Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20125

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,497,259	+		HGI48_RS20120	0.56	+0.9
4,497,259	+		HGI48_RS20120	0.56	-1.3
4,497,259	+		HGI48_RS20120	0.56	+0.9
4,497,259	+		HGI48_RS20120	0.56	+0.3
4,497,259	+				+0.9
4,497,259	+		HGI48_RS20120	0.56	-0.1
4,497,259	+		HGI48_RS20120	0.56	-0.1
4,497,259	+		HGI48_RS20120	0.56	+0.0
4,497,259	+		HGI48_RS20120	0.56	+0.1
4,497,260	-		HGI48_RS20120	0.56	-2.1
4,497,260	-		HGI48_RS20120	0.56	-1.2
4,497,260	-		HGI48_RS20120	0.56	-1.9
4,497,260	-		HGI48_RS20120	0.56	+1.0
4,497,260	-		HGI48_RS20120	0.56	+1.0
4,497,260	-		HGI48_RS20120	0.56	+0.1
4,497,260	-		HGI48_RS20120	0.56	+0.4
4,497,260	-		HGI48_RS20120	0.56	-1.1
4,497,260	-		HGI48_RS20120	0.56	-1.7
4,497,260	-		HGI48_RS20120	0.56	+0.2
4,497,260	-		HGI48_RS20120	0.56	+0.5
4,497,260	-		HGI48_RS20120	0.56	-0.1
4,497,260	-		HGI48_RS20120	0.56	+0.7
4,497,260	-		HGI48_RS20120	0.56	-2.3
4,497,281	+		HGI48_RS20120	0.58	+0.6
4,497,419	+		HGI48_RS20120	0.68	-1.4
4,497,419	+		HGI48_RS20120	0.68	-0.4
4,497,419	+		HGI48_RS20120	0.68	-0.6
4,497,419	+		HGI48_RS20120	0.68	+0.1
4,497,420	-		HGI48_RS20120	0.68	-0.1
4,497,420	-				-0.7
4,497,420	-		HGI48_RS20120	0.68	+0.3
4,497,420	-		HGI48_RS20120	0.68	+0.7
4,497,420	-		HGI48_RS20120	0.68	+0.4
4,497,448	-		HGI48_RS20120	0.70	-2.3
4,497,551	-		HGI48_RS20120	0.78	-1.4
4,497,560	-		HGI48_RS20120	0.78	-1.7
4,497,560	-		HGI48_RS20120	0.78	+0.2
4,497,560	-		HGI48_RS20120	0.78	-0.2
4,497,857	+				+0.7
4,497,857	+				-0.7
4,497,870	+				+0.2
4,497,871	-				+0.8
4,497,877	+				-0.1
4,497,877	+				-0.4
4,497,877	+				-0.1
4,497,878	-				+0.4
4,497,878	-				-0.7
4,497,878	-				-0.1
4,497,878	-				+0.6
4,497,878	-				-0.2
4,497,933	+				+0.6
4,497,934	-				-0.1
4,497,934	-				-0.9
4,497,955	+				-1.6
4,497,955	+				+0.5
4,497,955	+				+0.1
4,497,955	+				-0.3
4,497,955	+				-0.9
4,497,955	+				+0.3
4,497,955	+				-1.0
4,497,956	-				-0.9
4,497,956	-				-1.1
4,497,956	-				-0.4
4,497,956	-				-0.8
4,497,956	-				-0.9
4,497,956	-				+0.9
4,497,956	-				+0.6
4,497,957	+				-0.3
4,497,958	-				-0.3
4,497,958	-				+1.2
4,497,972	+				+0.5
4,497,972	+				-0.7
4,497,977	+				-1.1
4,497,977	+				+0.4
4,497,977	+				+0.9
4,497,977	+				-0.4
4,497,977	+				-2.1
4,497,977	+				-0.7
4,497,977	+				+0.5
4,497,978	-				+0.1
4,497,978	-				+0.1
4,498,010	+				-0.8
4,498,030	+				-0.7
4,498,030	+				+0.4
4,498,091	+				-1.1
4,498,092	-				-0.7
4,498,109	+				+1.5
4,498,127	+				-1.1
4,498,127	+				+0.9
4,498,128	-				-0.9
4,498,128	-				+0.0
4,498,128	-				-1.1
4,498,128	-				+0.6
4,498,133	+				-0.4
4,498,133	+				+1.3
4,498,133	+				+0.4
4,498,133	+				-0.9
4,498,133	+				+0.4
4,498,133	+				-1.1
4,498,134	-				-0.0
4,498,134	-				-0.1
4,498,134	-				-0.7
4,498,146	-				+0.1
4,498,151	+				-0.4
4,498,151	+				-0.7
4,498,151	+				-2.1
4,498,151	+				-3.1
4,498,151	+				-0.0
4,498,151	+				-0.1
4,498,151	+				-0.7
4,498,151	+				-1.4
4,498,152	-				+0.1
4,498,152	-				-1.1
4,498,154	+				-1.4
4,498,155	-				+0.9
4,498,155	-				-0.2
4,498,155	-				-1.8
4,498,155	-				-0.6
4,498,163	+				-1.0
4,498,164	-				+0.6
4,498,213	-		HGI48_RS20125	0.18	+0.3
4,498,242	-		HGI48_RS20125	0.26	-0.4
4,498,335	-		HGI48_RS20125	0.54	+0.5
4,498,447	-		HGI48_RS20125	0.88	+0.9
4,498,448	+		HGI48_RS20125	0.88	+0.2
4,498,488	+				-0.4
4,498,488	+				+0.0
4,498,489	-				-1.1
4,498,489	-				+0.5
4,498,489	-				-2.1
4,498,502	+				-0.9
4,498,503	-				-0.1
4,498,503	-				-0.5
4,498,503	-				+0.6
4,498,503	-				-0.0
4,498,503	-				+0.7
4,498,521	-				-0.8
4,498,540	+				+0.9
4,498,540	+				+0.7
4,498,541	-				+0.2
4,498,541	-				-1.1
4,498,576	+				+1.9
4,498,577	-				+1.9
4,498,577	-				-0.4
4,498,577	-				-0.7
4,498,658	+				+0.3
4,498,693	+		HGI48_RS20130	0.12	-1.1
4,498,719	+		HGI48_RS20130	0.14	-0.3
4,498,720	-		HGI48_RS20130	0.14	-0.3
4,498,720	-		HGI48_RS20130	0.14	+0.5
4,498,720	-		HGI48_RS20130	0.14	-0.1
4,498,740	+		HGI48_RS20130	0.16	+0.6
4,498,740	+		HGI48_RS20130	0.16	-0.1
4,498,740	+		HGI48_RS20130	0.16	+0.2
4,498,741	-		HGI48_RS20130	0.16	-0.9
4,498,741	-		HGI48_RS20130	0.16	+0.1
4,498,741	-		HGI48_RS20130	0.16	+0.5
4,498,741	-		HGI48_RS20130	0.16	-0.2
4,498,752	+				+0.3
4,498,753	-		HGI48_RS20130	0.17	+1.1
4,498,815	+		HGI48_RS20130	0.23	-1.7
4,498,815	+		HGI48_RS20130	0.23	-0.3
4,498,815	+		HGI48_RS20130	0.23	-0.1
4,498,815	+		HGI48_RS20130	0.23	-0.6
4,498,815	+		HGI48_RS20130	0.23	-0.9
4,498,815	+		HGI48_RS20130	0.23	+0.1
4,498,815	+		HGI48_RS20130	0.23	-0.5
4,498,913	+		HGI48_RS20130	0.32	+0.9
4,498,913	+		HGI48_RS20130	0.32	+0.9
4,498,914	-		HGI48_RS20130	0.32	-1.5
4,498,941	-		HGI48_RS20130	0.35	+0.9
4,498,941	-		HGI48_RS20130	0.35	-0.3
4,499,019	+		HGI48_RS20130	0.42	-0.1
4,499,019	+		HGI48_RS20130	0.42	+0.9
4,499,020	-				+0.9
4,499,020	-		HGI48_RS20130	0.42	+0.0
4,499,020	-		HGI48_RS20130	0.42	+0.1
4,499,020	-		HGI48_RS20130	0.42	-1.8
4,499,052	+		HGI48_RS20130	0.45	+0.5
4,499,052	+		HGI48_RS20130	0.45	+0.9
4,499,052	+				+1.3
4,499,052	+		HGI48_RS20130	0.45	-2.3
4,499,052	+		HGI48_RS20130	0.45	-0.5
4,499,052	+		HGI48_RS20130	0.45	-2.6
4,499,053	-		HGI48_RS20130	0.45	-0.1
4,499,053	-		HGI48_RS20130	0.45	-0.5
4,499,053	-		HGI48_RS20130	0.45	-0.1
4,499,053	-		HGI48_RS20130	0.45	-1.9
4,499,053	-		HGI48_RS20130	0.45	-0.1
4,499,053	-		HGI48_RS20130	0.45	-0.9
4,499,095	+		HGI48_RS20130	0.49	-0.6
4,499,095	+				+0.9
4,499,095	+		HGI48_RS20130	0.49	+0.9
4,499,095	+		HGI48_RS20130	0.49	-0.5
4,499,096	-		HGI48_RS20130	0.49	-1.7
4,499,110	+		HGI48_RS20130	0.51	-0.1
4,499,111	-		HGI48_RS20130	0.51	-0.9
4,499,150	-				-0.7
4,499,211	+		HGI48_RS20130	0.60	-0.5
4,499,211	+		HGI48_RS20130	0.60	+0.1
4,499,211	+		HGI48_RS20130	0.60	+0.3
4,499,211	+		HGI48_RS20130	0.60	+0.4
4,499,215	-		HGI48_RS20130	0.60	-0.1
4,499,246	+		HGI48_RS20130	0.63	-2.1
4,499,246	+		HGI48_RS20130	0.63	-0.4
4,499,248	+		HGI48_RS20130	0.64	+2.4
4,499,249	-		HGI48_RS20130	0.64	+0.4
4,499,249	-		HGI48_RS20130	0.64	+0.1
4,499,249	-				-0.7
4,499,419	+		HGI48_RS20130	0.79	-1.2
4,499,419	+		HGI48_RS20130	0.79	+0.4
4,499,420	-		HGI48_RS20130	0.80	-0.4
4,499,420	-		HGI48_RS20130	0.80	-0.3
4,499,420	-		HGI48_RS20130	0.80	-0.7
4,499,420	-		HGI48_RS20130	0.80	+0.3
4,499,420	-		HGI48_RS20130	0.80	-0.1
4,499,426	+		HGI48_RS20130	0.80	+0.0
4,499,426	+		HGI48_RS20130	0.80	+1.3
4,499,426	+		HGI48_RS20130	0.80	+0.1
4,499,426	+				+0.3
4,499,426	+		HGI48_RS20130	0.80	-0.1
4,499,427	-		HGI48_RS20130	0.80	-0.3
4,499,427	-		HGI48_RS20130	0.80	-0.3
4,499,472	+		HGI48_RS20130	0.84	+3.2
4,499,473	-		HGI48_RS20130	0.84	-0.1
4,499,473	-		HGI48_RS20130	0.84	-1.0