Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02810 and HGI48_RS02815 are separated by 113 nucleotides HGI48_RS02815 and HGI48_RS02820 are separated by 54 nucleotides
HGI48_RS02810: HGI48_RS02810 - altronate dehydratase, at 605,613 to 607,103
_RS02810
HGI48_RS02815: HGI48_RS02815 - YgjV family protein, at 607,217 to 607,765
_RS02815
HGI48_RS02820: HGI48_RS02820 - TerC family protein, at 607,820 to 608,773
_RS02820
Position (kb) 607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 606.273 kb on - strand, within HGI48_RS02810 at 606.339 kb on + strand at 606.339 kb on + strand, within HGI48_RS02810 at 606.339 kb on + strand at 606.339 kb on + strand, within HGI48_RS02810 at 606.340 kb on - strand, within HGI48_RS02810 at 606.534 kb on - strand, within HGI48_RS02810 at 606.534 kb on - strand at 606.584 kb on + strand, within HGI48_RS02810 at 606.585 kb on - strand, within HGI48_RS02810 at 606.606 kb on + strand, within HGI48_RS02810 at 606.606 kb on + strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.621 kb on - strand at 606.629 kb on + strand, within HGI48_RS02810 at 606.629 kb on + strand, within HGI48_RS02810 at 606.629 kb on + strand, within HGI48_RS02810 at 606.630 kb on - strand, within HGI48_RS02810 at 606.630 kb on - strand, within HGI48_RS02810 at 606.633 kb on + strand, within HGI48_RS02810 at 606.633 kb on + strand, within HGI48_RS02810 at 606.674 kb on + strand, within HGI48_RS02810 at 606.674 kb on + strand, within HGI48_RS02810 at 606.675 kb on - strand, within HGI48_RS02810 at 606.744 kb on + strand, within HGI48_RS02810 at 606.745 kb on - strand, within HGI48_RS02810 at 606.745 kb on - strand at 606.745 kb on - strand, within HGI48_RS02810 at 606.745 kb on - strand, within HGI48_RS02810 at 606.745 kb on - strand, within HGI48_RS02810 at 606.745 kb on - strand, within HGI48_RS02810 at 606.761 kb on + strand, within HGI48_RS02810 at 606.761 kb on + strand, within HGI48_RS02810 at 606.761 kb on + strand, within HGI48_RS02810 at 607.079 kb on - strand at 607.082 kb on + strand at 607.082 kb on + strand at 607.101 kb on + strand at 607.102 kb on - strand at 607.102 kb on - strand at 607.102 kb on - strand at 607.102 kb on - strand at 607.114 kb on + strand at 607.114 kb on + strand at 607.115 kb on - strand at 607.115 kb on - strand at 607.116 kb on + strand at 607.116 kb on + strand at 607.116 kb on + strand at 607.117 kb on - strand at 607.117 kb on - strand at 607.204 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.325 kb on + strand, within HGI48_RS02815 at 607.326 kb on - strand, within HGI48_RS02815 at 607.327 kb on + strand, within HGI48_RS02815 at 607.453 kb on + strand, within HGI48_RS02815 at 607.453 kb on + strand, within HGI48_RS02815 at 607.668 kb on + strand, within HGI48_RS02815 at 607.669 kb on - strand at 607.681 kb on + strand, within HGI48_RS02815 at 607.681 kb on + strand, within HGI48_RS02815 at 607.682 kb on - strand, within HGI48_RS02815 at 607.682 kb on - strand, within HGI48_RS02815 at 607.682 kb on - strand, within HGI48_RS02815 at 607.699 kb on + strand, within HGI48_RS02815 at 607.699 kb on + strand, within HGI48_RS02815 at 607.699 kb on + strand, within HGI48_RS02815 at 607.784 kb on - strand at 607.817 kb on - strand at 607.871 kb on + strand at 607.871 kb on + strand at 607.872 kb on - strand at 607.872 kb on - strand at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.955 kb on - strand, within HGI48_RS02820 at 607.955 kb on - strand, within HGI48_RS02820 at 607.955 kb on - strand at 607.955 kb on - strand, within HGI48_RS02820 at 607.974 kb on + strand, within HGI48_RS02820 at 607.974 kb on + strand, within HGI48_RS02820 at 608.019 kb on + strand, within HGI48_RS02820 at 608.019 kb on + strand, within HGI48_RS02820 at 608.019 kb on + strand, within HGI48_RS02820 at 608.019 kb on + strand, within HGI48_RS02820 at 608.020 kb on - strand, within HGI48_RS02820 at 608.020 kb on - strand at 608.340 kb on + strand, within HGI48_RS02820 at 608.340 kb on + strand, within HGI48_RS02820 at 608.340 kb on + strand at 608.340 kb on + strand, within HGI48_RS02820 at 608.341 kb on - strand, within HGI48_RS02820 at 608.341 kb on - strand, within HGI48_RS02820 at 608.341 kb on - strand, within HGI48_RS02820 at 608.385 kb on - strand, within HGI48_RS02820 at 608.395 kb on + strand, within HGI48_RS02820 at 608.402 kb on + strand, within HGI48_RS02820 at 608.403 kb on - strand, within HGI48_RS02820 at 608.425 kb on - strand, within HGI48_RS02820 at 608.466 kb on + strand, within HGI48_RS02820 at 608.467 kb on - strand, within HGI48_RS02820 at 608.492 kb on + strand, within HGI48_RS02820 at 608.492 kb on + strand, within HGI48_RS02820 at 608.492 kb on + strand, within HGI48_RS02820 at 608.492 kb on + strand at 608.492 kb on + strand, within HGI48_RS02820 at 608.492 kb on + strand, within HGI48_RS02820 at 608.492 kb on + strand, within HGI48_RS02820 at 608.493 kb on - strand, within HGI48_RS02820 at 608.493 kb on - strand, within HGI48_RS02820 at 608.493 kb on - strand at 608.493 kb on - strand, within HGI48_RS02820 at 608.493 kb on - strand, within HGI48_RS02820 at 608.590 kb on - strand, within HGI48_RS02820 at 608.590 kb on - strand, within HGI48_RS02820 at 608.615 kb on + strand, within HGI48_RS02820 at 608.616 kb on - strand, within HGI48_RS02820 at 608.659 kb on + strand, within HGI48_RS02820 at 608.674 kb on + strand at 608.675 kb on - strand, within HGI48_RS02820 at 608.675 kb on - strand, within HGI48_RS02820 at 608.675 kb on - strand, within HGI48_RS02820 at 608.758 kb on + strand at 608.758 kb on + strand at 608.758 kb on + strand at 608.758 kb on + strand at 608.758 kb on + strand at 608.758 kb on + strand at 608.759 kb on - strand at 608.759 kb on - strand at 608.759 kb on - strand at 608.759 kb on - strand at 608.762 kb on + strand at 608.762 kb on + strand at 608.762 kb on + strand at 608.762 kb on + strand at 608.762 kb on + strand at 608.762 kb on + strand at 608.762 kb on + strand at 608.762 kb on + strand at 608.762 kb on + strand at 608.763 kb on - strand at 608.763 kb on - strand at 608.763 kb on - strand at 608.763 kb on - strand at 608.763 kb on - strand at 608.763 kb on - strand at 608.764 kb on + strand at 608.764 kb on + strand at 608.764 kb on + strand at 608.764 kb on + strand at 608.764 kb on + strand at 608.764 kb on + strand at 608.765 kb on - strand at 608.765 kb on - strand at 608.765 kb on - strand at 608.765 kb on - strand at 608.765 kb on - strand at 608.765 kb on - strand at 608.765 kb on - strand at 608.765 kb on - strand at 608.765 kb on - strand at 608.765 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 606,273 - HGI48_RS02810 0.44 -0.5 606,339 + -0.2 606,339 + HGI48_RS02810 0.49 -0.0 606,339 + +0.8 606,339 + HGI48_RS02810 0.49 -2.5 606,340 - HGI48_RS02810 0.49 -1.0 606,534 - HGI48_RS02810 0.62 +0.8 606,534 - -0.8 606,584 + HGI48_RS02810 0.65 -0.8 606,585 - HGI48_RS02810 0.65 -1.1 606,606 + HGI48_RS02810 0.67 -0.4 606,606 + HGI48_RS02810 0.67 +1.0 606,607 - HGI48_RS02810 0.67 +0.2 606,607 - HGI48_RS02810 0.67 -0.4 606,607 - HGI48_RS02810 0.67 +1.1 606,607 - HGI48_RS02810 0.67 -0.7 606,607 - HGI48_RS02810 0.67 -0.0 606,607 - HGI48_RS02810 0.67 -1.2 606,621 - +0.2 606,629 + HGI48_RS02810 0.68 -0.6 606,629 + HGI48_RS02810 0.68 -0.4 606,629 + HGI48_RS02810 0.68 +0.8 606,630 - HGI48_RS02810 0.68 -1.8 606,630 - HGI48_RS02810 0.68 -2.5 606,633 + HGI48_RS02810 0.68 +0.5 606,633 + HGI48_RS02810 0.68 -0.8 606,674 + HGI48_RS02810 0.71 +0.5 606,674 + HGI48_RS02810 0.71 -0.8 606,675 - HGI48_RS02810 0.71 -1.5 606,744 + HGI48_RS02810 0.76 -0.4 606,745 - HGI48_RS02810 0.76 -0.8 606,745 - -0.2 606,745 - HGI48_RS02810 0.76 -0.7 606,745 - HGI48_RS02810 0.76 -2.2 606,745 - HGI48_RS02810 0.76 +0.8 606,745 - HGI48_RS02810 0.76 +1.0 606,761 + HGI48_RS02810 0.77 -1.2 606,761 + HGI48_RS02810 0.77 -0.4 606,761 + HGI48_RS02810 0.77 +1.6 607,079 - +0.4 607,082 + +0.5 607,082 + -2.0 607,101 + +0.2 607,102 - +0.5 607,102 - +0.5 607,102 - -0.9 607,102 - -1.9 607,114 + -0.4 607,114 + +0.5 607,115 - +0.1 607,115 - -1.2 607,116 + -0.8 607,116 + +0.1 607,116 + -0.2 607,117 - -0.2 607,117 - +0.2 607,204 + +0.6 607,226 + -1.2 607,226 + -2.2 607,226 + -2.9 607,226 + -1.9 607,226 + +0.1 607,226 + +0.2 607,226 + +0.4 607,226 + -1.3 607,226 + +0.8 607,226 + -0.1 607,227 - +0.2 607,227 - -0.6 607,227 - -0.2 607,227 - -0.8 607,227 - +0.2 607,227 - +0.3 607,227 - -0.1 607,227 - -2.0 607,227 - -0.8 607,227 - -0.6 607,325 + HGI48_RS02815 0.20 -0.5 607,326 - HGI48_RS02815 0.20 -2.2 607,327 + HGI48_RS02815 0.20 -1.5 607,453 + HGI48_RS02815 0.43 -1.8 607,453 + HGI48_RS02815 0.43 -0.9 607,668 + HGI48_RS02815 0.82 -0.2 607,669 - +2.8 607,681 + HGI48_RS02815 0.85 +0.5 607,681 + HGI48_RS02815 0.85 -1.2 607,682 - HGI48_RS02815 0.85 -1.8 607,682 - HGI48_RS02815 0.85 -1.2 607,682 - HGI48_RS02815 0.85 +0.2 607,699 + HGI48_RS02815 0.88 -0.2 607,699 + HGI48_RS02815 0.88 -1.4 607,699 + HGI48_RS02815 0.88 -2.4 607,784 - -1.3 607,817 - -0.2 607,871 + -2.2 607,871 + -0.8 607,872 - +2.3 607,872 - -0.1 607,954 + HGI48_RS02820 0.14 -1.2 607,954 + HGI48_RS02820 0.14 +0.2 607,954 + HGI48_RS02820 0.14 +0.1 607,954 + HGI48_RS02820 0.14 -1.8 607,954 + HGI48_RS02820 0.14 -2.9 607,954 + HGI48_RS02820 0.14 +0.6 607,955 - HGI48_RS02820 0.14 +1.2 607,955 - HGI48_RS02820 0.14 -0.1 607,955 - +1.5 607,955 - HGI48_RS02820 0.14 +0.9 607,974 + HGI48_RS02820 0.16 -1.1 607,974 + HGI48_RS02820 0.16 +1.3 608,019 + HGI48_RS02820 0.21 -1.5 608,019 + HGI48_RS02820 0.21 -2.5 608,019 + HGI48_RS02820 0.21 +0.1 608,019 + HGI48_RS02820 0.21 +0.8 608,020 - HGI48_RS02820 0.21 -1.5 608,020 - +0.8 608,340 + HGI48_RS02820 0.55 -0.1 608,340 + HGI48_RS02820 0.55 +0.4 608,340 + -0.8 608,340 + HGI48_RS02820 0.55 +0.8 608,341 - HGI48_RS02820 0.55 -2.7 608,341 - HGI48_RS02820 0.55 -0.6 608,341 - HGI48_RS02820 0.55 -0.2 608,385 - HGI48_RS02820 0.59 -1.1 608,395 + HGI48_RS02820 0.60 -1.5 608,402 + HGI48_RS02820 0.61 -1.5 608,403 - HGI48_RS02820 0.61 +0.3 608,425 - HGI48_RS02820 0.63 -0.8 608,466 + HGI48_RS02820 0.68 -0.3 608,467 - HGI48_RS02820 0.68 +0.0 608,492 + HGI48_RS02820 0.70 -1.7 608,492 + HGI48_RS02820 0.70 -2.9 608,492 + HGI48_RS02820 0.70 -1.5 608,492 + +1.2 608,492 + HGI48_RS02820 0.70 +0.2 608,492 + HGI48_RS02820 0.70 -0.2 608,492 + HGI48_RS02820 0.70 +1.3 608,493 - HGI48_RS02820 0.71 +2.9 608,493 - HGI48_RS02820 0.71 -0.5 608,493 - +0.8 608,493 - HGI48_RS02820 0.71 -1.5 608,493 - HGI48_RS02820 0.71 +0.2 608,590 - HGI48_RS02820 0.81 +2.1 608,590 - HGI48_RS02820 0.81 +0.4 608,615 + HGI48_RS02820 0.83 -1.5 608,616 - HGI48_RS02820 0.83 +1.1 608,659 + HGI48_RS02820 0.88 +0.5 608,674 + -0.8 608,675 - HGI48_RS02820 0.90 -0.0 608,675 - HGI48_RS02820 0.90 -0.3 608,675 - HGI48_RS02820 0.90 -0.4 608,758 + +0.2 608,758 + -0.4 608,758 + +0.2 608,758 + -1.6 608,758 + -2.0 608,758 + +1.8 608,759 - +0.3 608,759 - -1.2 608,759 - +0.8 608,759 - -0.3 608,762 + -0.5 608,762 + -0.5 608,762 + -0.8 608,762 + +0.5 608,762 + -1.5 608,762 + -0.7 608,762 + -0.6 608,762 + +0.1 608,762 + +0.6 608,763 - -0.2 608,763 - -1.1 608,763 - -2.0 608,763 - +1.4 608,763 - -0.2 608,763 - +1.0 608,764 + +0.4 608,764 + -3.0 608,764 + -2.4 608,764 + -0.2 608,764 + +0.2 608,764 + +0.6 608,765 - -0.4 608,765 - +1.2 608,765 - +0.4 608,765 - +0.8 608,765 - -0.6 608,765 - -1.2 608,765 - -2.4 608,765 - -0.8 608,765 - +1.1 608,765 - +0.1
Or see this region's nucleotide sequence