Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,576,067	-		HGI48_RS20465	0.14	-0.1
4,576,067	-		HGI48_RS20465	0.14	-0.9
4,576,227	+		HGI48_RS20465	0.31	-0.5
4,576,227	+		HGI48_RS20465	0.31	+0.4
4,576,227	+		HGI48_RS20465	0.31	-1.7
4,576,227	+		HGI48_RS20465	0.31	-0.8
4,576,228	-		HGI48_RS20465	0.31	-1.1
4,576,231	+		HGI48_RS20465	0.32	-1.9
4,576,231	+		HGI48_RS20465	0.32	-1.4
4,576,231	+		HGI48_RS20465	0.32	+0.9
4,576,232	-		HGI48_RS20465	0.32	-1.1
4,576,232	-				-0.7
4,576,360	+		HGI48_RS20465	0.46	+0.1
4,576,361	-		HGI48_RS20465	0.46	-0.1
4,576,361	-		HGI48_RS20465	0.46	-1.8
4,576,361	-		HGI48_RS20465	0.46	-1.1
4,576,364	+		HGI48_RS20465	0.46	+0.9
4,576,364	+		HGI48_RS20465	0.46	-1.1
4,576,364	+		HGI48_RS20465	0.46	+0.4
4,576,365	-		HGI48_RS20465	0.46	-0.7
4,576,365	-		HGI48_RS20465	0.46	-1.9
4,576,365	-		HGI48_RS20465	0.46	-0.7
4,576,365	-		HGI48_RS20465	0.46	-0.6
4,576,365	-		HGI48_RS20465	0.46	-0.4
4,576,366	+		HGI48_RS20465	0.46	-0.3
4,576,366	+		HGI48_RS20465	0.46	-0.5
4,576,366	+		HGI48_RS20465	0.46	-0.9
4,576,367	-				+0.9
4,576,367	-		HGI48_RS20465	0.46	+0.6
4,576,367	-		HGI48_RS20465	0.46	-2.7
4,576,379	-		HGI48_RS20465	0.48	-0.5
4,576,391	+				-0.7
4,576,391	+		HGI48_RS20465	0.49	-1.5
4,576,391	+		HGI48_RS20465	0.49	-0.1
4,576,391	+		HGI48_RS20465	0.49	-1.1
4,576,391	+		HGI48_RS20465	0.49	-1.9
4,576,391	+		HGI48_RS20465	0.49	+1.4
4,576,391	+		HGI48_RS20465	0.49	-1.5
4,576,392	-		HGI48_RS20465	0.49	-1.1
4,576,392	-		HGI48_RS20465	0.49	+0.2
4,576,392	-		HGI48_RS20465	0.49	-1.0
4,576,393	+		HGI48_RS20465	0.49	-1.7
4,576,454	+		HGI48_RS20465	0.56	-1.1
4,576,454	+		HGI48_RS20465	0.56	-0.1
4,576,455	-		HGI48_RS20465	0.56	-0.3
4,576,455	-		HGI48_RS20465	0.56	-0.3
4,576,455	-		HGI48_RS20465	0.56	+0.3
4,576,457	+		HGI48_RS20465	0.56	-0.2
4,576,458	-		HGI48_RS20465	0.56	-1.1
4,576,458	-		HGI48_RS20465	0.56	-0.5
4,576,630	+		HGI48_RS20465	0.75	+0.9
4,576,631	-		HGI48_RS20465	0.75	-0.3
4,576,631	-				+1.6
4,576,682	+		HGI48_RS20465	0.81	-0.8
4,576,682	+		HGI48_RS20465	0.81	-0.9
4,576,682	+		HGI48_RS20465	0.81	-1.5
4,576,682	+		HGI48_RS20465	0.81	+1.2
4,576,683	-		HGI48_RS20465	0.81	+0.4
4,576,690	+		HGI48_RS20465	0.82	-2.3
4,576,690	+		HGI48_RS20465	0.82	-1.9
4,576,691	-		HGI48_RS20465	0.82	-1.9
4,576,691	-		HGI48_RS20465	0.82	+1.4
4,576,748	+		HGI48_RS20465	0.88	-0.7
4,576,845	+				-0.7
4,576,857	-				-0.9
4,576,977	+				+1.7
4,576,977	+				+0.1
4,576,977	+				-0.1
4,576,978	-				+0.9
4,576,978	-				+0.5
4,576,978	-				+0.3
4,576,978	-				+0.6
4,576,978	-				-1.1
4,577,011	+				+0.1
4,577,011	+				+0.3
4,577,011	+				-1.5
4,577,012	-				+0.9
4,577,012	-				+1.5
4,577,024	+				+2.2
4,577,024	+				-0.0
4,577,024	+				+2.9
4,577,024	+				-0.7
4,577,024	+				-1.5
4,577,025	-				-1.5
4,577,030	-				-0.3
4,577,047	+				-0.9
4,577,047	+				-0.9
4,577,047	+				+0.5
4,577,048	-				+0.5
4,577,048	-				+0.2
4,577,048	-				+1.3
4,577,048	-				-0.5
4,577,051	+				+1.1
4,577,051	+				-0.7
4,577,051	+				-1.9
4,577,051	+				-0.5
4,577,051	+				-1.6
4,577,051	+				-1.1
4,577,051	+				+0.9
4,577,051	+				-1.5
4,577,051	+				-1.3
4,577,051	+				-0.1
4,577,052	-				-0.4
4,577,052	-				+1.7
4,577,052	-				-1.5
4,577,052	-				-1.7
4,577,052	-				+1.8
4,577,104	+				+1.9
4,577,104	+		HGI48_RS20470	0.18	-0.4
4,577,105	-		HGI48_RS20470	0.18	-0.1
4,577,313	+		HGI48_RS20470	0.61	-1.9
4,577,314	-		HGI48_RS20470	0.61	-1.1
4,577,450	+		HGI48_RS20470	0.89	+0.5
4,577,450	+		HGI48_RS20470	0.89	-0.1
4,577,450	+		HGI48_RS20470	0.89	+1.2
4,577,450	+		HGI48_RS20470	0.89	-1.1
4,577,450	+				+1.9
4,577,450	+		HGI48_RS20470	0.89	-1.9
4,577,451	-		HGI48_RS20470	0.89	+0.2
4,577,451	-		HGI48_RS20470	0.89	-0.3
4,577,451	-				+0.9
4,577,451	-		HGI48_RS20470	0.89	-1.1
4,577,570	+				+1.2
4,577,620	+		HGI48_RS20475	0.21	-0.0
4,577,620	+		HGI48_RS20475	0.21	+0.4
4,577,639	-		HGI48_RS20475	0.29	+0.9
4,577,706	+		HGI48_RS20475	0.56	-0.1
4,577,706	+		HGI48_RS20475	0.56	-0.5
4,577,706	+		HGI48_RS20475	0.56	-0.8
4,577,706	+		HGI48_RS20475	0.56	+0.1
4,577,706	+		HGI48_RS20475	0.56	-0.6
4,577,706	+		HGI48_RS20475	0.56	-1.9
4,577,706	+		HGI48_RS20475	0.56	-0.3
4,577,706	+		HGI48_RS20475	0.56	+0.5
4,577,706	+		HGI48_RS20475	0.56	+1.3
4,577,706	+		HGI48_RS20475	0.56	+0.6
4,577,707	-		HGI48_RS20475	0.57	-0.1
4,577,707	-		HGI48_RS20475	0.57	-1.1
4,577,707	-		HGI48_RS20475	0.57	-2.1
4,577,707	-				+0.9
4,577,707	-		HGI48_RS20475	0.57	-2.8
4,577,707	-		HGI48_RS20475	0.57	+0.0
4,577,811	+				-1.5
4,577,811	+				-2.8
4,577,811	+				+0.2
4,577,812	-				-0.9
4,577,818	+				-0.5
4,577,818	+				+2.2
4,577,819	-				-1.1
4,577,829	+				-0.2
4,577,829	+				+0.5
4,577,841	+				-2.8
4,577,841	+				+1.9
4,577,842	-				-0.1
4,577,842	-				-0.1
4,577,861	+				+0.9
4,577,861	+				-0.4
4,577,861	+				+1.9
4,577,861	+				-2.4
4,577,862	-				+0.9
4,577,862	-				-1.9
4,577,862	-				-0.5
4,577,862	-				-0.1
4,577,862	-				+0.9
4,577,862	-				+0.5
4,577,862	-				-1.3
4,577,862	-				+0.3
4,577,918	+				+0.2
4,577,919	-				+0.1
4,577,975	+				-1.9
4,577,976	-				-0.1
4,577,993	+				-1.7
4,577,993	+				+0.9
4,577,993	+				+1.1
4,577,993	+				-1.1
4,577,994	-				-0.5
4,577,994	-				+0.8
4,578,103	-				-1.7
4,578,127	+				+0.1
4,578,128	-				-1.3
4,578,128	-				+2.1
4,578,128	-				-2.1
4,578,180	+				+0.6
4,578,273	+				+0.5
4,578,374	+				-2.8
4,578,374	+				+0.4
4,578,374	+				+0.5
4,578,374	+				-0.1
4,578,374	+				-0.5
4,578,374	+				-1.5
4,578,374	+				+0.8
4,578,374	+				+0.1
4,578,375	-				+0.0
4,578,393	+				+0.7
4,578,485	+		HGI48_RS20480	0.11	+0.5