Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21375

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,771,446	+				+1.6
4,771,446	+		HGI48_RS21365	0.81	-0.5
4,771,446	+		HGI48_RS21365	0.81	-0.4
4,771,446	+		HGI48_RS21365	0.81	+0.7
4,771,447	-		HGI48_RS21365	0.82	+1.7
4,771,447	-				-0.1
4,771,509	+		HGI48_RS21365	0.86	-1.9
4,771,510	-		HGI48_RS21365	0.86	-0.9
4,771,512	+		HGI48_RS21365	0.86	+0.5
4,771,512	+		HGI48_RS21365	0.86	-0.4
4,771,512	+		HGI48_RS21365	0.86	-0.4
4,771,513	-		HGI48_RS21365	0.86	-0.5
4,771,513	-		HGI48_RS21365	0.86	+1.7
4,771,525	-		HGI48_RS21365	0.87	+0.9
4,771,653	+				+1.4
4,771,653	+				-1.5
4,771,653	+				+1.1
4,771,653	+				-1.1
4,771,653	+				+1.0
4,771,653	+				+0.2
4,771,653	+				+0.3
4,771,654	-				+0.9
4,771,743	+				-0.1
4,771,743	+				-1.3
4,771,744	-				-0.1
4,771,744	-				-3.0
4,771,744	-				-0.0
4,771,744	-				+0.3
4,771,744	-				+2.0
4,771,744	-				+0.6
4,771,747	+				-2.7
4,771,747	+				-0.1
4,771,747	+				-1.5
4,771,747	+				+0.4
4,771,748	-				+0.4
4,771,748	-				-0.2
4,771,748	-				-1.1
4,771,748	-				-0.8
4,771,749	+				+2.2
4,771,750	-				-1.5
4,771,750	-				+0.1
4,771,819	-				-1.4
4,771,869	+				-0.7
4,771,869	+				-1.5
4,771,869	+				+0.5
4,771,869	+				+0.4
4,771,869	+				-0.2
4,771,869	+				-0.1
4,771,869	+				-1.8
4,771,869	+				-0.3
4,771,869	+				+0.2
4,771,870	-				+0.7
4,771,870	-				-1.1
4,771,870	-				-0.6
4,771,870	-				+1.4
4,771,870	-				+0.3
4,771,870	-				-0.2
4,771,870	-				+1.1
4,771,933	-		HGI48_RS21370	0.17	-1.5
4,772,055	+		HGI48_RS21370	0.43	+0.1
4,772,055	+		HGI48_RS21370	0.43	+0.7
4,772,154	+		HGI48_RS21370	0.65	+0.3
4,772,154	+		HGI48_RS21370	0.65	+1.1
4,772,154	+		HGI48_RS21370	0.65	+0.3
4,772,154	+		HGI48_RS21370	0.65	-1.7
4,772,154	+				+0.9
4,772,154	+		HGI48_RS21370	0.65	-0.5
4,772,154	+		HGI48_RS21370	0.65	-1.1
4,772,155	-		HGI48_RS21370	0.65	-0.0
4,772,155	-		HGI48_RS21370	0.65	-0.3
4,772,155	-		HGI48_RS21370	0.65	-1.3
4,772,155	-		HGI48_RS21370	0.65	-0.4
4,772,155	-		HGI48_RS21370	0.65	+1.9
4,772,157	+		HGI48_RS21370	0.65	-0.8
4,772,157	+		HGI48_RS21370	0.65	-0.6
4,772,157	+		HGI48_RS21370	0.65	-0.8
4,772,157	+		HGI48_RS21370	0.65	-0.2
4,772,158	-		HGI48_RS21370	0.65	-2.1
4,772,158	-		HGI48_RS21370	0.65	+2.6
4,772,158	-		HGI48_RS21370	0.65	+0.9
4,772,158	-		HGI48_RS21370	0.65	+0.5
4,772,172	+		HGI48_RS21370	0.68	-0.1
4,772,173	-		HGI48_RS21370	0.69	+1.2
4,772,173	-				-0.7
4,772,173	-		HGI48_RS21370	0.69	-0.5
4,772,224	+		HGI48_RS21370	0.80	-0.1
4,772,224	+		HGI48_RS21370	0.80	+0.2
4,772,224	+		HGI48_RS21370	0.80	-0.5
4,772,224	+		HGI48_RS21370	0.80	-1.9
4,772,224	+		HGI48_RS21370	0.80	+0.5
4,772,224	+		HGI48_RS21370	0.80	+0.4
4,772,224	+				+0.9
4,772,224	+		HGI48_RS21370	0.80	-0.2
4,772,224	+		HGI48_RS21370	0.80	-1.1
4,772,224	+		HGI48_RS21370	0.80	-0.3
4,772,224	+		HGI48_RS21370	0.80	+0.1
4,772,225	-				-0.7
4,772,225	-		HGI48_RS21370	0.80	-0.2
4,772,225	-		HGI48_RS21370	0.80	-2.0
4,772,225	-		HGI48_RS21370	0.80	+0.3
4,772,225	-				+0.3
4,772,225	-		HGI48_RS21370	0.80	-0.4
4,772,225	-		HGI48_RS21370	0.80	-0.6
4,772,225	-				-0.7
4,772,225	-		HGI48_RS21370	0.80	-0.7
4,772,228	+		HGI48_RS21370	0.80	+1.2
4,772,228	+		HGI48_RS21370	0.80	-0.9
4,772,228	+		HGI48_RS21370	0.80	+0.9
4,772,229	-		HGI48_RS21370	0.81	-2.3
4,772,229	-		HGI48_RS21370	0.81	+0.5
4,772,229	-				+0.3
4,772,229	-		HGI48_RS21370	0.81	-0.7
4,772,229	-		HGI48_RS21370	0.81	+0.5
4,772,229	-		HGI48_RS21370	0.81	+0.4
4,772,297	+				+0.6
4,772,298	-				-1.2
4,772,311	+				+1.0
4,772,311	+				-2.6
4,772,311	+				-1.2
4,772,311	+				+0.1
4,772,311	+				-0.7
4,772,312	-				+0.4
4,772,312	-				-0.5
4,772,312	-				+0.6
4,772,327	+				-1.5
4,772,327	+				-0.2
4,772,327	+				+0.1
4,772,328	-				+0.2
4,772,352	-				-1.2
4,772,352	-				-0.3
4,772,352	-				-1.0
4,772,352	-				+0.9
4,772,352	-				-0.4
4,772,352	-				+0.2
4,772,374	+				-0.7
4,772,374	+				-0.6
4,772,374	+				-1.1
4,772,374	+				-0.0
4,772,374	+				+0.3
4,772,374	+				-0.4
4,772,374	+				+0.9
4,772,374	+				+1.2
4,772,374	+				+0.5
4,772,375	-				-0.4
4,772,375	-				-0.2
4,772,375	-				-2.5
4,772,375	-				-1.1
4,772,375	-				-0.1
4,772,375	-				-2.3
4,772,375	-				+0.3
4,772,375	-				-1.7
4,772,375	-				-0.4
4,772,410	-				-0.7
4,772,458	+				+1.9
4,772,458	+		HGI48_RS21375	0.11	-0.9
4,772,459	-		HGI48_RS21375	0.11	-1.6
4,772,617	+		HGI48_RS21375	0.47	+1.0
4,772,618	-		HGI48_RS21375	0.47	-2.1
4,772,732	+		HGI48_RS21375	0.73	-1.5
4,772,732	+		HGI48_RS21375	0.73	-1.3
4,772,733	-		HGI48_RS21375	0.73	+0.9
4,772,733	-				+3.4
4,772,783	+		HGI48_RS21375	0.84	-1.9
4,772,784	-				-0.7
4,772,851	+				+0.4
4,772,873	-				+0.2
4,773,126	+				-0.6
4,773,169	+				-0.4
4,773,169	+				+0.0
4,773,169	+				-0.4
4,773,169	+				+0.2
4,773,169	+				+0.3
4,773,169	+				+0.6
4,773,169	+				+0.8
4,773,173	+				+1.4
4,773,173	+				-0.1
4,773,173	+				-0.7
4,773,173	+				-0.5
4,773,173	+				+2.0
4,773,173	+				-0.4
4,773,173	+				+1.4
4,773,173	+				-0.9
4,773,197	+				-0.3
4,773,197	+				-0.4
4,773,197	+				+1.3
4,773,197	+				-0.2
4,773,297	+				-0.7
4,773,410	+				+1.1