Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02115 and HGI48_RS02120 are separated by 2 nucleotides HGI48_RS02120 and HGI48_RS02125 are separated by 12 nucleotides HGI48_RS02125 and HGI48_RS02130 are separated by 91 nucleotides
HGI48_RS02115: HGI48_RS02115 - transketolase, at 463,069 to 463,872
_RS02115
HGI48_RS02120: HGI48_RS02120 - transketolase family protein, at 463,875 to 464,795
_RS02120
HGI48_RS02125: HGI48_RS02125 - D-threitol dehydrogenase, at 464,808 to 465,611
_RS02125
HGI48_RS02130: HGI48_RS02130 - D-ribose ABC transporter substrate-binding protein, at 465,703 to 466,638
_RS02130
Position (kb) 464
465
466 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 463.885 kb on + strand at 463.886 kb on - strand at 463.886 kb on - strand at 464.229 kb on - strand at 464.229 kb on - strand, within HGI48_RS02120 at 464.229 kb on - strand, within HGI48_RS02120 at 464.229 kb on - strand, within HGI48_RS02120 at 464.229 kb on - strand, within HGI48_RS02120 at 464.229 kb on - strand, within HGI48_RS02120 at 464.343 kb on + strand, within HGI48_RS02120 at 464.343 kb on + strand, within HGI48_RS02120 at 464.343 kb on + strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand, within HGI48_RS02120 at 464.344 kb on - strand at 464.572 kb on - strand, within HGI48_RS02120 at 464.596 kb on + strand, within HGI48_RS02120 at 464.597 kb on - strand, within HGI48_RS02120 at 464.597 kb on - strand at 464.597 kb on - strand, within HGI48_RS02120 at 464.597 kb on - strand, within HGI48_RS02120 at 464.640 kb on - strand, within HGI48_RS02120 at 464.640 kb on - strand, within HGI48_RS02120 at 464.694 kb on - strand, within HGI48_RS02120 at 464.827 kb on - strand at 464.827 kb on - strand at 464.827 kb on - strand at 464.834 kb on + strand at 465.324 kb on + strand, within HGI48_RS02125 at 465.325 kb on - strand, within HGI48_RS02125 at 465.325 kb on - strand, within HGI48_RS02125 at 465.404 kb on + strand, within HGI48_RS02125 at 465.687 kb on + strand at 465.688 kb on - strand at 465.726 kb on - strand at 465.726 kb on - strand at 465.726 kb on - strand at 465.817 kb on + strand, within HGI48_RS02130 at 465.817 kb on + strand, within HGI48_RS02130 at 465.820 kb on + strand, within HGI48_RS02130 at 465.821 kb on - strand, within HGI48_RS02130 at 465.821 kb on - strand at 465.821 kb on - strand, within HGI48_RS02130 at 465.821 kb on - strand, within HGI48_RS02130 at 465.821 kb on - strand, within HGI48_RS02130 at 465.821 kb on - strand at 465.821 kb on - strand, within HGI48_RS02130 at 465.947 kb on + strand, within HGI48_RS02130 at 465.947 kb on + strand, within HGI48_RS02130 at 465.947 kb on + strand, within HGI48_RS02130 at 465.948 kb on - strand, within HGI48_RS02130 at 466.079 kb on + strand, within HGI48_RS02130 at 466.080 kb on - strand, within HGI48_RS02130 at 466.080 kb on - strand, within HGI48_RS02130 at 466.153 kb on + strand, within HGI48_RS02130 at 466.153 kb on + strand, within HGI48_RS02130 at 466.153 kb on + strand, within HGI48_RS02130 at 466.153 kb on + strand, within HGI48_RS02130 at 466.154 kb on - strand, within HGI48_RS02130 at 466.311 kb on - strand, within HGI48_RS02130 at 466.311 kb on - strand, within HGI48_RS02130 at 466.311 kb on - strand, within HGI48_RS02130 at 466.528 kb on - strand, within HGI48_RS02130 at 466.528 kb on - strand, within HGI48_RS02130 at 466.528 kb on - strand, within HGI48_RS02130 at 466.528 kb on - strand, within HGI48_RS02130 at 466.528 kb on - strand at 466.528 kb on - strand, within HGI48_RS02130 at 466.528 kb on - strand, within HGI48_RS02130 at 466.528 kb on - strand, within HGI48_RS02130 at 466.528 kb on - strand, within HGI48_RS02130 at 466.531 kb on + strand, within HGI48_RS02130 at 466.531 kb on + strand, within HGI48_RS02130 at 466.531 kb on + strand, within HGI48_RS02130 at 466.531 kb on + strand, within HGI48_RS02130 at 466.531 kb on + strand, within HGI48_RS02130 at 466.532 kb on - strand, within HGI48_RS02130 at 466.532 kb on - strand, within HGI48_RS02130 at 466.532 kb on - strand, within HGI48_RS02130 at 466.532 kb on - strand, within HGI48_RS02130 at 466.532 kb on - strand, within HGI48_RS02130 at 466.532 kb on - strand, within HGI48_RS02130 at 466.532 kb on - strand, within HGI48_RS02130 at 466.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 463,885 + -1.5 463,886 - +1.6 463,886 - +0.1 464,229 - +1.4 464,229 - HGI48_RS02120 0.38 -0.1 464,229 - HGI48_RS02120 0.38 +0.4 464,229 - HGI48_RS02120 0.38 +0.7 464,229 - HGI48_RS02120 0.38 -1.1 464,229 - HGI48_RS02120 0.38 +0.4 464,343 + HGI48_RS02120 0.51 +0.5 464,343 + HGI48_RS02120 0.51 -2.8 464,343 + HGI48_RS02120 0.51 -0.7 464,344 - HGI48_RS02120 0.51 +0.5 464,344 - HGI48_RS02120 0.51 +0.4 464,344 - HGI48_RS02120 0.51 -0.4 464,344 - HGI48_RS02120 0.51 -1.4 464,344 - HGI48_RS02120 0.51 -0.1 464,344 - HGI48_RS02120 0.51 +0.1 464,344 - HGI48_RS02120 0.51 -1.9 464,344 - HGI48_RS02120 0.51 -0.8 464,344 - HGI48_RS02120 0.51 -0.7 464,344 - HGI48_RS02120 0.51 +0.3 464,344 - HGI48_RS02120 0.51 -1.8 464,344 - +1.6 464,572 - HGI48_RS02120 0.76 +1.4 464,596 + HGI48_RS02120 0.78 -1.1 464,597 - HGI48_RS02120 0.78 -0.4 464,597 - +1.6 464,597 - HGI48_RS02120 0.78 -2.3 464,597 - HGI48_RS02120 0.78 -0.5 464,640 - HGI48_RS02120 0.83 +0.4 464,640 - HGI48_RS02120 0.83 -0.1 464,694 - HGI48_RS02120 0.89 -0.7 464,827 - -1.3 464,827 - -0.7 464,827 - -1.1 464,834 + -1.5 465,324 + HGI48_RS02125 0.64 -0.9 465,325 - HGI48_RS02125 0.64 -0.1 465,325 - HGI48_RS02125 0.64 +0.9 465,404 + HGI48_RS02125 0.74 -0.4 465,687 + +1.3 465,688 - +0.5 465,726 - -0.9 465,726 - +1.3 465,726 - +0.9 465,817 + HGI48_RS02130 0.12 -1.1 465,817 + HGI48_RS02130 0.12 -0.7 465,820 + HGI48_RS02130 0.12 -0.9 465,821 - HGI48_RS02130 0.13 +1.0 465,821 - -0.7 465,821 - HGI48_RS02130 0.13 +0.7 465,821 - HGI48_RS02130 0.13 +2.0 465,821 - HGI48_RS02130 0.13 -0.0 465,821 - -0.1 465,821 - HGI48_RS02130 0.13 -1.7 465,947 + HGI48_RS02130 0.26 -2.4 465,947 + HGI48_RS02130 0.26 -0.7 465,947 + HGI48_RS02130 0.26 -0.1 465,948 - HGI48_RS02130 0.26 -0.6 466,079 + HGI48_RS02130 0.40 +1.1 466,080 - HGI48_RS02130 0.40 +1.2 466,080 - HGI48_RS02130 0.40 +0.0 466,153 + HGI48_RS02130 0.48 +0.4 466,153 + HGI48_RS02130 0.48 +0.9 466,153 + HGI48_RS02130 0.48 +0.5 466,153 + HGI48_RS02130 0.48 +0.7 466,154 - HGI48_RS02130 0.48 -0.1 466,311 - HGI48_RS02130 0.65 +1.9 466,311 - HGI48_RS02130 0.65 -0.6 466,311 - HGI48_RS02130 0.65 -0.6 466,528 - HGI48_RS02130 0.88 +0.6 466,528 - HGI48_RS02130 0.88 -0.1 466,528 - HGI48_RS02130 0.88 +0.9 466,528 - HGI48_RS02130 0.88 +1.2 466,528 - +1.4 466,528 - HGI48_RS02130 0.88 -2.0 466,528 - HGI48_RS02130 0.88 -0.4 466,528 - HGI48_RS02130 0.88 -0.3 466,528 - HGI48_RS02130 0.88 -0.5 466,531 + HGI48_RS02130 0.88 +0.3 466,531 + HGI48_RS02130 0.88 +2.8 466,531 + HGI48_RS02130 0.88 +1.1 466,531 + HGI48_RS02130 0.88 -1.2 466,531 + HGI48_RS02130 0.88 +1.4 466,532 - HGI48_RS02130 0.89 -1.1 466,532 - HGI48_RS02130 0.89 -0.5 466,532 - HGI48_RS02130 0.89 +0.9 466,532 - HGI48_RS02130 0.89 -0.3 466,532 - HGI48_RS02130 0.89 -0.0 466,532 - HGI48_RS02130 0.89 -0.1 466,532 - HGI48_RS02130 0.89 +0.1 466,532 - -0.1
Or see this region's nucleotide sequence