Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS21335 and HGI48_RS21340 are separated by 206 nucleotides HGI48_RS21340 and HGI48_RS21345 are separated by 205 nucleotides HGI48_RS21345 and HGI48_RS21350 overlap by 14 nucleotides
HGI48_RS21335: HGI48_RS21335 - D-ribose pyranase, at 4,763,230 to 4,763,649
_RS21335
HGI48_RS21340: HGI48_RS21340 - YgiW/YdeI family stress tolerance OB fold protein, at 4,763,856 to 4,764,263
_RS21340
HGI48_RS21345: HGI48_RS21345 - response regulator, at 4,764,469 to 4,765,140
_RS21345
HGI48_RS21350: HGI48_RS21350 - two-component system sensor histidine kinase QseC, at 4,765,127 to 4,766,476
_RS21350
Position (kb) 4764
4765
4766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4763.511 kb on + strand, within HGI48_RS21335 at 4763.512 kb on - strand, within HGI48_RS21335 at 4763.589 kb on + strand, within HGI48_RS21335 at 4763.620 kb on - strand at 4763.628 kb on + strand at 4763.629 kb on - strand at 4763.629 kb on - strand at 4763.633 kb on - strand at 4763.657 kb on + strand at 4763.658 kb on - strand at 4763.729 kb on - strand at 4763.729 kb on - strand at 4763.767 kb on - strand at 4763.767 kb on - strand at 4763.769 kb on + strand at 4763.769 kb on + strand at 4763.769 kb on + strand at 4763.770 kb on - strand at 4763.784 kb on - strand at 4763.784 kb on - strand at 4763.788 kb on + strand at 4763.791 kb on + strand at 4763.791 kb on + strand at 4763.791 kb on + strand at 4763.792 kb on - strand at 4763.857 kb on + strand at 4763.857 kb on + strand at 4763.857 kb on + strand at 4763.857 kb on + strand at 4763.857 kb on + strand at 4763.858 kb on - strand at 4763.858 kb on - strand at 4763.858 kb on - strand at 4763.858 kb on - strand at 4763.874 kb on + strand at 4763.903 kb on + strand, within HGI48_RS21340 at 4763.903 kb on + strand, within HGI48_RS21340 at 4763.903 kb on + strand at 4763.903 kb on + strand, within HGI48_RS21340 at 4763.904 kb on - strand, within HGI48_RS21340 at 4763.904 kb on - strand, within HGI48_RS21340 at 4763.935 kb on - strand, within HGI48_RS21340 at 4763.989 kb on - strand, within HGI48_RS21340 at 4764.022 kb on + strand, within HGI48_RS21340 at 4764.022 kb on + strand, within HGI48_RS21340 at 4764.022 kb on + strand, within HGI48_RS21340 at 4764.023 kb on - strand at 4764.051 kb on - strand, within HGI48_RS21340 at 4764.051 kb on - strand, within HGI48_RS21340 at 4764.053 kb on + strand, within HGI48_RS21340 at 4764.053 kb on + strand, within HGI48_RS21340 at 4764.053 kb on + strand, within HGI48_RS21340 at 4764.053 kb on + strand, within HGI48_RS21340 at 4764.053 kb on + strand, within HGI48_RS21340 at 4764.053 kb on + strand, within HGI48_RS21340 at 4764.054 kb on - strand, within HGI48_RS21340 at 4764.054 kb on - strand, within HGI48_RS21340 at 4764.054 kb on - strand, within HGI48_RS21340 at 4764.054 kb on - strand, within HGI48_RS21340 at 4764.087 kb on - strand, within HGI48_RS21340 at 4764.143 kb on + strand, within HGI48_RS21340 at 4764.208 kb on + strand, within HGI48_RS21340 at 4764.208 kb on + strand at 4764.208 kb on + strand, within HGI48_RS21340 at 4764.208 kb on + strand, within HGI48_RS21340 at 4764.226 kb on - strand at 4764.246 kb on + strand at 4764.247 kb on - strand at 4764.247 kb on - strand at 4764.247 kb on - strand at 4764.247 kb on - strand at 4764.281 kb on + strand at 4764.281 kb on + strand at 4764.281 kb on + strand at 4764.281 kb on + strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.282 kb on - strand at 4764.316 kb on - strand at 4764.318 kb on + strand at 4764.345 kb on + strand at 4764.345 kb on + strand at 4764.345 kb on + strand at 4764.345 kb on + strand at 4764.345 kb on + strand at 4764.346 kb on - strand at 4764.368 kb on + strand at 4764.368 kb on + strand at 4764.369 kb on - strand at 4764.369 kb on - strand at 4764.372 kb on + strand at 4764.414 kb on + strand at 4764.415 kb on - strand at 4764.415 kb on - strand at 4764.433 kb on + strand at 4764.433 kb on + strand at 4764.433 kb on + strand at 4764.438 kb on + strand at 4764.438 kb on + strand at 4764.438 kb on + strand at 4764.438 kb on + strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.439 kb on - strand at 4764.440 kb on + strand at 4764.476 kb on + strand at 4764.476 kb on + strand at 4764.477 kb on - strand at 4764.477 kb on - strand at 4764.477 kb on - strand at 4764.477 kb on - strand at 4764.477 kb on - strand at 4764.477 kb on - strand at 4764.477 kb on - strand at 4764.543 kb on + strand, within HGI48_RS21345 at 4764.602 kb on - strand, within HGI48_RS21345 at 4764.602 kb on - strand, within HGI48_RS21345 at 4764.602 kb on - strand, within HGI48_RS21345 at 4764.602 kb on - strand, within HGI48_RS21345 at 4764.686 kb on + strand, within HGI48_RS21345 at 4764.699 kb on - strand at 4764.760 kb on + strand at 4764.760 kb on + strand, within HGI48_RS21345 at 4764.760 kb on + strand, within HGI48_RS21345 at 4764.760 kb on + strand, within HGI48_RS21345 at 4764.760 kb on + strand, within HGI48_RS21345 at 4764.761 kb on - strand, within HGI48_RS21345 at 4764.761 kb on - strand, within HGI48_RS21345 at 4764.761 kb on - strand, within HGI48_RS21345 at 4764.761 kb on - strand, within HGI48_RS21345 at 4764.761 kb on - strand, within HGI48_RS21345 at 4764.827 kb on - strand, within HGI48_RS21345 at 4764.836 kb on + strand, within HGI48_RS21345 at 4764.837 kb on - strand, within HGI48_RS21345 at 4764.837 kb on - strand, within HGI48_RS21345 at 4764.837 kb on - strand, within HGI48_RS21345 at 4764.969 kb on + strand, within HGI48_RS21345 at 4765.003 kb on + strand, within HGI48_RS21345 at 4765.003 kb on + strand, within HGI48_RS21345 at 4765.004 kb on - strand, within HGI48_RS21345 at 4765.004 kb on - strand, within HGI48_RS21345 at 4765.037 kb on + strand, within HGI48_RS21345 at 4765.037 kb on + strand, within HGI48_RS21345 at 4765.037 kb on + strand, within HGI48_RS21345 at 4765.038 kb on - strand at 4765.047 kb on + strand, within HGI48_RS21345 at 4765.089 kb on + strand at 4765.090 kb on - strand at 4765.090 kb on - strand at 4765.090 kb on - strand at 4765.138 kb on + strand at 4765.138 kb on + strand at 4765.139 kb on - strand at 4765.139 kb on - strand at 4765.139 kb on - strand at 4765.139 kb on - strand at 4765.139 kb on - strand at 4765.139 kb on - strand at 4765.139 kb on - strand at 4765.169 kb on - strand at 4765.169 kb on - strand at 4765.207 kb on - strand at 4765.207 kb on - strand at 4765.207 kb on - strand at 4765.231 kb on + strand at 4765.232 kb on - strand at 4765.286 kb on - strand, within HGI48_RS21350 at 4765.450 kb on + strand, within HGI48_RS21350 at 4765.450 kb on + strand, within HGI48_RS21350 at 4765.451 kb on - strand, within HGI48_RS21350 at 4765.540 kb on + strand, within HGI48_RS21350 at 4765.540 kb on + strand, within HGI48_RS21350 at 4765.541 kb on - strand, within HGI48_RS21350 at 4765.548 kb on - strand, within HGI48_RS21350 at 4765.548 kb on - strand at 4765.548 kb on - strand, within HGI48_RS21350 at 4765.548 kb on - strand, within HGI48_RS21350 at 4765.548 kb on - strand at 4765.577 kb on + strand, within HGI48_RS21350 at 4765.588 kb on + strand, within HGI48_RS21350 at 4765.589 kb on - strand, within HGI48_RS21350 at 4765.676 kb on + strand, within HGI48_RS21350 at 4765.676 kb on + strand, within HGI48_RS21350 at 4765.724 kb on - strand, within HGI48_RS21350 at 4765.752 kb on + strand, within HGI48_RS21350 at 4765.752 kb on + strand, within HGI48_RS21350 at 4765.753 kb on - strand, within HGI48_RS21350 at 4765.753 kb on - strand, within HGI48_RS21350 at 4765.753 kb on - strand, within HGI48_RS21350 at 4765.869 kb on + strand, within HGI48_RS21350 at 4765.870 kb on - strand, within HGI48_RS21350 at 4765.870 kb on - strand, within HGI48_RS21350 at 4765.870 kb on - strand, within HGI48_RS21350 at 4765.870 kb on - strand, within HGI48_RS21350 at 4765.891 kb on - strand, within HGI48_RS21350 at 4765.931 kb on - strand, within HGI48_RS21350 at 4765.931 kb on - strand, within HGI48_RS21350 at 4765.939 kb on - strand, within HGI48_RS21350 at 4766.124 kb on + strand, within HGI48_RS21350
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,763,511 + HGI48_RS21335 0.67 -0.4 4,763,512 - HGI48_RS21335 0.67 +1.9 4,763,589 + HGI48_RS21335 0.85 -1.4 4,763,620 - +0.3 4,763,628 + +0.3 4,763,629 - -0.1 4,763,629 - +0.1 4,763,633 - -0.5 4,763,657 + +0.9 4,763,658 - -0.6 4,763,729 - -0.7 4,763,729 - +1.9 4,763,767 - +1.2 4,763,767 - +0.4 4,763,769 + -0.3 4,763,769 + +0.2 4,763,769 + +2.2 4,763,770 - -0.9 4,763,784 - +0.4 4,763,784 - -1.5 4,763,788 + +1.7 4,763,791 + +0.9 4,763,791 + -0.5 4,763,791 + +0.9 4,763,792 - +1.9 4,763,857 + -1.4 4,763,857 + -0.2 4,763,857 + -0.1 4,763,857 + +1.9 4,763,857 + -0.4 4,763,858 - +0.9 4,763,858 - +1.0 4,763,858 - -1.5 4,763,858 - +0.2 4,763,874 + +1.3 4,763,903 + HGI48_RS21340 0.12 -0.1 4,763,903 + HGI48_RS21340 0.12 +1.4 4,763,903 + -0.1 4,763,903 + HGI48_RS21340 0.12 +0.2 4,763,904 - HGI48_RS21340 0.12 -0.2 4,763,904 - HGI48_RS21340 0.12 -1.5 4,763,935 - HGI48_RS21340 0.19 +1.5 4,763,989 - HGI48_RS21340 0.33 +0.4 4,764,022 + HGI48_RS21340 0.41 +1.2 4,764,022 + HGI48_RS21340 0.41 +1.7 4,764,022 + HGI48_RS21340 0.41 +0.4 4,764,023 - -0.1 4,764,051 - HGI48_RS21340 0.48 -0.3 4,764,051 - HGI48_RS21340 0.48 -1.3 4,764,053 + HGI48_RS21340 0.48 -1.1 4,764,053 + HGI48_RS21340 0.48 +1.4 4,764,053 + HGI48_RS21340 0.48 +0.3 4,764,053 + HGI48_RS21340 0.48 -0.3 4,764,053 + HGI48_RS21340 0.48 +2.5 4,764,053 + HGI48_RS21340 0.48 +0.2 4,764,054 - HGI48_RS21340 0.49 -1.5 4,764,054 - HGI48_RS21340 0.49 +3.2 4,764,054 - HGI48_RS21340 0.49 -1.1 4,764,054 - HGI48_RS21340 0.49 -1.5 4,764,087 - HGI48_RS21340 0.57 +0.9 4,764,143 + HGI48_RS21340 0.70 +0.9 4,764,208 + HGI48_RS21340 0.86 +0.3 4,764,208 + -0.1 4,764,208 + HGI48_RS21340 0.86 -0.9 4,764,208 + HGI48_RS21340 0.86 -1.9 4,764,226 - +0.9 4,764,246 + +0.1 4,764,247 - -0.4 4,764,247 - -0.5 4,764,247 - -2.1 4,764,247 - +0.3 4,764,281 + +0.3 4,764,281 + -0.5 4,764,281 + +0.1 4,764,281 + +0.4 4,764,282 - +1.3 4,764,282 - -0.4 4,764,282 - -1.1 4,764,282 - -1.3 4,764,282 - -1.9 4,764,282 - +0.4 4,764,282 - -0.5 4,764,282 - -0.7 4,764,282 - -1.5 4,764,282 - -1.5 4,764,282 - -2.1 4,764,316 - +1.1 4,764,318 + -0.1 4,764,345 + +1.4 4,764,345 + +1.4 4,764,345 + +1.7 4,764,345 + -0.3 4,764,345 + -0.1 4,764,346 - -0.1 4,764,368 + +0.4 4,764,368 + +0.5 4,764,369 - -0.3 4,764,369 - -1.5 4,764,372 + -1.1 4,764,414 + +0.3 4,764,415 - +0.9 4,764,415 - -1.3 4,764,433 + +1.2 4,764,433 + +0.6 4,764,433 + +0.1 4,764,438 + +0.5 4,764,438 + +0.5 4,764,438 + -0.7 4,764,438 + +1.4 4,764,439 - -1.3 4,764,439 - +0.4 4,764,439 - +0.3 4,764,439 - +0.1 4,764,439 - -1.7 4,764,439 - -0.5 4,764,439 - +0.6 4,764,439 - -0.3 4,764,439 - -0.7 4,764,439 - +0.5 4,764,439 - +0.9 4,764,439 - +0.4 4,764,439 - +0.1 4,764,440 + -0.9 4,764,476 + -2.1 4,764,476 + +0.1 4,764,477 - +1.1 4,764,477 - -2.6 4,764,477 - +0.2 4,764,477 - -0.5 4,764,477 - -0.9 4,764,477 - -1.9 4,764,477 - +0.1 4,764,543 + HGI48_RS21345 0.11 +0.6 4,764,602 - HGI48_RS21345 0.20 +0.1 4,764,602 - HGI48_RS21345 0.20 +0.6 4,764,602 - HGI48_RS21345 0.20 +0.4 4,764,602 - HGI48_RS21345 0.20 +1.4 4,764,686 + HGI48_RS21345 0.32 -0.6 4,764,699 - +1.3 4,764,760 + +0.3 4,764,760 + HGI48_RS21345 0.43 +0.5 4,764,760 + HGI48_RS21345 0.43 -2.1 4,764,760 + HGI48_RS21345 0.43 +1.1 4,764,760 + HGI48_RS21345 0.43 -0.3 4,764,761 - HGI48_RS21345 0.43 +0.4 4,764,761 - HGI48_RS21345 0.43 +1.2 4,764,761 - HGI48_RS21345 0.43 -0.1 4,764,761 - HGI48_RS21345 0.43 -1.3 4,764,761 - HGI48_RS21345 0.43 +0.4 4,764,827 - HGI48_RS21345 0.53 +0.3 4,764,836 + HGI48_RS21345 0.55 -0.9 4,764,837 - HGI48_RS21345 0.55 -0.1 4,764,837 - HGI48_RS21345 0.55 -1.1 4,764,837 - HGI48_RS21345 0.55 +0.5 4,764,969 + HGI48_RS21345 0.74 +0.9 4,765,003 + HGI48_RS21345 0.79 +0.8 4,765,003 + HGI48_RS21345 0.79 +0.1 4,765,004 - HGI48_RS21345 0.80 +1.0 4,765,004 - HGI48_RS21345 0.80 -1.5 4,765,037 + HGI48_RS21345 0.85 +1.9 4,765,037 + HGI48_RS21345 0.85 +0.4 4,765,037 + HGI48_RS21345 0.85 -1.3 4,765,038 - +0.9 4,765,047 + HGI48_RS21345 0.86 -1.5 4,765,089 + +0.1 4,765,090 - +0.2 4,765,090 - -0.5 4,765,090 - -1.4 4,765,138 + -0.2 4,765,138 + -1.2 4,765,139 - -1.1 4,765,139 - -0.9 4,765,139 - +1.2 4,765,139 - +0.7 4,765,139 - +0.4 4,765,139 - -0.4 4,765,139 - +0.1 4,765,169 - -0.7 4,765,169 - -0.7 4,765,207 - +0.1 4,765,207 - +0.0 4,765,207 - -1.5 4,765,231 + +0.9 4,765,232 - +0.9 4,765,286 - HGI48_RS21350 0.12 +0.1 4,765,450 + HGI48_RS21350 0.24 +0.1 4,765,450 + HGI48_RS21350 0.24 -1.0 4,765,451 - HGI48_RS21350 0.24 -0.9 4,765,540 + HGI48_RS21350 0.31 -0.2 4,765,540 + HGI48_RS21350 0.31 -0.1 4,765,541 - HGI48_RS21350 0.31 -0.5 4,765,548 - HGI48_RS21350 0.31 +0.4 4,765,548 - -0.1 4,765,548 - HGI48_RS21350 0.31 -0.9 4,765,548 - HGI48_RS21350 0.31 -0.3 4,765,548 - -0.1 4,765,577 + HGI48_RS21350 0.33 +0.9 4,765,588 + HGI48_RS21350 0.34 +0.3 4,765,589 - HGI48_RS21350 0.34 -0.7 4,765,676 + HGI48_RS21350 0.41 +0.9 4,765,676 + HGI48_RS21350 0.41 +1.7 4,765,724 - HGI48_RS21350 0.44 -2.5 4,765,752 + HGI48_RS21350 0.46 -0.3 4,765,752 + HGI48_RS21350 0.46 +0.1 4,765,753 - HGI48_RS21350 0.46 -0.5 4,765,753 - HGI48_RS21350 0.46 +0.4 4,765,753 - HGI48_RS21350 0.46 +0.2 4,765,869 + HGI48_RS21350 0.55 -0.9 4,765,870 - HGI48_RS21350 0.55 -3.3 4,765,870 - HGI48_RS21350 0.55 -0.9 4,765,870 - HGI48_RS21350 0.55 +0.3 4,765,870 - HGI48_RS21350 0.55 -0.7 4,765,891 - HGI48_RS21350 0.57 -1.7 4,765,931 - HGI48_RS21350 0.60 -1.5 4,765,931 - HGI48_RS21350 0.60 -1.1 4,765,939 - HGI48_RS21350 0.60 -0.9 4,766,124 + HGI48_RS21350 0.74 -0.8
Or see this region's nucleotide sequence