Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21320

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,758,918	+		HGI48_RS21315	0.11	+1.2
4,758,919	-		HGI48_RS21315	0.11	+1.0
4,758,919	-		HGI48_RS21315	0.11	-0.7
4,758,978	+		HGI48_RS21315	0.18	-0.6
4,758,996	+		HGI48_RS21315	0.20	+0.9
4,759,026	+		HGI48_RS21315	0.23	-0.4
4,759,026	+		HGI48_RS21315	0.23	+0.1
4,759,026	+		HGI48_RS21315	0.23	-0.1
4,759,026	+		HGI48_RS21315	0.23	+0.7
4,759,026	+		HGI48_RS21315	0.23	+0.9
4,759,026	+		HGI48_RS21315	0.23	+0.5
4,759,026	+		HGI48_RS21315	0.23	+0.4
4,759,026	+		HGI48_RS21315	0.23	+0.6
4,759,026	+		HGI48_RS21315	0.23	-0.1
4,759,026	+		HGI48_RS21315	0.23	+0.7
4,759,026	+		HGI48_RS21315	0.23	+0.1
4,759,026	+		HGI48_RS21315	0.23	+0.7
4,759,026	+		HGI48_RS21315	0.23	+1.3
4,759,026	+		HGI48_RS21315	0.23	-1.1
4,759,026	+		HGI48_RS21315	0.23	-2.6
4,759,026	+		HGI48_RS21315	0.23	+0.9
4,759,026	+		HGI48_RS21315	0.23	+1.2
4,759,026	+		HGI48_RS21315	0.23	-0.4
4,759,026	+		HGI48_RS21315	0.23	-2.1
4,759,026	+		HGI48_RS21315	0.23	+0.3
4,759,026	+		HGI48_RS21315	0.23	-1.5
4,759,026	+		HGI48_RS21315	0.23	+0.6
4,759,026	+		HGI48_RS21315	0.23	+0.9
4,759,026	+		HGI48_RS21315	0.23	-0.5
4,759,026	+		HGI48_RS21315	0.23	+2.6
4,759,026	+		HGI48_RS21315	0.23	+0.4
4,759,026	+		HGI48_RS21315	0.23	+1.5
4,759,026	+		HGI48_RS21315	0.23	+1.2
4,759,026	+		HGI48_RS21315	0.23	+0.9
4,759,026	+		HGI48_RS21315	0.23	+1.9
4,759,026	+		HGI48_RS21315	0.23	-0.1
4,759,026	+		HGI48_RS21315	0.23	-1.3
4,759,026	+				-0.7
4,759,026	+		HGI48_RS21315	0.23	+0.4
4,759,026	+		HGI48_RS21315	0.23	+1.3
4,759,026	+		HGI48_RS21315	0.23	-0.1
4,759,026	+		HGI48_RS21315	0.23	+0.2
4,759,026	+		HGI48_RS21315	0.23	-0.7
4,759,027	-		HGI48_RS21315	0.23	+1.6
4,759,027	-		HGI48_RS21315	0.23	+0.2
4,759,027	-		HGI48_RS21315	0.23	+0.5
4,759,027	-		HGI48_RS21315	0.23	-0.9
4,759,027	-				+0.9
4,759,027	-		HGI48_RS21315	0.23	+0.4
4,759,027	-		HGI48_RS21315	0.23	+0.1
4,759,027	-		HGI48_RS21315	0.23	-0.1
4,759,027	-		HGI48_RS21315	0.23	+2.1
4,759,027	-		HGI48_RS21315	0.23	+0.7
4,759,027	-		HGI48_RS21315	0.23	+2.3
4,759,027	-		HGI48_RS21315	0.23	+0.3
4,759,027	-		HGI48_RS21315	0.23	-1.3
4,759,027	-		HGI48_RS21315	0.23	+0.6
4,759,027	-		HGI48_RS21315	0.23	+1.9
4,759,027	-		HGI48_RS21315	0.23	+1.4
4,759,027	-		HGI48_RS21315	0.23	-0.9
4,759,027	-		HGI48_RS21315	0.23	-0.1
4,759,027	-		HGI48_RS21315	0.23	+1.0
4,759,027	-		HGI48_RS21315	0.23	+0.4
4,759,072	+		HGI48_RS21315	0.28	+2.8
4,759,072	+		HGI48_RS21315	0.28	+0.4
4,759,072	+		HGI48_RS21315	0.28	+1.7
4,759,077	+		HGI48_RS21315	0.28	+0.7
4,759,077	+		HGI48_RS21315	0.28	+1.2
4,759,077	+		HGI48_RS21315	0.28	+0.6
4,759,077	+		HGI48_RS21315	0.28	+1.9
4,759,077	+		HGI48_RS21315	0.28	+2.9
4,759,077	+		HGI48_RS21315	0.28	+1.5
4,759,077	+		HGI48_RS21315	0.28	+0.4
4,759,077	+		HGI48_RS21315	0.28	+1.1
4,759,077	+		HGI48_RS21315	0.28	-1.0
4,759,078	-				+1.9
4,759,078	-		HGI48_RS21315	0.28	-0.4
4,759,078	-		HGI48_RS21315	0.28	+1.9
4,759,078	-		HGI48_RS21315	0.28	-0.2
4,759,078	-		HGI48_RS21315	0.28	+0.4
4,759,078	-		HGI48_RS21315	0.28	+0.1
4,759,078	-		HGI48_RS21315	0.28	-0.3
4,759,078	-		HGI48_RS21315	0.28	+0.1
4,759,078	-		HGI48_RS21315	0.28	-0.5
4,759,078	-		HGI48_RS21315	0.28	-0.7
4,759,078	-		HGI48_RS21315	0.28	-0.9
4,759,078	-		HGI48_RS21315	0.28	+1.4
4,759,078	-		HGI48_RS21315	0.28	-0.6
4,759,078	-		HGI48_RS21315	0.28	+0.4
4,759,095	+		HGI48_RS21315	0.30	-0.3
4,759,095	+		HGI48_RS21315	0.30	+0.1
4,759,095	+		HGI48_RS21315	0.30	+0.3
4,759,095	+		HGI48_RS21315	0.30	-0.1
4,759,095	+		HGI48_RS21315	0.30	-0.1
4,759,095	+		HGI48_RS21315	0.30	+0.4
4,759,095	+		HGI48_RS21315	0.30	+1.3
4,759,095	+		HGI48_RS21315	0.30	+0.9
4,759,096	-		HGI48_RS21315	0.30	-0.1
4,759,096	-		HGI48_RS21315	0.30	-1.5
4,759,096	-		HGI48_RS21315	0.30	+0.0
4,759,096	-		HGI48_RS21315	0.30	+0.4
4,759,096	-		HGI48_RS21315	0.30	+0.0
4,759,096	-		HGI48_RS21315	0.30	+0.5
4,759,101	+		HGI48_RS21315	0.31	+0.9
4,759,101	+				+1.6
4,759,102	-		HGI48_RS21315	0.31	+0.9
4,759,102	-		HGI48_RS21315	0.31	-1.7
4,759,269	+		HGI48_RS21315	0.49	+1.1
4,759,269	+				+0.9
4,759,269	+		HGI48_RS21315	0.49	-1.1
4,759,270	-		HGI48_RS21315	0.49	+0.4
4,759,270	-		HGI48_RS21315	0.49	+0.2
4,759,272	+		HGI48_RS21315	0.49	+0.5
4,759,272	+		HGI48_RS21315	0.49	-1.3
4,759,272	+		HGI48_RS21315	0.49	+0.3
4,759,272	+		HGI48_RS21315	0.49	+1.1
4,759,273	-		HGI48_RS21315	0.50	-0.7
4,759,273	-		HGI48_RS21315	0.50	+0.3
4,759,273	-		HGI48_RS21315	0.50	-1.1
4,759,273	-		HGI48_RS21315	0.50	+0.9
4,759,273	-		HGI48_RS21315	0.50	-1.5
4,759,273	-		HGI48_RS21315	0.50	+1.0
4,759,273	-		HGI48_RS21315	0.50	+0.2
4,759,273	-		HGI48_RS21315	0.50	+0.1
4,759,273	-		HGI48_RS21315	0.50	-1.1
4,759,347	+		HGI48_RS21315	0.57	+1.2
4,759,347	+		HGI48_RS21315	0.57	-0.6
4,759,347	+		HGI48_RS21315	0.57	+0.8
4,759,347	+		HGI48_RS21315	0.57	+1.0
4,759,348	-		HGI48_RS21315	0.58	-1.0
4,759,362	-		HGI48_RS21315	0.59	+0.8
4,759,373	+		HGI48_RS21315	0.60	+0.0
4,759,373	+				+3.4
4,759,373	+		HGI48_RS21315	0.60	+1.1
4,759,374	-		HGI48_RS21315	0.60	+0.4
4,759,374	-		HGI48_RS21315	0.60	-1.1
4,759,410	+		HGI48_RS21315	0.64	+0.1
4,759,410	+		HGI48_RS21315	0.64	+0.4
4,759,410	+		HGI48_RS21315	0.64	+1.6
4,759,410	+		HGI48_RS21315	0.64	+1.9
4,759,410	+		HGI48_RS21315	0.64	+0.4
4,759,461	+		HGI48_RS21315	0.70	-1.7
4,759,527	+		HGI48_RS21315	0.77	+0.2
4,759,527	+		HGI48_RS21315	0.77	+0.3
4,759,527	+		HGI48_RS21315	0.77	+1.5
4,759,528	-		HGI48_RS21315	0.77	+1.1
4,759,528	-		HGI48_RS21315	0.77	-0.1
4,759,563	+		HGI48_RS21315	0.81	-1.7
4,759,563	+		HGI48_RS21315	0.81	+0.6
4,759,564	-		HGI48_RS21315	0.81	-0.5
4,759,564	-		HGI48_RS21315	0.81	+0.2
4,759,564	-		HGI48_RS21315	0.81	-1.0
4,759,564	-		HGI48_RS21315	0.81	+0.5
4,759,564	-				+1.3
4,759,637	+				+0.9
4,759,637	+		HGI48_RS21315	0.89	+1.6
4,759,637	+		HGI48_RS21315	0.89	+0.2
4,759,637	+		HGI48_RS21315	0.89	+0.3
4,759,637	+		HGI48_RS21315	0.89	+0.9
4,759,637	+		HGI48_RS21315	0.89	-1.5
4,759,637	+		HGI48_RS21315	0.89	+0.6
4,759,637	+		HGI48_RS21315	0.89	+1.5
4,759,637	+		HGI48_RS21315	0.89	+1.3
4,759,637	+		HGI48_RS21315	0.89	-0.5
4,759,637	+		HGI48_RS21315	0.89	+1.1
4,759,637	+		HGI48_RS21315	0.89	-1.6
4,759,638	-		HGI48_RS21315	0.89	-0.9
4,759,638	-		HGI48_RS21315	0.89	+2.3
4,759,638	-		HGI48_RS21315	0.89	+0.1
4,759,638	-		HGI48_RS21315	0.89	-0.4
4,759,638	-		HGI48_RS21315	0.89	+0.4
4,759,638	-		HGI48_RS21315	0.89	+0.9
4,759,638	-		HGI48_RS21315	0.89	+0.0
4,759,638	-				+1.3
4,759,638	-		HGI48_RS21315	0.89	+1.6
4,759,639	-		HGI48_RS21315	0.89	+0.0
4,759,688	-				+1.0
4,759,692	+				+1.0
4,759,692	+				+1.3
4,759,692	+				+0.1
4,759,692	+				+0.9
4,759,692	+				-0.3
4,759,692	+				+0.7
4,759,692	+				+0.7
4,759,692	+				+0.3
4,759,692	+				+0.7
4,759,692	+				+0.9
4,759,692	+				+1.2
4,759,693	-				-0.1
4,759,693	-				-0.2
4,759,693	-				+0.9
4,759,693	-				+3.2
4,759,693	-				-0.1
4,759,693	-				+0.2
4,759,693	-				+0.9
4,759,693	-				-1.0
4,759,693	-				-1.8
4,759,693	-				-0.1
4,759,693	-				+0.1
4,759,704	+				+0.4
4,759,704	+				+0.0
4,759,704	+				+0.5
4,759,705	-				-1.0
4,759,705	-				-0.5
4,759,705	-				-2.0
4,759,705	-				+0.5
4,759,707	+				+1.1
4,759,707	+				+1.3
4,759,707	+				+0.5
4,759,707	+				-0.9
4,759,707	+				+1.3
4,759,707	+				+0.4
4,759,707	+				-0.7
4,759,707	+				+0.1
4,759,707	+				+0.1
4,759,707	+				-0.4
4,759,707	+				+1.7
4,759,707	+				+1.3
4,759,707	+				+0.6
4,759,707	+				+0.5
4,759,707	+				+0.6
4,759,707	+				+0.9
4,759,707	+				-0.7
4,759,707	+				+0.3
4,759,707	+				+0.1
4,759,707	+				-0.9
4,759,708	-				-1.1
4,759,708	-				+0.7
4,759,708	-				-0.6
4,759,708	-				-0.5
4,759,708	-				+0.1
4,759,708	-				+0.2
4,759,708	-				+1.4
4,759,708	-				-0.2
4,759,708	-				+0.3
4,759,708	-				+1.9
4,759,708	-				-0.2
4,759,708	-				+0.4
4,759,708	-				+0.9
4,759,708	-				-0.5
4,759,720	+				+0.6
4,759,720	+				+0.2
4,759,741	+				+0.2
4,759,792	+				+0.3
4,759,792	+				+1.3
4,759,792	+				-0.1
4,759,792	+				-1.0
4,759,792	+				+1.5
4,759,792	+				+0.2
4,759,793	-				+1.6
4,759,809	+				+0.3
4,759,809	+				+1.3
4,759,809	+				+2.0
4,759,809	+				+0.1
4,759,809	+				+0.9
4,759,809	+				+2.0
4,759,809	+				+1.2
4,759,810	-				+0.0
4,759,810	-				-0.9
4,759,825	+				-2.1
4,759,825	+				+0.8
4,759,826	-				-0.0
4,759,826	-				+0.3
4,759,826	-				-2.6
4,759,968	+		HGI48_RS21320	0.16	-0.4
4,759,968	+		HGI48_RS21320	0.16	+0.8
4,759,968	+		HGI48_RS21320	0.16	-0.2
4,759,968	+		HGI48_RS21320	0.16	+1.0
4,759,968	+		HGI48_RS21320	0.16	+0.7
4,759,969	-		HGI48_RS21320	0.16	+0.1
4,760,007	+		HGI48_RS21320	0.21	+0.9
4,760,007	+				+3.2
4,760,008	-				+0.3
4,760,423	+		HGI48_RS21320	0.67	+0.8
4,760,423	+		HGI48_RS21320	0.67	+0.9
4,760,423	+		HGI48_RS21320	0.67	+1.4
4,760,423	+		HGI48_RS21320	0.67	-0.8
4,760,423	+		HGI48_RS21320	0.67	+0.9
4,760,423	+		HGI48_RS21320	0.67	+0.9
4,760,423	+		HGI48_RS21320	0.67	+1.1
4,760,424	-		HGI48_RS21320	0.67	-0.5
4,760,427	+		HGI48_RS21320	0.68	-1.3
4,760,516	+		HGI48_RS21320	0.78	+0.7
4,760,546	-		HGI48_RS21320	0.81	-1.6
4,760,603	+		HGI48_RS21320	0.87	-0.9
4,760,604	-		HGI48_RS21320	0.88	-0.3
4,760,633	+				+0.2
4,760,633	+				-1.1
4,760,693	+				-2.3
4,760,693	+				+1.4
4,760,693	+				-0.7
4,760,693	+				-0.5
4,760,693	+				+0.5
4,760,694	-				+0.2
4,760,694	-				+0.1
4,760,743	-				-0.4
4,760,746	+				+0.5
4,760,746	+				-0.7
4,760,746	+				+0.4
4,760,746	+				-0.1
4,760,746	+				-0.7
4,760,747	-				-0.1
4,760,747	-				-0.1
4,760,758	+				+1.2
4,760,758	+				-0.7
4,760,758	+				-0.7
4,760,759	-				-0.7
4,760,759	-				-0.6
4,760,762	+				-0.4
4,760,762	+				-1.9
4,760,763	-				-1.7
4,760,783	-				+1.9
4,760,808	+				+0.2
4,760,808	+				-1.0
4,760,808	+				-1.1
4,760,809	-				-0.7
4,760,811	+				-1.1
4,760,811	+				-1.5
4,760,811	+				+0.4
4,760,811	+				+0.3
4,760,811	+				-2.1
4,760,812	-				+0.7
4,760,812	-				-0.5
4,760,812	-				-1.5
4,760,812	-				-0.6
4,760,812	-				+0.5
4,760,826	-				+0.9
4,760,833	+				+0.6
4,760,833	+				-0.9
4,760,833	+				-0.1
4,760,833	+				+0.4
4,760,833	+				-0.6
4,760,834	-				+0.3
4,760,834	-				-0.4
4,760,834	-				-0.7
4,760,834	-				-0.5
4,760,834	-				-0.1
4,760,834	-				+0.9
4,760,834	-				+0.4
4,760,834	-				-0.7
4,760,842	+		HGI48_RS21325	0.10	-0.1
4,760,896	+				+0.9
4,761,001	+		HGI48_RS21325	0.27	-0.7
4,761,005	-				+1.3
4,761,040	-		HGI48_RS21325	0.31	-0.4
4,761,058	+		HGI48_RS21325	0.33	+1.4
4,761,058	+		HGI48_RS21325	0.33	-0.5
4,761,058	+		HGI48_RS21325	0.33	-0.5
4,761,058	+				+0.3
4,761,058	+		HGI48_RS21325	0.33	-1.1
4,761,059	-				+1.3
4,761,111	+		HGI48_RS21325	0.38	-0.5
4,761,111	+				-0.1
4,761,112	-		HGI48_RS21325	0.38	-0.6
4,761,112	-		HGI48_RS21325	0.38	+0.1
4,761,112	-		HGI48_RS21325	0.38	+0.3
4,761,112	-		HGI48_RS21325	0.38	-0.2
4,761,115	+		HGI48_RS21325	0.39	+1.1
4,761,115	+		HGI48_RS21325	0.39	-0.7
4,761,115	+				+0.9
4,761,115	+		HGI48_RS21325	0.39	-1.2
4,761,115	+		HGI48_RS21325	0.39	+1.2
4,761,115	+		HGI48_RS21325	0.39	+1.4
4,761,115	+		HGI48_RS21325	0.39	-0.1
4,761,116	-		HGI48_RS21325	0.39	-0.9
4,761,116	-		HGI48_RS21325	0.39	+1.2
4,761,116	-		HGI48_RS21325	0.39	+0.0
4,761,116	-				+2.4
4,761,116	-		HGI48_RS21325	0.39	-2.1
4,761,116	-		HGI48_RS21325	0.39	-0.3
4,761,116	-		HGI48_RS21325	0.39	-1.7
4,761,116	-		HGI48_RS21325	0.39	-1.0
4,761,118	-		HGI48_RS21325	0.39	-0.4
4,761,118	-		HGI48_RS21325	0.39	-0.6
4,761,147	+		HGI48_RS21325	0.42	+0.6
4,761,147	+		HGI48_RS21325	0.42	-0.5
4,761,147	+		HGI48_RS21325	0.42	-0.5
4,761,148	-		HGI48_RS21325	0.42	-0.8
4,761,148	-		HGI48_RS21325	0.42	+0.9
4,761,164	+		HGI48_RS21325	0.44	-0.5
4,761,164	+		HGI48_RS21325	0.44	+0.4
4,761,165	-		HGI48_RS21325	0.44	+0.4
4,761,190	+				-0.7
4,761,191	-		HGI48_RS21325	0.46	+0.1
4,761,191	-		HGI48_RS21325	0.46	-0.6
4,761,194	+				+0.3
4,761,194	+		HGI48_RS21325	0.47	-0.7
4,761,194	+				-0.7
4,761,194	+		HGI48_RS21325	0.47	-0.8
4,761,195	-		HGI48_RS21325	0.47	+0.0
4,761,195	-		HGI48_RS21325	0.47	-1.6
4,761,195	-		HGI48_RS21325	0.47	-2.5
4,761,195	-		HGI48_RS21325	0.47	-0.5
4,761,195	-		HGI48_RS21325	0.47	+0.5
4,761,227	+				+1.3
4,761,277	+		HGI48_RS21325	0.55	+0.7
4,761,279	+		HGI48_RS21325	0.56	-1.7
4,761,279	+		HGI48_RS21325	0.56	-0.3
4,761,279	+		HGI48_RS21325	0.56	-1.5
4,761,279	+		HGI48_RS21325	0.56	+1.2
4,761,279	+		HGI48_RS21325	0.56	+0.9
4,761,279	+		HGI48_RS21325	0.56	-1.5
4,761,280	-		HGI48_RS21325	0.56	-0.1
4,761,280	-				+1.6
4,761,280	-		HGI48_RS21325	0.56	-0.7
4,761,280	-		HGI48_RS21325	0.56	-0.5
4,761,280	-		HGI48_RS21325	0.56	+0.9
4,761,536	-		HGI48_RS21325	0.82	+0.2
4,761,639	-				+0.1
4,761,694	+				+0.4
4,761,694	+				-1.5
4,761,694	+				-3.2
4,761,695	-				+0.2
4,761,695	-				-0.1
4,761,695	-				+0.2