Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00135

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00130 and HGI48_RS00135 are separated by 92 nucleotidesHGI48_RS00135 and HGI48_RS00140 overlap by 4 nucleotides HGI48_RS00130: HGI48_RS00130 - glucokinase, at 33,534 to 34,502 _RS00130 HGI48_RS00135: HGI48_RS00135 - alkylhydroperoxidase domain protein, at 34,595 to 35,713 _RS00135 HGI48_RS00140: HGI48_RS00140 - putative FMN-dependent luciferase-like monooxygenase, at 35,710 to 36,750 _RS00140 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 33.623 kb on + strandat 33.623 kb on + strandat 33.623 kb on + strandat 33.673 kb on + strand, within HGI48_RS00130at 33.674 kb on - strand, within HGI48_RS00130at 33.674 kb on - strand, within HGI48_RS00130at 33.674 kb on - strand, within HGI48_RS00130at 33.716 kb on + strand, within HGI48_RS00130at 33.716 kb on + strand, within HGI48_RS00130at 33.716 kb on + strand, within HGI48_RS00130at 33.716 kb on + strand, within HGI48_RS00130at 33.717 kb on - strand, within HGI48_RS00130at 33.717 kb on - strand, within HGI48_RS00130at 33.717 kb on - strand, within HGI48_RS00130at 33.717 kb on - strand, within HGI48_RS00130at 33.717 kb on - strand, within HGI48_RS00130at 33.933 kb on + strandat 33.933 kb on + strand, within HGI48_RS00130at 34.057 kb on + strand, within HGI48_RS00130at 34.127 kb on + strand, within HGI48_RS00130at 34.127 kb on + strand, within HGI48_RS00130at 34.127 kb on + strand, within HGI48_RS00130at 34.127 kb on + strand, within HGI48_RS00130at 34.127 kb on + strand, within HGI48_RS00130at 34.128 kb on - strand, within HGI48_RS00130at 34.128 kb on - strand, within HGI48_RS00130at 34.311 kb on + strand, within HGI48_RS00130at 34.311 kb on + strand, within HGI48_RS00130at 34.311 kb on + strand, within HGI48_RS00130at 34.311 kb on + strand, within HGI48_RS00130at 34.311 kb on + strandat 34.311 kb on + strand, within HGI48_RS00130at 34.311 kb on + strand, within HGI48_RS00130at 34.311 kb on + strand, within HGI48_RS00130at 34.311 kb on + strand, within HGI48_RS00130at 34.312 kb on - strand, within HGI48_RS00130at 34.312 kb on - strand, within HGI48_RS00130at 34.470 kb on + strandat 34.470 kb on + strandat 34.628 kb on + strandat 34.847 kb on + strand, within HGI48_RS00135at 34.848 kb on - strand, within HGI48_RS00135at 34.848 kb on - strand, within HGI48_RS00135at 34.848 kb on - strandat 34.905 kb on + strand, within HGI48_RS00135at 34.905 kb on + strand, within HGI48_RS00135at 34.905 kb on + strand, within HGI48_RS00135at 34.905 kb on + strand, within HGI48_RS00135at 34.905 kb on + strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.906 kb on - strand, within HGI48_RS00135at 34.909 kb on + strand, within HGI48_RS00135at 34.909 kb on + strand, within HGI48_RS00135at 34.909 kb on + strand, within HGI48_RS00135at 34.910 kb on - strand, within HGI48_RS00135at 34.910 kb on - strand, within HGI48_RS00135at 34.979 kb on - strand, within HGI48_RS00135at 34.979 kb on - strand, within HGI48_RS00135at 34.980 kb on + strand, within HGI48_RS00135at 34.980 kb on + strand, within HGI48_RS00135at 35.049 kb on + strand, within HGI48_RS00135at 35.050 kb on - strand, within HGI48_RS00135at 35.316 kb on - strand, within HGI48_RS00135at 35.487 kb on + strandat 35.487 kb on + strand, within HGI48_RS00135at 35.498 kb on + strand, within HGI48_RS00135at 35.598 kb on + strand, within HGI48_RS00135at 35.598 kb on + strand, within HGI48_RS00135at 35.599 kb on - strand, within HGI48_RS00135at 35.599 kb on - strand, within HGI48_RS00135at 35.599 kb on - strand, within HGI48_RS00135at 35.599 kb on - strandat 35.745 kb on + strandat 35.745 kb on + strandat 35.746 kb on - strandat 35.980 kb on + strand, within HGI48_RS00140at 36.117 kb on - strand, within HGI48_RS00140at 36.117 kb on - strand, within HGI48_RS00140at 36.460 kb on + strand, within HGI48_RS00140at 36.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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33,623 + +0.3
33,623 + +3.2
33,623 + +0.8
33,673 + HGI48_RS00130 0.14 +0.6
33,674 - HGI48_RS00130 0.14 +0.6
33,674 - HGI48_RS00130 0.14 -1.1
33,674 - HGI48_RS00130 0.14 -0.2
33,716 + HGI48_RS00130 0.19 -1.0
33,716 + HGI48_RS00130 0.19 -0.5
33,716 + HGI48_RS00130 0.19 -1.7
33,716 + HGI48_RS00130 0.19 -2.6
33,717 - HGI48_RS00130 0.19 +0.1
33,717 - HGI48_RS00130 0.19 -0.7
33,717 - HGI48_RS00130 0.19 +1.6
33,717 - HGI48_RS00130 0.19 -1.5
33,717 - HGI48_RS00130 0.19 -1.0
33,933 + +0.9
33,933 + HGI48_RS00130 0.41 +0.2
34,057 + HGI48_RS00130 0.54 -1.1
34,127 + HGI48_RS00130 0.61 -0.9
34,127 + HGI48_RS00130 0.61 +0.9
34,127 + HGI48_RS00130 0.61 +0.5
34,127 + HGI48_RS00130 0.61 -0.1
34,127 + HGI48_RS00130 0.61 -2.1
34,128 - HGI48_RS00130 0.61 -1.7
34,128 - HGI48_RS00130 0.61 -0.1
34,311 + HGI48_RS00130 0.80 +0.6
34,311 + HGI48_RS00130 0.80 -0.7
34,311 + HGI48_RS00130 0.80 -1.9
34,311 + HGI48_RS00130 0.80 -0.5
34,311 + -0.7
34,311 + HGI48_RS00130 0.80 +0.1
34,311 + HGI48_RS00130 0.80 +0.2
34,311 + HGI48_RS00130 0.80 +0.9
34,311 + HGI48_RS00130 0.80 +0.1
34,312 - HGI48_RS00130 0.80 -1.1
34,312 - HGI48_RS00130 0.80 -1.4
34,470 + +0.7
34,470 + +0.2
34,628 + +0.7
34,847 + HGI48_RS00135 0.23 -2.9
34,848 - HGI48_RS00135 0.23 -0.4
34,848 - HGI48_RS00135 0.23 -1.1
34,848 - +0.9
34,905 + HGI48_RS00135 0.28 -1.6
34,905 + HGI48_RS00135 0.28 +0.2
34,905 + HGI48_RS00135 0.28 -1.4
34,905 + HGI48_RS00135 0.28 +0.4
34,905 + HGI48_RS00135 0.28 -0.4
34,906 - HGI48_RS00135 0.28 +0.9
34,906 - HGI48_RS00135 0.28 -1.7
34,906 - HGI48_RS00135 0.28 -0.7
34,906 - HGI48_RS00135 0.28 +0.2
34,906 - HGI48_RS00135 0.28 -1.1
34,909 + HGI48_RS00135 0.28 -0.2
34,909 + HGI48_RS00135 0.28 +0.5
34,909 + HGI48_RS00135 0.28 +1.6
34,910 - HGI48_RS00135 0.28 -1.1
34,910 - HGI48_RS00135 0.28 -0.9
34,979 - HGI48_RS00135 0.34 -1.2
34,979 - HGI48_RS00135 0.34 -1.7
34,980 + HGI48_RS00135 0.34 +0.9
34,980 + HGI48_RS00135 0.34 +0.9
35,049 + HGI48_RS00135 0.41 -0.5
35,050 - HGI48_RS00135 0.41 -0.2
35,316 - HGI48_RS00135 0.64 -0.1
35,487 + +1.6
35,487 + HGI48_RS00135 0.80 +0.2
35,498 + HGI48_RS00135 0.81 +0.3
35,598 + HGI48_RS00135 0.90 -0.8
35,598 + HGI48_RS00135 0.90 -0.3
35,599 - HGI48_RS00135 0.90 -1.1
35,599 - HGI48_RS00135 0.90 -1.6
35,599 - HGI48_RS00135 0.90 -1.3
35,599 - -0.7
35,745 + -2.6
35,745 + -1.1
35,746 - -0.6
35,980 + HGI48_RS00140 0.26 +0.9
36,117 - HGI48_RS00140 0.39 +1.2
36,117 - HGI48_RS00140 0.39 +0.3
36,460 + HGI48_RS00140 0.72 +1.2
36,461 - +0.9

Or see this region's nucleotide sequence