Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21265

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,748,562	-				+1.6
4,748,608	-				-0.7
4,748,619	-				+0.0
4,748,619	-				+0.5
4,748,619	-				+0.9
4,748,639	+				-0.5
4,748,639	+				-0.0
4,748,640	-				-0.1
4,748,640	-				+1.4
4,748,640	-				-1.1
4,748,640	-				+0.6
4,748,705	+				+1.5
4,748,808	+				-0.1
4,748,808	+				-0.7
4,748,808	+				+0.3
4,748,836	+				+0.5
4,748,838	+				+0.3
4,748,838	+				+0.1
4,748,838	+				-0.4
4,748,838	+				+0.1
4,748,839	-				-0.4
4,748,839	-				-0.6
4,748,839	-				+0.9
4,748,840	+				-0.1
4,748,840	+				+0.9
4,748,954	+				+0.9
4,748,955	-				+0.9
4,748,980	+				-1.8
4,748,981	-				+0.1
4,748,981	-				+1.9
4,748,981	-				+0.3
4,749,002	+				+0.2
4,749,002	+				-0.5
4,749,003	-				-1.5
4,749,012	+				-1.7
4,749,012	+				+0.3
4,749,040	+		HGI48_RS21265	0.14	+0.5
4,749,047	+				+0.3
4,749,048	-		HGI48_RS21265	0.15	-0.9
4,749,048	-		HGI48_RS21265	0.15	-2.5
4,749,048	-		HGI48_RS21265	0.15	-2.7
4,749,048	-		HGI48_RS21265	0.15	-2.7
4,749,142	-		HGI48_RS21265	0.30	-1.5
4,749,158	+				+0.3
4,749,158	+		HGI48_RS21265	0.33	+0.6
4,749,158	+		HGI48_RS21265	0.33	-0.1
4,749,158	+		HGI48_RS21265	0.33	-2.1
4,749,159	-		HGI48_RS21265	0.33	-0.7
4,749,159	-		HGI48_RS21265	0.33	+0.1
4,749,190	+		HGI48_RS21265	0.38	-1.9
4,749,190	+		HGI48_RS21265	0.38	-0.6
4,749,191	-		HGI48_RS21265	0.38	-1.7
4,749,191	-				-0.1
4,749,285	+		HGI48_RS21265	0.53	+0.5
4,749,285	+				+0.9
4,749,285	+		HGI48_RS21265	0.53	-1.5
4,749,286	-				-0.7
4,749,290	-		HGI48_RS21265	0.54	-1.1
4,749,344	+		HGI48_RS21265	0.63	-1.5
4,749,344	+		HGI48_RS21265	0.63	-1.7
4,749,344	+		HGI48_RS21265	0.63	+0.7
4,749,345	-		HGI48_RS21265	0.63	+0.4
4,749,345	-		HGI48_RS21265	0.63	+0.2
4,749,345	-		HGI48_RS21265	0.63	-1.5
4,749,345	-		HGI48_RS21265	0.63	+1.5
4,749,345	-		HGI48_RS21265	0.63	-1.5
4,749,345	-		HGI48_RS21265	0.63	-1.5
4,749,402	-		HGI48_RS21265	0.72	+0.1
4,749,434	+		HGI48_RS21265	0.77	-0.5
4,749,434	+		HGI48_RS21265	0.77	-0.0
4,749,435	-		HGI48_RS21265	0.77	-0.6
4,749,489	+		HGI48_RS21265	0.86	-1.1
4,749,489	+		HGI48_RS21265	0.86	+0.5
4,749,501	+		HGI48_RS21265	0.88	+0.1
4,749,502	-		HGI48_RS21265	0.88	-2.3
4,749,502	-		HGI48_RS21265	0.88	+0.6
4,749,566	-				+1.4
4,749,576	+				+0.2
4,749,577	-				+0.5
4,749,577	-				-1.7
4,749,577	-				+2.7
4,749,586	-				+0.5
4,749,586	-				+1.1
4,749,586	-				+0.7
4,749,586	-				-0.1
4,749,593	+				-1.7
4,749,593	+				+0.6
4,749,593	+				+1.1
4,749,594	-				-0.3
4,749,594	-				+0.4
4,749,594	-				-0.9
4,749,594	-				+0.5
4,749,594	-				-0.6
4,749,603	+				+1.9
4,749,603	+				-0.7
4,749,603	+				+1.1
4,749,603	+				+0.1
4,749,604	-				-1.5
4,749,604	-				-1.3
4,749,604	-				-0.6
4,749,604	-				+0.7
4,749,644	+				-0.7
4,749,645	-				-0.1
4,749,661	+				+0.1
4,749,709	+		HGI48_RS21270	0.11	+0.4
4,749,756	+		HGI48_RS21270	0.16	-0.1
4,749,756	+		HGI48_RS21270	0.16	-0.1
4,749,756	+		HGI48_RS21270	0.16	+0.9
4,749,766	+		HGI48_RS21270	0.17	+0.6
4,749,766	+		HGI48_RS21270	0.17	+0.1
4,749,767	-		HGI48_RS21270	0.17	-0.3
4,749,767	-		HGI48_RS21270	0.17	-1.1
4,749,767	-		HGI48_RS21270	0.17	-0.9
4,749,831	+		HGI48_RS21270	0.24	-0.1
4,749,831	+		HGI48_RS21270	0.24	-0.1
4,749,831	+		HGI48_RS21270	0.24	-0.1
4,749,832	-		HGI48_RS21270	0.24	-0.5
4,749,884	+				+2.4
4,749,885	-		HGI48_RS21270	0.29	-0.6
4,749,905	+		HGI48_RS21270	0.31	-0.6
4,749,968	-		HGI48_RS21270	0.37	-1.6
4,750,015	+		HGI48_RS21270	0.42	+0.4
4,750,015	+		HGI48_RS21270	0.42	-1.1
4,750,016	-		HGI48_RS21270	0.42	-1.0
4,750,016	-		HGI48_RS21270	0.42	-2.6
4,750,016	-		HGI48_RS21270	0.42	-1.5
4,750,100	-		HGI48_RS21270	0.51	+0.1
4,750,131	+		HGI48_RS21270	0.54	+1.4
4,750,132	-		HGI48_RS21270	0.54	-0.9
4,750,150	+		HGI48_RS21270	0.56	+1.0
4,750,150	+		HGI48_RS21270	0.56	+0.4
4,750,151	-		HGI48_RS21270	0.56	+0.5
4,750,151	-				+0.3
4,750,151	-		HGI48_RS21270	0.56	+0.4
4,750,151	-		HGI48_RS21270	0.56	-0.1
4,750,204	-				+1.9
4,750,204	-		HGI48_RS21270	0.61	+0.7
4,750,245	+		HGI48_RS21270	0.65	-1.7
4,750,316	+		HGI48_RS21270	0.73	+0.6
4,750,316	+		HGI48_RS21270	0.73	-1.7
4,750,316	+		HGI48_RS21270	0.73	-0.5
4,750,385	-				+1.3
4,750,431	+		HGI48_RS21270	0.84	+0.6
4,750,432	-		HGI48_RS21270	0.84	+0.4
4,750,438	+		HGI48_RS21270	0.85	-0.1
4,750,439	-		HGI48_RS21270	0.85	-0.3
4,750,454	-				+0.3
4,750,476	+		HGI48_RS21270	0.89	+0.4
4,750,477	-		HGI48_RS21270	0.89	-2.1
4,750,480	+		HGI48_RS21270	0.89	+0.4
4,750,480	+		HGI48_RS21270	0.89	+0.7
4,750,480	+		HGI48_RS21270	0.89	-1.1
4,750,480	+		HGI48_RS21270	0.89	+0.2
4,750,480	+		HGI48_RS21270	0.89	+0.2
4,750,480	+		HGI48_RS21270	0.89	-0.4
4,750,480	+		HGI48_RS21270	0.89	+0.3
4,750,480	+		HGI48_RS21270	0.89	-0.1
4,750,480	+		HGI48_RS21270	0.89	+0.0
4,750,480	+		HGI48_RS21270	0.89	-0.5
4,750,481	-		HGI48_RS21270	0.89	+1.1
4,750,481	-		HGI48_RS21270	0.89	+0.3
4,750,481	-		HGI48_RS21270	0.89	-1.5
4,750,481	-		HGI48_RS21270	0.89	+0.4
4,750,481	-		HGI48_RS21270	0.89	+0.5
4,750,481	-				+1.3
4,750,483	+		HGI48_RS21270	0.90	-0.6
4,750,483	+		HGI48_RS21270	0.90	-1.1
4,750,483	+		HGI48_RS21270	0.90	+2.0
4,750,483	+		HGI48_RS21270	0.90	-0.5
4,750,483	+		HGI48_RS21270	0.90	-1.3
4,750,483	+		HGI48_RS21270	0.90	-0.0
4,750,484	-		HGI48_RS21270	0.90	+0.1
4,750,484	-		HGI48_RS21270	0.90	-1.5
4,750,484	-		HGI48_RS21270	0.90	+0.4
4,750,484	-		HGI48_RS21270	0.90	+1.2
4,750,484	-		HGI48_RS21270	0.90	-1.7
4,750,484	-		HGI48_RS21270	0.90	-0.7
4,750,484	-		HGI48_RS21270	0.90	-1.1
4,750,559	-				+0.7
4,750,559	-				+0.3
4,750,559	-				-2.1