02870 0.83 -0.2 622,109 - HGI48_RS02870 0.83 -0.6 622,109 - +1.8 622,109 - HGI48_RS02870 0.83 +0.4 622,114 + HGI48_RS02870 0.83 -2.8 622,114 + HGI48_RS02870 0.83 +0.0 622,114 + HGI48_RS02870 0.83 +0.8 622,114 + HGI48_RS02870 0.83 -0.5 622,114 + HGI48_RS02870 0.83 -0.1 622,114 + HGI48_RS02870 0.83 -1.5 622,114 + HGI48_RS02870 0.83 -1.2 622,114 + HGI48_RS02870 0.83 -0.2 622,114 + HGI48_RS02870 0.83 -0.5 622,114 + HGI48_RS02870 0.83 +0.4 622,115 - HGI48_RS02870 0.83 +0.1 622,115 - HGI48_RS02870 0.83 -1.8 622,115 - HGI48_RS02870 0.83 -0.2 622,115 - HGI48_RS02870 0.83 +0.0 622,115 - HGI48_RS02870 0.83 -0.3 622,117 - HGI48_RS02870 0.83 -0.4 622,165 + HGI48_RS02870 0.85 -0.6 622,165 + HGI48_RS02870 0.85 -0.5 622,166 - HGI48_RS02870 0.85 +0.5 622,166 - HGI48_RS02870 0.85 +1.0 622,166 - HGI48_RS02870 0.85 -0.8 622,166 - HGI48_RS02870 0.85 -0.6 622,264 + HGI48_RS02870 0.89 -0.2 622,265 - HGI48_RS02870 0.89 -0.1 622,265 - HGI48_RS02870 0.89 -0.4 622,265 - HGI48_RS02870 0.89 -0.2 622,348 + +1.4 622,348 + -0.8 622,348 + +0.1 622,349 - -1.8 622,398 + -0.2 622,564 + -2.5 622,564 + -0.2 622,564 + +2.0 622,565 - -1.0 622,565 - +2.7 622,565 - -0.2 622,568 + -0.5 622,568 + +0.2 622,569 - +0.0 622,569 - -1.2 622,576 + -1.2 622,576 + -0.6 622,576 + +0.1 622,576 + -0.2 622,577 - -0.2 622,577 - -1.5 622,577 - +0.5 622,577 - +1.0 622,579 + -0.0 622,580 - +0.6 622,686 + +0.2 622,687 - +0.8 622,687 - +0.1 622,856 - +0.8 622,876 + HGI48_RS02875 0.23 -0.0 622,919 - HGI48_RS02875 0.28 -1.5 623,058 + HGI48_RS02875 0.42 +0.4 623,111 + HGI48_RS02875 0.48 -2.0 623,111 + HGI48_RS02875 0.48 +0.5 623,112 - HGI48_RS02875 0.48 -0.8 623,112 - HGI48_RS02875 0.48 +0.6 623,112 - HGI48_RS02875 0.48 +0.0 623,112 - +0.8 623,113 + HGI48_RS02875 0.48 -1.2 623,113 + HGI48_RS02875 0.48 -1.0 623,156 + -0.8 623,156 + HGI48_RS02875 0.52 -1.2 623,157 - HGI48_RS02875 0.52 -0.8 623,157 - HGI48_RS02875 0.52 -0.8 623,321 + HGI48_RS02875 0.69 +0.8 623,321 + HGI48_RS02875 0.69 +1.3 623,322 - HGI48_RS02875 0.69 -0.5 623,322 - HGI48_RS02875 0.69 +0.5 623,322 - HGI48_RS02875 0.69 -0.2 623,322 - HGI48_RS02875 0.69 -1.7 623,322 - HGI48_RS02875 0.69 +1.2 623,331 - HGI48_RS02875 0.70 -1.4 623,331 - HGI48_RS02875 0.70 +1.3 623,362 + +0.2 623,363 - +3.0 623,363 - HGI48_RS02875 0.73 +0.1 623,450 + HGI48_RS02875 0.82 -0.5 623,450 + HGI48_RS02875 0.82 -0.3 623,450 + HGI48_RS02875 0.82 -0.5 623,450 + HGI48_RS02875 0.82 +0.1 623,450 + HGI48_RS02875 0.82 -2.0 623,450 + HGI48_RS02875 0.82 +0.4 623,450 + HGI48_RS02875 0.82 -2.0 623,451 - HGI48_RS02875 0.83 -0.2 623,451 - HGI48_RS02875 0.83 +0.4 623,451 - HGI48_RS02875 0.83 +0.1 623,451 - HGI48_RS02875 0.83 +0.8 623,451 - HGI48_RS02875 0.83 +0.2 623,451 - -0.8 623,451 - +0.8 623,495 + HGI48_RS02875 0.87 -1.2 623,495 + -0.8 623,495 + HGI48_RS02875 0.87 +0.1 623,496 - HGI48_RS02875 0.87 -0.2 623,496 - HGI48_RS02875 0.87 -0.8 623,496 - HGI48_RS02875 0.87 -1.2 623,496 - HGI48_RS02875 0.87 -2.0 623,573 + +0.1 623,573 + -0.2 623,574 - +1.1
Or see this region's nucleotide sequence