Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20490 and HGI48_RS20495 are separated by 109 nucleotides HGI48_RS20495 and HGI48_RS20500 are separated by 13 nucleotides HGI48_RS20500 and HGI48_RS20505 are separated by 148 nucleotides
HGI48_RS20490: HGI48_RS20490 - class II fructose-bisphosphatase, at 4,580,911 to 4,581,921
_RS20490
HGI48_RS20495: HGI48_RS20495 - ferredoxin--NADP(+) reductase, at 4,582,031 to 4,582,777
_RS20495
HGI48_RS20500: HGI48_RS20500 - DUF805 domain-containing protein, at 4,582,791 to 4,583,216
_RS20500
HGI48_RS20505: HGI48_RS20505 - YiiQ family protein, at 4,583,365 to 4,583,958
_RS20505
Position (kb) 4582
4583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4581.109 kb on + strand at 4581.109 kb on + strand, within HGI48_RS20490 at 4581.110 kb on - strand, within HGI48_RS20490 at 4581.110 kb on - strand, within HGI48_RS20490 at 4581.204 kb on + strand at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.265 kb on + strand at 4581.265 kb on + strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.266 kb on - strand, within HGI48_RS20490 at 4581.389 kb on + strand, within HGI48_RS20490 at 4581.446 kb on + strand, within HGI48_RS20490 at 4581.447 kb on - strand, within HGI48_RS20490 at 4581.527 kb on - strand, within HGI48_RS20490 at 4581.527 kb on - strand, within HGI48_RS20490 at 4581.527 kb on - strand, within HGI48_RS20490 at 4581.747 kb on - strand, within HGI48_RS20490 at 4581.747 kb on - strand, within HGI48_RS20490 at 4581.878 kb on - strand at 4581.967 kb on - strand at 4581.972 kb on - strand at 4581.984 kb on + strand at 4581.984 kb on + strand at 4581.985 kb on - strand at 4581.985 kb on - strand at 4582.024 kb on + strand at 4582.024 kb on + strand at 4582.024 kb on + strand at 4582.024 kb on + strand at 4582.024 kb on + strand at 4582.024 kb on + strand at 4582.025 kb on - strand at 4582.025 kb on - strand at 4582.025 kb on - strand at 4582.025 kb on - strand at 4582.058 kb on - strand at 4582.087 kb on - strand at 4582.184 kb on + strand, within HGI48_RS20495 at 4582.184 kb on + strand, within HGI48_RS20495 at 4582.190 kb on + strand, within HGI48_RS20495 at 4582.190 kb on + strand, within HGI48_RS20495 at 4582.190 kb on + strand, within HGI48_RS20495 at 4582.191 kb on - strand, within HGI48_RS20495 at 4582.191 kb on - strand, within HGI48_RS20495 at 4582.191 kb on - strand, within HGI48_RS20495 at 4582.226 kb on + strand, within HGI48_RS20495 at 4582.226 kb on + strand, within HGI48_RS20495 at 4582.227 kb on - strand, within HGI48_RS20495 at 4582.227 kb on - strand, within HGI48_RS20495 at 4582.256 kb on - strand, within HGI48_RS20495 at 4582.391 kb on + strand, within HGI48_RS20495 at 4582.391 kb on + strand, within HGI48_RS20495 at 4582.391 kb on + strand, within HGI48_RS20495 at 4582.392 kb on - strand, within HGI48_RS20495 at 4582.450 kb on - strand, within HGI48_RS20495 at 4582.515 kb on - strand, within HGI48_RS20495 at 4582.515 kb on - strand, within HGI48_RS20495 at 4582.753 kb on + strand at 4582.753 kb on + strand at 4582.753 kb on + strand at 4582.754 kb on - strand at 4582.754 kb on - strand at 4582.754 kb on - strand at 4582.754 kb on - strand at 4582.769 kb on + strand at 4582.769 kb on + strand at 4582.786 kb on - strand at 4582.786 kb on - strand at 4583.061 kb on + strand, within HGI48_RS20500 at 4583.062 kb on - strand, within HGI48_RS20500 at 4583.208 kb on + strand at 4583.208 kb on + strand at 4583.208 kb on + strand at 4583.209 kb on - strand at 4583.243 kb on - strand at 4583.256 kb on + strand at 4583.257 kb on - strand at 4583.261 kb on + strand at 4583.262 kb on - strand at 4583.262 kb on - strand at 4583.262 kb on - strand at 4583.318 kb on - strand at 4583.339 kb on + strand at 4583.339 kb on + strand at 4583.349 kb on + strand at 4583.349 kb on + strand at 4583.352 kb on + strand at 4583.352 kb on + strand at 4583.353 kb on - strand at 4583.355 kb on + strand at 4583.355 kb on + strand at 4583.356 kb on - strand at 4583.408 kb on + strand at 4583.493 kb on + strand, within HGI48_RS20505 at 4583.493 kb on + strand, within HGI48_RS20505 at 4583.494 kb on - strand, within HGI48_RS20505 at 4583.494 kb on - strand, within HGI48_RS20505 at 4583.494 kb on - strand, within HGI48_RS20505 at 4583.513 kb on + strand at 4583.514 kb on - strand at 4583.530 kb on + strand, within HGI48_RS20505 at 4583.638 kb on + strand at 4583.638 kb on + strand, within HGI48_RS20505 at 4583.638 kb on + strand, within HGI48_RS20505 at 4583.639 kb on - strand, within HGI48_RS20505 at 4583.639 kb on - strand, within HGI48_RS20505 at 4583.670 kb on + strand at 4583.675 kb on + strand, within HGI48_RS20505 at 4583.691 kb on + strand at 4583.691 kb on + strand, within HGI48_RS20505 at 4583.692 kb on - strand at 4583.692 kb on - strand, within HGI48_RS20505
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,581,109 + -0.7 4,581,109 + HGI48_RS20490 0.20 -0.1 4,581,110 - HGI48_RS20490 0.20 +0.5 4,581,110 - HGI48_RS20490 0.20 +0.3 4,581,204 + -0.7 4,581,265 + HGI48_RS20490 0.35 +1.4 4,581,265 + HGI48_RS20490 0.35 -0.7 4,581,265 + HGI48_RS20490 0.35 -0.1 4,581,265 + HGI48_RS20490 0.35 -0.5 4,581,265 + HGI48_RS20490 0.35 -0.4 4,581,265 + HGI48_RS20490 0.35 -0.1 4,581,265 + HGI48_RS20490 0.35 -1.0 4,581,265 + HGI48_RS20490 0.35 +0.3 4,581,265 + HGI48_RS20490 0.35 -0.5 4,581,265 + HGI48_RS20490 0.35 +0.2 4,581,265 + +3.2 4,581,265 + HGI48_RS20490 0.35 -0.7 4,581,266 - HGI48_RS20490 0.35 -1.1 4,581,266 - HGI48_RS20490 0.35 -0.5 4,581,266 - -0.7 4,581,266 - HGI48_RS20490 0.35 -1.7 4,581,266 - HGI48_RS20490 0.35 +0.5 4,581,266 - HGI48_RS20490 0.35 -1.1 4,581,266 - HGI48_RS20490 0.35 +0.3 4,581,266 - HGI48_RS20490 0.35 +0.1 4,581,266 - HGI48_RS20490 0.35 -1.1 4,581,266 - HGI48_RS20490 0.35 +0.0 4,581,266 - HGI48_RS20490 0.35 -0.3 4,581,389 + HGI48_RS20490 0.47 -1.5 4,581,446 + HGI48_RS20490 0.53 -0.5 4,581,447 - HGI48_RS20490 0.53 -1.3 4,581,527 - HGI48_RS20490 0.61 -0.3 4,581,527 - HGI48_RS20490 0.61 -0.0 4,581,527 - HGI48_RS20490 0.61 +0.3 4,581,747 - HGI48_RS20490 0.83 -0.5 4,581,747 - HGI48_RS20490 0.83 +0.9 4,581,878 - -0.4 4,581,967 - +0.3 4,581,972 - -1.0 4,581,984 + +0.1 4,581,984 + +0.2 4,581,985 - -0.7 4,581,985 - +0.4 4,582,024 + -1.5 4,582,024 + +0.4 4,582,024 + -0.1 4,582,024 + -0.2 4,582,024 + -0.5 4,582,024 + +0.1 4,582,025 - -1.3 4,582,025 - +0.2 4,582,025 - -0.7 4,582,025 - +0.5 4,582,058 - +0.3 4,582,087 - -2.8 4,582,184 + HGI48_RS20495 0.20 +0.1 4,582,184 + HGI48_RS20495 0.20 +0.2 4,582,190 + HGI48_RS20495 0.21 -1.5 4,582,190 + HGI48_RS20495 0.21 -2.5 4,582,190 + HGI48_RS20495 0.21 -0.7 4,582,191 - HGI48_RS20495 0.21 +0.9 4,582,191 - HGI48_RS20495 0.21 -0.1 4,582,191 - HGI48_RS20495 0.21 +0.1 4,582,226 + HGI48_RS20495 0.26 -1.5 4,582,226 + HGI48_RS20495 0.26 -0.7 4,582,227 - HGI48_RS20495 0.26 +0.9 4,582,227 - HGI48_RS20495 0.26 +0.5 4,582,256 - HGI48_RS20495 0.30 -0.9 4,582,391 + HGI48_RS20495 0.48 +0.1 4,582,391 + HGI48_RS20495 0.48 -1.5 4,582,391 + HGI48_RS20495 0.48 -0.1 4,582,392 - HGI48_RS20495 0.48 -2.0 4,582,450 - HGI48_RS20495 0.56 -1.1 4,582,515 - HGI48_RS20495 0.65 -1.1 4,582,515 - HGI48_RS20495 0.65 +0.3 4,582,753 + -1.7 4,582,753 + -1.1 4,582,753 + -0.5 4,582,754 - +0.3 4,582,754 - -0.9 4,582,754 - -0.7 4,582,754 - -1.6 4,582,769 + -0.4 4,582,769 + -2.7 4,582,786 - -0.0 4,582,786 - -0.5 4,583,061 + HGI48_RS20500 0.63 +0.5 4,583,062 - HGI48_RS20500 0.64 -1.7 4,583,208 + +1.7 4,583,208 + +0.2 4,583,208 + -1.1 4,583,209 - -1.7 4,583,243 - -1.5 4,583,256 + -0.9 4,583,257 - -0.5 4,583,261 + +0.3 4,583,262 - +0.3 4,583,262 - +1.6 4,583,262 - -0.1 4,583,318 - +0.9 4,583,339 + -1.3 4,583,339 + -1.1 4,583,349 + -1.5 4,583,349 + +0.4 4,583,352 + -2.1 4,583,352 + -0.9 4,583,353 - -0.7 4,583,355 + -1.7 4,583,355 + -0.5 4,583,356 - +0.1 4,583,408 + -0.0 4,583,493 + HGI48_RS20505 0.22 -0.4 4,583,493 + HGI48_RS20505 0.22 +0.9 4,583,494 - HGI48_RS20505 0.22 -0.7 4,583,494 - HGI48_RS20505 0.22 -2.7 4,583,494 - HGI48_RS20505 0.22 -1.5 4,583,513 + +0.9 4,583,514 - +0.9 4,583,530 + HGI48_RS20505 0.28 +0.5 4,583,638 + +1.5 4,583,638 + HGI48_RS20505 0.46 -0.1 4,583,638 + HGI48_RS20505 0.46 -0.2 4,583,639 - HGI48_RS20505 0.46 +0.9 4,583,639 - HGI48_RS20505 0.46 -1.5 4,583,670 + -0.7 4,583,675 + HGI48_RS20505 0.52 +1.3 4,583,691 + -0.1 4,583,691 + HGI48_RS20505 0.55 +0.3 4,583,692 - +0.3 4,583,692 - HGI48_RS20505 0.55 -0.5
Or see this region's nucleotide sequence