Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21020

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,690,414	+				+1.3
4,690,414	+				-0.4
4,690,415	-				-0.6
4,690,415	-				-1.1
4,690,415	-				+2.2
4,690,418	+				-1.1
4,690,418	+				-0.9
4,690,418	+				-0.2
4,690,418	+				-0.1
4,690,418	+				+1.2
4,690,418	+				+1.1
4,690,418	+				+0.5
4,690,418	+				-0.1
4,690,418	+				-1.1
4,690,418	+				-0.4
4,690,419	-				-0.5
4,690,419	-				+0.3
4,690,419	-				-0.3
4,690,419	-				-0.7
4,690,419	-				-0.5
4,690,420	+				-0.8
4,690,440	+				-0.3
4,690,440	+				+0.5
4,690,441	-				-1.1
4,690,449	+				-1.1
4,690,449	+				-0.1
4,690,450	-				-0.0
4,690,450	-				-0.7
4,690,450	-				-0.2
4,690,450	-				-1.1
4,690,454	-				-0.7
4,690,454	-				-1.5
4,690,454	-				+0.1
4,690,454	-				+0.1
4,690,454	-				-1.8
4,690,454	-				-0.7
4,690,475	+				+0.5
4,690,486	+				+0.3
4,690,486	+				+0.4
4,690,605	+				-0.1
4,690,605	+				-0.5
4,690,605	+				-0.4
4,690,605	+				-0.1
4,690,606	-				-0.1
4,690,606	-				+0.1
4,690,606	-				+0.9
4,690,617	-				-0.7
4,690,622	-				-0.7
4,690,669	+				+0.1
4,690,669	+				-1.7
4,690,703	+				-0.3
4,690,704	-				-0.1
4,690,705	+				+0.2
4,690,705	+				+2.1
4,690,705	+				+0.3
4,690,706	-				-0.1
4,690,706	-				+1.9
4,690,706	-				-0.7
4,690,706	-				-0.7
4,690,721	+				-1.5
4,690,735	+				+0.5
4,690,747	+				-0.3
4,690,747	+				-0.4
4,690,747	+				-0.9
4,690,747	+				-0.9
4,690,748	-				-0.7
4,690,748	-				+0.1
4,690,751	+				-0.2
4,690,751	+				+1.6
4,690,751	+				-0.4
4,690,752	-				-1.5
4,690,752	-				-1.7
4,690,786	+				+0.0
4,690,786	+				-0.3
4,690,786	+				-1.4
4,690,786	+				+0.9
4,690,786	+				-0.1
4,690,787	-				+0.9
4,690,804	+				+0.9
4,690,806	+				-0.1
4,690,806	+				+1.7
4,690,806	+				-0.4
4,690,807	-				-1.9
4,690,831	+				-0.9
4,690,832	-				-1.1
4,690,834	+				+2.1
4,690,857	+				-0.5
4,690,857	+				-0.7
4,690,857	+				+0.9
4,690,858	-				-1.5
4,690,858	-				-0.7
4,690,858	-				+0.1
4,690,858	-				-0.5
4,690,892	+		HGI48_RS21015	0.20	-0.9
4,690,893	-		HGI48_RS21015	0.20	+0.4
4,690,946	+		HGI48_RS21015	0.36	-0.7
4,690,946	+		HGI48_RS21015	0.36	+0.9
4,690,952	+		HGI48_RS21015	0.38	-0.5
4,690,952	+		HGI48_RS21015	0.38	-0.5
4,690,952	+		HGI48_RS21015	0.38	+0.4
4,690,953	-				-0.1
4,691,018	+		HGI48_RS21015	0.57	+1.1
4,691,018	+		HGI48_RS21015	0.57	-0.1
4,691,019	-		HGI48_RS21015	0.57	-2.1
4,691,024	+		HGI48_RS21015	0.59	+0.6
4,691,024	+		HGI48_RS21015	0.59	+1.4
4,691,024	+		HGI48_RS21015	0.59	-1.3
4,691,025	-		HGI48_RS21015	0.59	+0.6
4,691,036	+		HGI48_RS21015	0.62	-0.7
4,691,036	+		HGI48_RS21015	0.62	-1.5
4,691,160	-				-2.3
4,691,160	-				-1.5
4,691,183	-				-1.0
4,691,193	+				+1.2
4,691,193	+				+0.2
4,691,194	-				-0.1
4,691,194	-				+0.3
4,691,194	-				+0.4
4,691,194	-				+0.9
4,691,194	-				-0.2
4,691,194	-				-2.7
4,691,244	+				+0.6
4,691,244	+				+0.9
4,691,244	+				-0.5
4,691,244	+				+0.4
4,691,244	+				-0.5
4,691,244	+				+1.4
4,691,245	-				+0.4
4,691,245	-				-1.0
4,691,287	+				-0.1
4,691,337	+				+0.3
4,691,338	-				-0.5
4,691,352	+				+0.9
4,691,353	-				-0.1
4,691,376	+				+0.3
4,691,376	+				-1.8
4,691,413	+				-1.1
4,691,504	+		HGI48_RS21020	0.10	+0.1
4,691,505	-		HGI48_RS21020	0.10	-2.0
4,691,535	+		HGI48_RS21020	0.12	-0.9
4,691,536	-		HGI48_RS21020	0.12	-0.7
4,691,536	-		HGI48_RS21020	0.12	+0.2
4,691,536	-				-0.1
4,691,536	-		HGI48_RS21020	0.12	-1.5
4,691,592	+		HGI48_RS21020	0.16	+0.2
4,691,592	+		HGI48_RS21020	0.16	+0.4
4,691,656	+		HGI48_RS21020	0.20	-0.5
4,691,656	+		HGI48_RS21020	0.20	-2.1
4,691,721	+		HGI48_RS21020	0.25	-1.1
4,691,722	-		HGI48_RS21020	0.25	-0.1
4,691,722	-		HGI48_RS21020	0.25	-0.9
4,691,804	-				+0.3
4,691,926	+				+0.9
4,691,926	+		HGI48_RS21020	0.38	-0.0
4,691,926	+		HGI48_RS21020	0.38	-2.1
4,691,927	-		HGI48_RS21020	0.38	-0.1
4,691,927	-		HGI48_RS21020	0.38	-1.5
4,691,927	-		HGI48_RS21020	0.38	-1.0
4,692,005	+		HGI48_RS21020	0.43	-0.9
4,692,005	+				-0.1
4,692,006	-		HGI48_RS21020	0.43	+0.9
4,692,006	-		HGI48_RS21020	0.43	+0.4
4,692,039	+				+0.3
4,692,039	+		HGI48_RS21020	0.46	-0.9
4,692,042	+		HGI48_RS21020	0.46	-0.5
4,692,042	+		HGI48_RS21020	0.46	-1.9
4,692,043	-		HGI48_RS21020	0.46	-1.1
4,692,043	-		HGI48_RS21020	0.46	-1.1
4,692,043	-				+0.9
4,692,050	+		HGI48_RS21020	0.46	-1.3
4,692,050	+		HGI48_RS21020	0.46	+0.7
4,692,050	+		HGI48_RS21020	0.46	-1.9
4,692,051	-		HGI48_RS21020	0.46	-1.5
4,692,051	-		HGI48_RS21020	0.46	-0.1
4,692,051	-		HGI48_RS21020	0.46	-0.7
4,692,051	-		HGI48_RS21020	0.46	+0.4
4,692,112	+		HGI48_RS21020	0.50	-1.1
4,692,113	-		HGI48_RS21020	0.50	-1.6
4,692,307	+		HGI48_RS21020	0.63	-0.1
4,692,308	-				-0.7
4,692,308	-		HGI48_RS21020	0.63	-0.7
4,692,310	+		HGI48_RS21020	0.64	-1.7
4,692,336	+		HGI48_RS21020	0.65	-1.0
4,692,336	+				-0.7
4,692,337	-		HGI48_RS21020	0.65	-1.1
4,692,397	+		HGI48_RS21020	0.69	-1.0
4,692,398	-		HGI48_RS21020	0.69	-1.1
4,692,416	-		HGI48_RS21020	0.71	-2.2
4,692,544	+				+1.6
4,692,595	+		HGI48_RS21020	0.82	-1.7
4,692,729	+				-1.8
4,692,729	+				+0.5
4,692,729	+				-1.1
4,692,730	-				-1.5
4,692,730	-				-1.5
4,692,730	-				+0.9
4,692,733	+				-2.5
4,692,733	+				-0.7
4,692,733	+				-0.5
4,692,734	-				+0.9
4,692,784	-				+0.1
4,692,797	+				+1.5
4,692,797	+				-1.5
4,692,797	+				-1.7
4,692,797	+				-0.5
4,692,798	-				-1.6
4,692,798	-				+0.1
4,692,798	-				+0.2
4,692,855	-				-1.3
4,692,860	-				+0.9
4,692,860	-				+1.9
4,692,860	-				-1.7
4,692,875	+				+0.1
4,692,875	+				-2.3
4,692,876	-				-0.6
4,692,876	-				-0.7
4,692,876	-				-0.3
4,692,876	-				-0.2
4,692,876	-				+0.3
4,692,876	-				+0.9
4,692,876	-				-0.2
4,692,939	+				+0.3
4,692,939	+				-2.1
4,692,949	+				-1.8
4,692,950	-				-0.3
4,693,117	+				+0.1
4,693,117	+				-0.5
4,693,117	+				+0.5
4,693,166	+				+0.1
4,693,167	-				+0.6
4,693,186	+				-1.0
4,693,186	+				-1.9
4,693,187	-				-0.5
4,693,187	-				-1.3
4,693,187	-				+0.0
4,693,187	-				-0.9
4,693,187	-				+0.6
4,693,333	+		HGI48_RS21025	0.14	-0.1
4,693,333	+		HGI48_RS21025	0.14	+1.2
4,693,334	-		HGI48_RS21025	0.14	-0.1
4,693,334	-				+0.3
4,693,334	-		HGI48_RS21025	0.14	+0.1
4,693,334	-		HGI48_RS21025	0.14	-0.5
4,693,336	-		HGI48_RS21025	0.14	+0.6
4,693,353	+		HGI48_RS21025	0.15	+0.7
4,693,353	+		HGI48_RS21025	0.15	+0.0
4,693,354	-		HGI48_RS21025	0.15	+1.0
4,693,354	-		HGI48_RS21025	0.15	-0.9
4,693,506	-		HGI48_RS21025	0.28	+0.1
4,693,764	-		HGI48_RS21025	0.49	+0.3