Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21570

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,812,463	+				-0.1
4,812,464	-				+0.6
4,812,464	-				+0.7
4,812,464	-				-0.7
4,812,480	+				+0.4
4,812,481	-				+0.9
4,812,481	-				-0.4
4,812,481	-				+1.1
4,812,481	-				-0.1
4,812,500	+				-1.1
4,812,500	+				+2.1
4,812,500	+				-0.7
4,812,500	+				-0.1
4,812,501	-				+1.7
4,812,501	-				-0.0
4,812,501	-				-0.5
4,812,501	-				-0.7
4,812,501	-				-0.1
4,812,501	-				+1.5
4,812,524	+				+0.6
4,812,524	+				-2.3
4,812,524	+				+0.5
4,812,524	+				-0.6
4,812,525	-				-0.1
4,812,525	-				-0.7
4,812,525	-				+0.5
4,812,647	+		HGI48_RS21565	0.15	-0.6
4,812,726	+		HGI48_RS21565	0.23	-1.1
4,812,879	+		HGI48_RS21565	0.39	-1.1
4,812,924	+		HGI48_RS21565	0.44	-0.5
4,812,925	-		HGI48_RS21565	0.44	-1.5
4,812,925	-		HGI48_RS21565	0.44	-1.5
4,813,042	+		HGI48_RS21565	0.56	+2.1
4,813,050	+		HGI48_RS21565	0.57	-0.6
4,813,050	+		HGI48_RS21565	0.57	-0.1
4,813,051	-		HGI48_RS21565	0.57	+1.1
4,813,051	-		HGI48_RS21565	0.57	-1.7
4,813,051	-		HGI48_RS21565	0.57	+1.2
4,813,051	-		HGI48_RS21565	0.57	-0.1
4,813,051	-				+0.9
4,813,051	-				-0.1
4,813,051	-		HGI48_RS21565	0.57	-0.5
4,813,114	-		HGI48_RS21565	0.64	-0.1
4,813,130	+		HGI48_RS21565	0.66	-1.7
4,813,142	+		HGI48_RS21565	0.67	-0.3
4,813,180	+		HGI48_RS21565	0.71	-0.1
4,813,180	+		HGI48_RS21565	0.71	-0.1
4,813,257	+		HGI48_RS21565	0.79	+1.5
4,813,257	+		HGI48_RS21565	0.79	-0.7
4,813,257	+				+1.6
4,813,258	-		HGI48_RS21565	0.79	-0.5
4,813,258	-		HGI48_RS21565	0.79	-0.1
4,813,281	+				-0.7
4,813,281	+		HGI48_RS21565	0.81	-0.1
4,813,281	+				+0.9
4,813,281	+		HGI48_RS21565	0.81	+1.2
4,813,282	-		HGI48_RS21565	0.81	-0.1
4,813,282	-		HGI48_RS21565	0.81	-2.5
4,813,282	-		HGI48_RS21565	0.81	-0.4
4,813,282	-		HGI48_RS21565	0.81	-1.5
4,813,282	-		HGI48_RS21565	0.81	-0.2
4,813,283	+		HGI48_RS21565	0.81	-0.8
4,813,391	+				-0.8
4,813,392	-				-0.1
4,813,392	-				+1.2
4,813,392	-				-1.5
4,813,392	-				-1.3
4,813,605	+		HGI48_RS21570	0.16	-0.3
4,813,605	+		HGI48_RS21570	0.16	+1.0
4,813,606	-		HGI48_RS21570	0.16	+0.3
4,813,636	+		HGI48_RS21570	0.20	-1.6
4,813,636	+		HGI48_RS21570	0.20	+0.1
4,813,636	+		HGI48_RS21570	0.20	-0.0
4,813,636	+		HGI48_RS21570	0.20	+1.3
4,813,637	-		HGI48_RS21570	0.20	-0.4
4,813,637	-		HGI48_RS21570	0.20	-1.7
4,813,637	-		HGI48_RS21570	0.20	-0.6
4,813,779	-		HGI48_RS21570	0.36	-0.0
4,813,829	-		HGI48_RS21570	0.42	-1.6
4,813,881	-		HGI48_RS21570	0.47	+0.1
4,813,881	-		HGI48_RS21570	0.47	+3.7
4,813,882	+		HGI48_RS21570	0.48	-1.8
4,813,882	+		HGI48_RS21570	0.48	-0.1
4,813,882	+		HGI48_RS21570	0.48	-0.8
4,813,883	-		HGI48_RS21570	0.48	+1.4
4,813,883	-		HGI48_RS21570	0.48	+0.2
4,813,883	-		HGI48_RS21570	0.48	-0.6
4,814,021	+		HGI48_RS21570	0.63	+0.5
4,814,032	+		HGI48_RS21570	0.64	-0.7
4,814,149	+		HGI48_RS21570	0.78	+0.5
4,814,149	+		HGI48_RS21570	0.78	-1.9
4,814,149	+		HGI48_RS21570	0.78	-0.5
4,814,150	-		HGI48_RS21570	0.78	-0.9
4,814,150	-		HGI48_RS21570	0.78	+0.4
4,814,150	-		HGI48_RS21570	0.78	+0.4
4,814,345	+				+0.1
4,814,370	-				+0.3
4,814,370	-				+0.2
4,814,382	+				-0.7
4,814,382	+				-1.9
4,814,382	+				+0.4
4,814,382	+				-0.1
4,814,382	+				-0.4
4,814,382	+				-0.5
4,814,382	+				-0.6
4,814,382	+				-2.0
4,814,382	+				-0.6
4,814,382	+				+0.5
4,814,382	+				+0.3
4,814,383	-				-1.9
4,814,383	-				-1.1
4,814,383	-				-0.7
4,814,383	-				-0.4
4,814,383	-				+0.1
4,814,383	-				+0.0
4,814,383	-				+0.9
4,814,383	-				-1.5
4,814,383	-				+0.3
4,814,383	-				-0.1
4,814,383	-				-1.0
4,814,383	-				-0.9
4,814,383	-				+1.4
4,814,384	+				+0.3
4,814,384	+				-1.1
4,814,384	+				-0.3
4,814,385	-				+0.4
4,814,385	-				+0.8
4,814,385	-				+0.5
4,814,385	-				-0.7
4,814,385	-				-0.1
4,814,385	-				-0.5
4,814,385	-				-0.1
4,814,385	-				-0.9
4,814,385	-				-0.5
4,814,385	-				+0.9
4,814,443	+				-0.1
4,814,443	+				-0.7
4,814,444	-				+0.7
4,814,444	-				-0.1
4,814,495	+				+0.4
4,814,495	+				+0.6
4,814,496	-				-1.1
4,814,496	-				-0.5
4,814,496	-				+0.9
4,814,542	+		HGI48_RS21575	0.13	-1.0
4,814,542	+		HGI48_RS21575	0.13	-0.2
4,814,543	-		HGI48_RS21575	0.14	-0.1
4,814,611	+		HGI48_RS21575	0.22	-0.7
4,814,612	-				+2.2
4,814,619	-		HGI48_RS21575	0.23	-1.3
4,814,619	-		HGI48_RS21575	0.23	-0.9
4,814,619	-				+0.9
4,814,619	-		HGI48_RS21575	0.23	-2.6
4,814,619	-		HGI48_RS21575	0.23	+0.3
4,814,628	-		HGI48_RS21575	0.24	+1.2
4,814,718	+		HGI48_RS21575	0.36	-1.7
4,814,718	+		HGI48_RS21575	0.36	+0.1
4,814,719	-		HGI48_RS21575	0.36	-1.5
4,814,762	+		HGI48_RS21575	0.42	+0.1
4,814,763	-		HGI48_RS21575	0.42	+0.1
4,814,763	-		HGI48_RS21575	0.42	-0.1
4,814,770	+		HGI48_RS21575	0.43	-0.6
4,814,771	-		HGI48_RS21575	0.43	-0.1
4,814,771	-		HGI48_RS21575	0.43	-0.1
4,815,047	+				-0.1
4,815,047	+		HGI48_RS21575	0.78	+0.4
4,815,047	+		HGI48_RS21575	0.78	-0.9
4,815,047	+		HGI48_RS21575	0.78	+1.7
4,815,047	+		HGI48_RS21575	0.78	-0.6
4,815,048	-				-0.7
4,815,048	-		HGI48_RS21575	0.79	+0.1
4,815,048	-		HGI48_RS21575	0.79	-1.3
4,815,048	-		HGI48_RS21575	0.79	-0.9
4,815,048	-		HGI48_RS21575	0.79	+0.7
4,815,048	-				+0.9
4,815,049	+		HGI48_RS21575	0.79	-0.4
4,815,050	-		HGI48_RS21575	0.79	-0.5
4,815,050	-		HGI48_RS21575	0.79	-0.2
4,815,050	-		HGI48_RS21575	0.79	-1.1
4,815,070	+		HGI48_RS21575	0.81	-0.5
4,815,070	+		HGI48_RS21575	0.81	-2.1
4,815,070	+		HGI48_RS21575	0.81	+0.9
4,815,071	-		HGI48_RS21575	0.81	-1.7
4,815,112	+		HGI48_RS21575	0.87	-0.1
4,815,112	+				+2.4
4,815,112	+		HGI48_RS21575	0.87	+0.4
4,815,112	+		HGI48_RS21575	0.87	+0.1
4,815,113	-		HGI48_RS21575	0.87	-0.7
4,815,116	+		HGI48_RS21575	0.87	-1.5
4,815,116	+		HGI48_RS21575	0.87	-1.9
4,815,191	+				+0.3
4,815,191	+				+1.4
4,815,191	+				+1.0
4,815,191	+				+0.9
4,815,191	+				+1.0
4,815,191	+				-0.1
4,815,191	+				-0.1
4,815,191	+				+1.2
4,815,191	+				-1.6
4,815,191	+				+1.0
4,815,191	+				-1.5
4,815,191	+				-1.2
4,815,191	+				-0.1
4,815,192	-				-1.1
4,815,217	-				-2.1
4,815,224	+				-1.7
4,815,224	+				-1.1
4,815,224	+				-1.1
4,815,224	+				-0.0
4,815,224	+				+0.3
4,815,224	+				-0.5