Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00170

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00165 and HGI48_RS00170 are separated by 353 nucleotidesHGI48_RS00170 and HGI48_RS00175 are separated by 101 nucleotides HGI48_RS00165: HGI48_RS00165 - valine--pyruvate transaminase, at 42,289 to 43,545 _RS00165 HGI48_RS00170: HGI48_RS00170 - aldose 1-epimerase family protein, at 43,899 to 45,107 _RS00170 HGI48_RS00175: HGI48_RS00175 - glyoxylate/hydroxypyruvate reductase GhrB, at 45,209 to 46,171 _RS00175 Position (kb) 43 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2 3at 43.046 kb on + strandat 43.046 kb on + strand, within HGI48_RS00165at 43.047 kb on - strand, within HGI48_RS00165at 43.211 kb on + strand, within HGI48_RS00165at 43.248 kb on + strand, within HGI48_RS00165at 43.249 kb on - strand, within HGI48_RS00165at 43.337 kb on + strand, within HGI48_RS00165at 43.400 kb on + strand, within HGI48_RS00165at 43.419 kb on + strand, within HGI48_RS00165at 43.497 kb on + strandat 43.545 kb on + strandat 43.545 kb on + strandat 43.546 kb on - strandat 43.546 kb on - strandat 43.574 kb on + strandat 43.575 kb on - strandat 43.667 kb on - strandat 43.674 kb on + strandat 43.674 kb on + strandat 43.675 kb on - strandat 43.740 kb on + strandat 43.743 kb on + strandat 43.799 kb on - strandat 43.848 kb on + strandat 43.856 kb on + strandat 43.856 kb on + strandat 43.918 kb on + strandat 43.919 kb on - strandat 43.922 kb on + strandat 43.923 kb on - strandat 43.923 kb on - strandat 44.212 kb on + strand, within HGI48_RS00170at 44.241 kb on - strand, within HGI48_RS00170at 44.241 kb on - strand, within HGI48_RS00170at 44.349 kb on + strand, within HGI48_RS00170at 44.349 kb on + strand, within HGI48_RS00170at 44.350 kb on - strandat 44.375 kb on + strand, within HGI48_RS00170at 44.421 kb on + strand, within HGI48_RS00170at 44.499 kb on + strand, within HGI48_RS00170at 44.499 kb on + strand, within HGI48_RS00170at 44.499 kb on + strand, within HGI48_RS00170at 44.499 kb on + strand, within HGI48_RS00170at 44.499 kb on + strand, within HGI48_RS00170at 44.500 kb on - strand, within HGI48_RS00170at 44.500 kb on - strand, within HGI48_RS00170at 44.500 kb on - strand, within HGI48_RS00170at 44.500 kb on - strand, within HGI48_RS00170at 44.503 kb on + strand, within HGI48_RS00170at 44.503 kb on + strand, within HGI48_RS00170at 44.503 kb on + strand, within HGI48_RS00170at 44.575 kb on + strand, within HGI48_RS00170at 44.575 kb on + strand, within HGI48_RS00170at 44.575 kb on + strand, within HGI48_RS00170at 44.576 kb on - strand, within HGI48_RS00170at 44.580 kb on + strand, within HGI48_RS00170at 44.581 kb on - strand, within HGI48_RS00170at 44.697 kb on + strand, within HGI48_RS00170at 44.697 kb on + strand, within HGI48_RS00170at 44.697 kb on + strand, within HGI48_RS00170at 44.697 kb on + strand, within HGI48_RS00170at 44.697 kb on + strand, within HGI48_RS00170at 44.698 kb on - strand, within HGI48_RS00170at 44.698 kb on - strand, within HGI48_RS00170at 44.699 kb on + strand, within HGI48_RS00170at 44.699 kb on + strand, within HGI48_RS00170at 44.699 kb on + strand, within HGI48_RS00170at 44.699 kb on + strand, within HGI48_RS00170at 44.699 kb on + strand, within HGI48_RS00170at 44.699 kb on + strand, within HGI48_RS00170at 44.699 kb on + strand, within HGI48_RS00170at 44.700 kb on - strand, within HGI48_RS00170at 44.700 kb on - strand, within HGI48_RS00170at 44.700 kb on - strand, within HGI48_RS00170at 44.700 kb on - strand, within HGI48_RS00170at 44.700 kb on - strand, within HGI48_RS00170at 44.700 kb on - strand, within HGI48_RS00170at 44.700 kb on - strand, within HGI48_RS00170at 44.700 kb on - strand, within HGI48_RS00170at 44.735 kb on + strand, within HGI48_RS00170at 44.736 kb on - strand, within HGI48_RS00170at 44.736 kb on - strand, within HGI48_RS00170at 44.883 kb on + strand, within HGI48_RS00170at 44.883 kb on + strand, within HGI48_RS00170at 44.884 kb on - strand, within HGI48_RS00170at 44.884 kb on - strand, within HGI48_RS00170at 44.913 kb on + strand, within HGI48_RS00170at 44.913 kb on + strand, within HGI48_RS00170at 44.914 kb on - strand, within HGI48_RS00170at 44.978 kb on + strand, within HGI48_RS00170at 44.979 kb on - strand, within HGI48_RS00170at 44.997 kb on + strandat 44.997 kb on + strandat 44.997 kb on + strandat 44.998 kb on - strandat 45.120 kb on + strandat 45.120 kb on + strandat 45.121 kb on - strandat 45.121 kb on - strandat 45.121 kb on - strandat 45.121 kb on - strandat 45.140 kb on + strandat 45.140 kb on + strandat 45.140 kb on + strandat 45.140 kb on + strandat 45.140 kb on + strandat 45.141 kb on - strandat 45.146 kb on + strandat 45.146 kb on + strandat 45.147 kb on - strandat 45.147 kb on - strandat 45.179 kb on - strandat 45.179 kb on - strandat 45.179 kb on - strandat 45.186 kb on - strandat 45.186 kb on - strandat 45.211 kb on - strandat 45.424 kb on + strand, within HGI48_RS00175at 45.425 kb on - strand, within HGI48_RS00175at 45.664 kb on - strand, within HGI48_RS00175at 45.677 kb on - strand, within HGI48_RS00175at 45.737 kb on - strand, within HGI48_RS00175at 45.742 kb on + strandat 45.742 kb on + strand, within HGI48_RS00175at 45.743 kb on - strand, within HGI48_RS00175at 45.743 kb on - strand, within HGI48_RS00175at 45.749 kb on - strand, within HGI48_RS00175at 45.755 kb on + strand, within HGI48_RS00175at 45.755 kb on + strand, within HGI48_RS00175at 45.755 kb on + strand, within HGI48_RS00175at 45.756 kb on - strand, within HGI48_RS00175at 45.756 kb on - strand, within HGI48_RS00175at 45.756 kb on - strand, within HGI48_RS00175at 45.756 kb on - strand, within HGI48_RS00175at 45.756 kb on - strand, within HGI48_RS00175at 45.756 kb on - strand, within HGI48_RS00175at 45.756 kb on - strand, within HGI48_RS00175at 45.764 kb on - strand, within HGI48_RS00175at 45.890 kb on + strand, within HGI48_RS00175at 45.890 kb on + strand, within HGI48_RS00175at 45.890 kb on + strand, within HGI48_RS00175at 45.890 kb on + strandat 45.902 kb on - strand, within HGI48_RS00175at 46.005 kb on + strandat 46.005 kb on + strand, within HGI48_RS00175at 46.005 kb on + strand, within HGI48_RS00175at 46.021 kb on + strand, within HGI48_RS00175at 46.022 kb on - strand, within HGI48_RS00175

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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43,046 + -0.7
43,046 + HGI48_RS00165 0.60 -1.8
43,047 - HGI48_RS00165 0.60 -1.0
43,211 + HGI48_RS00165 0.73 +1.3
43,248 + HGI48_RS00165 0.76 -0.7
43,249 - HGI48_RS00165 0.76 -1.7
43,337 + HGI48_RS00165 0.83 +0.3
43,400 + HGI48_RS00165 0.88 +1.1
43,419 + HGI48_RS00165 0.90 -0.7
43,497 + +0.4
43,545 + -0.9
43,545 + -0.4
43,546 - -1.3
43,546 - +1.0
43,574 + -1.9
43,575 - -1.2
43,667 - +0.3
43,674 + +0.3
43,674 + -1.5
43,675 - -0.5
43,740 + -0.1
43,743 + -0.1
43,799 - -1.7
43,848 + +0.3
43,856 + -1.5
43,856 + -0.4
43,918 + +0.5
43,919 - +0.9
43,922 + +0.2
43,923 - +1.5
43,923 - -0.2
44,212 + HGI48_RS00170 0.26 -0.2
44,241 - HGI48_RS00170 0.28 +1.6
44,241 - HGI48_RS00170 0.28 -0.1
44,349 + HGI48_RS00170 0.37 +0.6
44,349 + HGI48_RS00170 0.37 +0.7
44,350 - -0.7
44,375 + HGI48_RS00170 0.39 +1.4
44,421 + HGI48_RS00170 0.43 +0.6
44,499 + HGI48_RS00170 0.50 -0.5
44,499 + HGI48_RS00170 0.50 +1.1
44,499 + HGI48_RS00170 0.50 -0.1
44,499 + HGI48_RS00170 0.50 -0.1
44,499 + HGI48_RS00170 0.50 -0.3
44,500 - HGI48_RS00170 0.50 -1.1
44,500 - HGI48_RS00170 0.50 +0.9
44,500 - HGI48_RS00170 0.50 -1.1
44,500 - HGI48_RS00170 0.50 -0.1
44,503 + HGI48_RS00170 0.50 -1.0
44,503 + HGI48_RS00170 0.50 -2.1
44,503 + HGI48_RS00170 0.50 -0.1
44,575 + HGI48_RS00170 0.56 +0.3
44,575 + HGI48_RS00170 0.56 -0.5
44,575 + HGI48_RS00170 0.56 -0.3
44,576 - HGI48_RS00170 0.56 -0.4
44,580 + HGI48_RS00170 0.56 -0.6
44,581 - HGI48_RS00170 0.56 +0.7
44,697 + HGI48_RS00170 0.66 +0.1
44,697 + HGI48_RS00170 0.66 +0.1
44,697 + HGI48_RS00170 0.66 -1.2
44,697 + HGI48_RS00170 0.66 -0.9
44,697 + HGI48_RS00170 0.66 -1.2
44,698 - HGI48_RS00170 0.66 +2.2
44,698 - HGI48_RS00170 0.66 +0.3
44,699 + HGI48_RS00170 0.66 +0.3
44,699 + HGI48_RS00170 0.66 -1.2
44,699 + HGI48_RS00170 0.66 +0.5
44,699 + HGI48_RS00170 0.66 -0.9
44,699 + HGI48_RS00170 0.66 +0.6
44,699 + HGI48_RS00170 0.66 -1.3
44,699 + HGI48_RS00170 0.66 +0.7
44,700 - HGI48_RS00170 0.66 -1.4
44,700 - HGI48_RS00170 0.66 -0.3
44,700 - HGI48_RS00170 0.66 +1.5
44,700 - HGI48_RS00170 0.66 +0.1
44,700 - HGI48_RS00170 0.66 +1.5
44,700 - HGI48_RS00170 0.66 -2.1
44,700 - HGI48_RS00170 0.66 +0.7
44,700 - HGI48_RS00170 0.66 -1.1
44,735 + HGI48_RS00170 0.69 -2.4
44,736 - HGI48_RS00170 0.69 +0.6
44,736 - HGI48_RS00170 0.69 -1.1
44,883 + HGI48_RS00170 0.81 -1.7
44,883 + HGI48_RS00170 0.81 -0.3
44,884 - HGI48_RS00170 0.81 +0.5
44,884 - HGI48_RS00170 0.81 -0.3
44,913 + HGI48_RS00170 0.84 -1.4
44,913 + HGI48_RS00170 0.84 -0.2
44,914 - HGI48_RS00170 0.84 -1.7
44,978 + HGI48_RS00170 0.89 +0.6
44,979 - HGI48_RS00170 0.89 +0.6
44,997 + +0.4
44,997 + -0.5
44,997 + -1.4
44,998 - -0.8
45,120 + -0.3
45,120 + -0.8
45,121 - -0.2
45,121 - +0.7
45,121 - -0.5
45,121 - +0.1
45,140 + -0.1
45,140 + -1.7
45,140 + +0.8
45,140 + -0.1
45,140 + -0.1
45,141 - +0.8
45,146 + -0.1
45,146 + -1.1
45,147 - -0.4
45,147 - +2.3
45,179 - -0.1
45,179 - -0.6
45,179 - -0.7
45,186 - -0.6
45,186 - -0.9
45,211 - +0.1
45,424 + HGI48_RS00175 0.22 -0.3
45,425 - HGI48_RS00175 0.22 +0.6
45,664 - HGI48_RS00175 0.47 +0.3
45,677 - HGI48_RS00175 0.49 -0.9
45,737 - HGI48_RS00175 0.55 +0.7
45,742 + +0.3
45,742 + HGI48_RS00175 0.55 -0.4
45,743 - HGI48_RS00175 0.55 +0.9
45,743 - HGI48_RS00175 0.55 -0.1
45,749 - HGI48_RS00175 0.56 -0.7
45,755 + HGI48_RS00175 0.57 -1.7
45,755 + HGI48_RS00175 0.57 -1.1
45,755 + HGI48_RS00175 0.57 -1.9
45,756 - HGI48_RS00175 0.57 -1.0
45,756 - HGI48_RS00175 0.57 -0.9
45,756 - HGI48_RS00175 0.57 -1.4
45,756 - HGI48_RS00175 0.57 +0.1
45,756 - HGI48_RS00175 0.57 -0.6
45,756 - HGI48_RS00175 0.57 +0.6
45,756 - HGI48_RS00175 0.57 +0.3
45,764 - HGI48_RS00175 0.58 -1.8
45,890 + HGI48_RS00175 0.71 +1.1
45,890 + HGI48_RS00175 0.71 +0.3
45,890 + HGI48_RS00175 0.71 -1.2
45,890 + +2.5
45,902 - HGI48_RS00175 0.72 -0.3
46,005 + +2.8
46,005 + HGI48_RS00175 0.83 -1.1
46,005 + HGI48_RS00175 0.83 -1.7
46,021 + HGI48_RS00175 0.84 +0.1
46,022 - HGI48_RS00175 0.84 -0.3

Or see this region's nucleotide sequence