Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01370

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01360 and HGI48_RS01365 are separated by 24 nucleotidesHGI48_RS01365 and HGI48_RS01370 overlap by 11 nucleotidesHGI48_RS01370 and HGI48_RS01375 are separated by 109 nucleotides HGI48_RS01360: HGI48_RS01360 - rod shape-determining protein MreD, at 302,509 to 302,997 _RS01360 HGI48_RS01365: HGI48_RS01365 - septum formation inhibitor Maf, at 303,022 to 303,615 _RS01365 HGI48_RS01370: HGI48_RS01370 - ribonuclease G, at 303,605 to 305,074 _RS01370 HGI48_RS01375: HGI48_RS01375 - AsmA2 domain-containing protein YhdP, at 305,184 to 309,020 _RS01375 Position (kb) 303 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 302.996 kb on - strandat 303.009 kb on + strandat 303.034 kb on + strandat 303.034 kb on + strandat 303.034 kb on + strandat 303.034 kb on + strandat 303.035 kb on - strandat 303.151 kb on + strand, within HGI48_RS01365at 303.151 kb on + strand, within HGI48_RS01365at 303.151 kb on + strand, within HGI48_RS01365at 303.151 kb on + strandat 303.151 kb on + strand, within HGI48_RS01365at 303.151 kb on + strand, within HGI48_RS01365at 303.151 kb on + strand, within HGI48_RS01365at 303.152 kb on - strand, within HGI48_RS01365at 303.152 kb on - strand, within HGI48_RS01365at 303.152 kb on - strand, within HGI48_RS01365at 303.294 kb on + strand, within HGI48_RS01365at 303.392 kb on + strand, within HGI48_RS01365at 303.423 kb on + strand, within HGI48_RS01365at 303.423 kb on + strand, within HGI48_RS01365at 303.424 kb on - strand, within HGI48_RS01365at 303.424 kb on - strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strandat 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.430 kb on + strand, within HGI48_RS01365at 303.431 kb on - strand, within HGI48_RS01365at 303.431 kb on - strand, within HGI48_RS01365at 303.431 kb on - strand, within HGI48_RS01365at 303.520 kb on + strand, within HGI48_RS01365at 303.521 kb on - strand, within HGI48_RS01365at 303.521 kb on - strand, within HGI48_RS01365at 303.657 kb on - strandat 303.657 kb on - strandat 303.659 kb on - strandat 303.659 kb on - strandat 303.724 kb on + strandat 303.725 kb on - strandat 303.729 kb on - strandat 303.964 kb on + strand, within HGI48_RS01370at 304.037 kb on - strand, within HGI48_RS01370at 304.037 kb on - strand, within HGI48_RS01370at 304.350 kb on - strand, within HGI48_RS01370at 304.382 kb on + strand, within HGI48_RS01370at 304.383 kb on - strandat 304.412 kb on + strandat 304.413 kb on - strand, within HGI48_RS01370at 304.456 kb on - strand, within HGI48_RS01370at 304.711 kb on + strand, within HGI48_RS01370at 304.711 kb on + strand, within HGI48_RS01370at 304.794 kb on + strandat 304.794 kb on + strand, within HGI48_RS01370at 304.794 kb on + strand, within HGI48_RS01370at 304.795 kb on - strand, within HGI48_RS01370at 304.795 kb on - strand, within HGI48_RS01370at 304.795 kb on - strand, within HGI48_RS01370at 304.868 kb on + strand, within HGI48_RS01370at 304.869 kb on - strand, within HGI48_RS01370at 304.869 kb on - strand, within HGI48_RS01370at 304.907 kb on + strand, within HGI48_RS01370at 304.907 kb on + strandat 304.907 kb on + strand, within HGI48_RS01370at 304.908 kb on - strand, within HGI48_RS01370at 305.028 kb on + strandat 305.029 kb on - strandat 305.039 kb on + strandat 305.040 kb on - strandat 305.072 kb on + strandat 305.072 kb on + strandat 305.072 kb on + strandat 305.072 kb on + strandat 305.072 kb on + strandat 305.072 kb on + strandat 305.073 kb on - strandat 305.073 kb on - strandat 305.073 kb on - strandat 305.073 kb on - strandat 305.121 kb on + strandat 305.203 kb on + strandat 305.204 kb on - strandat 305.204 kb on - strandat 305.233 kb on + strandat 305.233 kb on + strandat 305.285 kb on + strandat 305.285 kb on + strandat 305.405 kb on + strandat 305.405 kb on + strandat 305.441 kb on + strandat 305.512 kb on - strandat 305.512 kb on - strandat 305.524 kb on + strandat 305.524 kb on + strandat 305.525 kb on - strandat 305.525 kb on - strandat 305.525 kb on - strandat 305.907 kb on - strand, within HGI48_RS01375at 305.949 kb on - strand, within HGI48_RS01375at 305.952 kb on + strandat 305.952 kb on + strand, within HGI48_RS01375at 305.952 kb on + strand, within HGI48_RS01375at 305.952 kb on + strand, within HGI48_RS01375at 305.952 kb on + strand, within HGI48_RS01375at 305.953 kb on - strand, within HGI48_RS01375at 305.953 kb on - strand, within HGI48_RS01375at 305.953 kb on - strand, within HGI48_RS01375at 305.953 kb on - strandat 305.953 kb on - strand, within HGI48_RS01375at 305.953 kb on - strand, within HGI48_RS01375

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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302,996 - +0.5
303,009 + -0.1
303,034 + -0.5
303,034 + +0.7
303,034 + -1.1
303,034 + -0.3
303,035 - -0.9
303,151 + HGI48_RS01365 0.22 +0.4
303,151 + HGI48_RS01365 0.22 +0.2
303,151 + HGI48_RS01365 0.22 +0.9
303,151 + -0.1
303,151 + HGI48_RS01365 0.22 -3.0
303,151 + HGI48_RS01365 0.22 +0.6
303,151 + HGI48_RS01365 0.22 +0.9
303,152 - HGI48_RS01365 0.22 +0.6
303,152 - HGI48_RS01365 0.22 -0.7
303,152 - HGI48_RS01365 0.22 -1.1
303,294 + HGI48_RS01365 0.46 +0.7
303,392 + HGI48_RS01365 0.62 -0.3
303,423 + HGI48_RS01365 0.68 -1.3
303,423 + HGI48_RS01365 0.68 -1.7
303,424 - HGI48_RS01365 0.68 +0.5
303,424 - HGI48_RS01365 0.68 -0.7
303,430 + HGI48_RS01365 0.69 -0.1
303,430 + HGI48_RS01365 0.69 -0.0
303,430 + +0.9
303,430 + HGI48_RS01365 0.69 -1.1
303,430 + HGI48_RS01365 0.69 -0.4
303,430 + HGI48_RS01365 0.69 -0.2
303,430 + HGI48_RS01365 0.69 +0.5
303,430 + HGI48_RS01365 0.69 -0.7
303,430 + HGI48_RS01365 0.69 +0.1
303,430 + HGI48_RS01365 0.69 -1.3
303,430 + HGI48_RS01365 0.69 +0.9
303,430 + HGI48_RS01365 0.69 +0.6
303,431 - HGI48_RS01365 0.69 +1.1
303,431 - HGI48_RS01365 0.69 +0.2
303,431 - HGI48_RS01365 0.69 -1.4
303,520 + HGI48_RS01365 0.84 +0.6
303,521 - HGI48_RS01365 0.84 -1.0
303,521 - HGI48_RS01365 0.84 +0.5
303,657 - -1.1
303,657 - -1.4
303,659 - -1.9
303,659 - -2.3
303,724 + -0.1
303,725 - +0.9
303,729 - -0.2
303,964 + HGI48_RS01370 0.24 -0.1
304,037 - HGI48_RS01370 0.29 -1.1
304,037 - HGI48_RS01370 0.29 -0.1
304,350 - HGI48_RS01370 0.51 -1.9
304,382 + HGI48_RS01370 0.53 -0.1
304,383 - +1.5
304,412 + -0.1
304,413 - HGI48_RS01370 0.55 -0.5
304,456 - HGI48_RS01370 0.58 +0.2
304,711 + HGI48_RS01370 0.75 -0.7
304,711 + HGI48_RS01370 0.75 +1.0
304,794 + +1.3
304,794 + HGI48_RS01370 0.81 -1.1
304,794 + HGI48_RS01370 0.81 -1.4
304,795 - HGI48_RS01370 0.81 +0.5
304,795 - HGI48_RS01370 0.81 -0.1
304,795 - HGI48_RS01370 0.81 +0.1
304,868 + HGI48_RS01370 0.86 +0.2
304,869 - HGI48_RS01370 0.86 -0.9
304,869 - HGI48_RS01370 0.86 -1.3
304,907 + HGI48_RS01370 0.89 -2.3
304,907 + +2.5
304,907 + HGI48_RS01370 0.89 -2.1
304,908 - HGI48_RS01370 0.89 -1.2
305,028 + -0.5
305,029 - -0.7
305,039 + +1.1
305,040 - +0.2
305,072 + -0.9
305,072 + +0.9
305,072 + -1.6
305,072 + +0.3
305,072 + -0.6
305,072 + -0.1
305,073 - -0.1
305,073 - -0.1
305,073 - -0.0
305,073 - -0.1
305,121 + -0.4
305,203 + -0.5
305,204 - +0.3
305,204 - +0.9
305,233 + -0.7
305,233 + -1.1
305,285 + +0.6
305,285 + +1.6
305,405 + -0.0
305,405 + -0.7
305,441 + -0.9
305,512 - -0.9
305,512 - +0.2
305,524 + +0.2
305,524 + -1.8
305,525 - -1.6
305,525 - -1.0
305,525 - -0.4
305,907 - HGI48_RS01375 0.19 -1.9
305,949 - HGI48_RS01375 0.20 -0.2
305,952 + -0.1
305,952 + HGI48_RS01375 0.20 +0.5
305,952 + HGI48_RS01375 0.20 -1.9
305,952 + HGI48_RS01375 0.20 -0.3
305,952 + HGI48_RS01375 0.20 -1.4
305,953 - HGI48_RS01375 0.20 -1.1
305,953 - HGI48_RS01375 0.20 +0.6
305,953 - HGI48_RS01375 0.20 -0.1
305,953 - -0.7
305,953 - HGI48_RS01375 0.20 -1.1
305,953 - HGI48_RS01375 0.20 -1.7

Or see this region's nucleotide sequence