Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20035 and HGI48_RS20040 are separated by 86 nucleotides HGI48_RS20040 and HGI48_RS20045 overlap by 1 nucleotides HGI48_RS20045 and HGI48_RS20050 overlap by 4 nucleotides HGI48_RS20050 and HGI48_RS20055 overlap by 4 nucleotides
HGI48_RS20035: HGI48_RS20035 - DNA helicase II, at 4,478,684 to 4,480,846
_RS20035
HGI48_RS20040: HGI48_RS20040 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,480,933 to 4,481,649
_RS20040
HGI48_RS20045: HGI48_RS20045 - tyrosine recombinase XerC, at 4,481,649 to 4,482,557
_RS20045
HGI48_RS20050: HGI48_RS20050 - DUF484 domain-containing protein, at 4,482,554 to 4,483,255
_RS20050
HGI48_RS20055: HGI48_RS20055 - diaminopimelate epimerase, at 4,483,252 to 4,484,076
_RS20055
Position (kb) 4481
4482
4483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4480.684 kb on - strand at 4480.767 kb on - strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.846 kb on + strand at 4480.846 kb on + strand at 4480.847 kb on - strand at 4480.912 kb on + strand at 4480.913 kb on - strand at 4480.913 kb on - strand at 4480.934 kb on + strand at 4480.934 kb on + strand at 4480.937 kb on - strand at 4480.972 kb on + strand at 4481.029 kb on - strand, within HGI48_RS20040 at 4481.044 kb on + strand, within HGI48_RS20040 at 4481.044 kb on + strand, within HGI48_RS20040 at 4481.116 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.145 kb on - strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand at 4481.149 kb on - strand at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.194 kb on - strand, within HGI48_RS20040 at 4481.194 kb on - strand, within HGI48_RS20040 at 4481.204 kb on + strand, within HGI48_RS20040 at 4481.204 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.444 kb on + strand, within HGI48_RS20040 at 4481.444 kb on + strand, within HGI48_RS20040 at 4481.445 kb on - strand, within HGI48_RS20040 at 4481.525 kb on + strand, within HGI48_RS20040 at 4481.525 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.581 kb on - strand at 4481.581 kb on - strand at 4481.620 kb on - strand at 4481.645 kb on + strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.657 kb on + strand at 4481.657 kb on + strand at 4481.658 kb on - strand at 4481.658 kb on - strand at 4481.658 kb on - strand at 4481.724 kb on - strand at 4481.726 kb on - strand at 4481.839 kb on - strand, within HGI48_RS20045 at 4481.890 kb on - strand, within HGI48_RS20045 at 4481.906 kb on + strand, within HGI48_RS20045 at 4481.907 kb on - strand, within HGI48_RS20045 at 4482.167 kb on + strand, within HGI48_RS20045 at 4482.463 kb on + strand, within HGI48_RS20045 at 4482.558 kb on - strand at 4482.558 kb on - strand at 4482.777 kb on + strand, within HGI48_RS20050 at 4482.778 kb on - strand, within HGI48_RS20050 at 4482.778 kb on - strand, within HGI48_RS20050 at 4482.778 kb on - strand, within HGI48_RS20050 at 4482.778 kb on - strand, within HGI48_RS20050 at 4482.805 kb on + strand, within HGI48_RS20050 at 4482.995 kb on + strand, within HGI48_RS20050 at 4482.995 kb on + strand, within HGI48_RS20050 at 4482.995 kb on + strand, within HGI48_RS20050 at 4482.996 kb on - strand, within HGI48_RS20050 at 4483.046 kb on + strand at 4483.046 kb on + strand, within HGI48_RS20050 at 4483.046 kb on + strand, within HGI48_RS20050 at 4483.046 kb on + strand, within HGI48_RS20050 at 4483.046 kb on + strand, within HGI48_RS20050 at 4483.047 kb on - strand, within HGI48_RS20050 at 4483.047 kb on - strand, within HGI48_RS20050 at 4483.047 kb on - strand, within HGI48_RS20050 at 4483.047 kb on - strand at 4483.047 kb on - strand, within HGI48_RS20050 at 4483.134 kb on - strand, within HGI48_RS20050 at 4483.194 kb on + strand at 4483.194 kb on + strand at 4483.195 kb on - strand at 4483.195 kb on - strand at 4483.255 kb on + strand at 4483.263 kb on + strand at 4483.264 kb on - strand at 4483.264 kb on - strand at 4483.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,480,684 - +2.3 4,480,767 - -0.1 4,480,838 + -1.0 4,480,838 + -0.1 4,480,838 + +1.8 4,480,838 + -1.9 4,480,838 + -1.1 4,480,838 + -1.7 4,480,839 - +0.3 4,480,839 - -0.7 4,480,839 - -1.1 4,480,839 - -1.4 4,480,839 - +0.2 4,480,846 + -0.8 4,480,846 + -0.8 4,480,847 - +0.4 4,480,912 + -0.1 4,480,913 - -0.1 4,480,913 - -0.5 4,480,934 + +1.7 4,480,934 + -1.1 4,480,937 - -1.5 4,480,972 + -1.3 4,481,029 - HGI48_RS20040 0.13 -0.3 4,481,044 + HGI48_RS20040 0.15 -1.5 4,481,044 + HGI48_RS20040 0.15 +0.3 4,481,116 + HGI48_RS20040 0.26 +1.0 4,481,144 + HGI48_RS20040 0.29 +1.1 4,481,144 + HGI48_RS20040 0.29 -2.1 4,481,144 + HGI48_RS20040 0.29 +0.9 4,481,144 + HGI48_RS20040 0.29 -0.6 4,481,145 - HGI48_RS20040 0.30 -1.1 4,481,148 + HGI48_RS20040 0.30 -2.5 4,481,148 + HGI48_RS20040 0.30 -0.2 4,481,148 + HGI48_RS20040 0.30 -1.1 4,481,148 + HGI48_RS20040 0.30 -0.3 4,481,148 + -0.1 4,481,148 + HGI48_RS20040 0.30 +0.3 4,481,148 + HGI48_RS20040 0.30 -0.4 4,481,148 + HGI48_RS20040 0.30 -0.0 4,481,148 + HGI48_RS20040 0.30 +0.6 4,481,148 + HGI48_RS20040 0.30 -0.4 4,481,148 + HGI48_RS20040 0.30 -0.3 4,481,148 + HGI48_RS20040 0.30 +0.1 4,481,148 + HGI48_RS20040 0.30 -0.9 4,481,148 + HGI48_RS20040 0.30 -0.5 4,481,148 + HGI48_RS20040 0.30 +0.9 4,481,148 + HGI48_RS20040 0.30 +0.6 4,481,148 + HGI48_RS20040 0.30 -0.6 4,481,148 + HGI48_RS20040 0.30 -0.1 4,481,149 - HGI48_RS20040 0.30 -0.2 4,481,149 - HGI48_RS20040 0.30 -1.6 4,481,149 - HGI48_RS20040 0.30 +1.0 4,481,149 - +0.9 4,481,149 - HGI48_RS20040 0.30 -0.1 4,481,149 - -0.7 4,481,149 - +0.9 4,481,149 - HGI48_RS20040 0.30 -0.6 4,481,149 - HGI48_RS20040 0.30 +0.3 4,481,149 - HGI48_RS20040 0.30 -0.0 4,481,194 - HGI48_RS20040 0.36 +2.0 4,481,194 - HGI48_RS20040 0.36 -1.1 4,481,204 + HGI48_RS20040 0.38 -1.1 4,481,204 + HGI48_RS20040 0.38 +0.9 4,481,410 + HGI48_RS20040 0.67 -0.1 4,481,410 + HGI48_RS20040 0.67 -1.1 4,481,410 + HGI48_RS20040 0.67 -0.1 4,481,410 + HGI48_RS20040 0.67 -0.1 4,481,411 - HGI48_RS20040 0.67 +1.1 4,481,411 - HGI48_RS20040 0.67 -1.6 4,481,411 - HGI48_RS20040 0.67 +0.9 4,481,411 - HGI48_RS20040 0.67 -0.9 4,481,411 - HGI48_RS20040 0.67 -0.2 4,481,411 - HGI48_RS20040 0.67 -1.7 4,481,411 - HGI48_RS20040 0.67 +1.7 4,481,444 + HGI48_RS20040 0.71 -0.5 4,481,444 + HGI48_RS20040 0.71 -1.7 4,481,445 - HGI48_RS20040 0.71 -2.1 4,481,525 + HGI48_RS20040 0.83 -0.6 4,481,525 + HGI48_RS20040 0.83 -1.5 4,481,576 + HGI48_RS20040 0.90 +0.1 4,481,576 + HGI48_RS20040 0.90 -0.5 4,481,576 + -0.7 4,481,576 + HGI48_RS20040 0.90 +0.3 4,481,576 + HGI48_RS20040 0.90 -2.1 4,481,576 + +1.9 4,481,577 - HGI48_RS20040 0.90 +0.7 4,481,577 - HGI48_RS20040 0.90 -0.7 4,481,577 - HGI48_RS20040 0.90 +0.4 4,481,577 - HGI48_RS20040 0.90 -0.5 4,481,577 - HGI48_RS20040 0.90 -0.3 4,481,577 - HGI48_RS20040 0.90 +2.2 4,481,581 - +0.2 4,481,581 - +0.1 4,481,620 - +0.0 4,481,645 + -0.1 4,481,646 - -0.7 4,481,646 - -1.1 4,481,646 - -0.4 4,481,646 - +0.4 4,481,646 - +0.5 4,481,646 - -0.1 4,481,646 - +0.1 4,481,657 + -0.9 4,481,657 + -1.5 4,481,658 - +0.3 4,481,658 - -1.3 4,481,658 - +0.4 4,481,724 - -0.7 4,481,726 - -1.7 4,481,839 - HGI48_RS20045 0.21 -2.3 4,481,890 - HGI48_RS20045 0.27 -0.7 4,481,906 + HGI48_RS20045 0.28 -1.0 4,481,907 - HGI48_RS20045 0.28 -3.4 4,482,167 + HGI48_RS20045 0.57 -2.3 4,482,463 + HGI48_RS20045 0.90 +0.1 4,482,558 - -0.4 4,482,558 - -0.1 4,482,777 + HGI48_RS20050 0.32 -2.5 4,482,778 - HGI48_RS20050 0.32 -1.7 4,482,778 - HGI48_RS20050 0.32 -1.3 4,482,778 - HGI48_RS20050 0.32 -0.4 4,482,778 - HGI48_RS20050 0.32 -0.9 4,482,805 + HGI48_RS20050 0.36 -2.1 4,482,995 + HGI48_RS20050 0.63 -0.4 4,482,995 + HGI48_RS20050 0.63 -1.5 4,482,995 + HGI48_RS20050 0.63 -0.9 4,482,996 - HGI48_RS20050 0.63 -1.1 4,483,046 + -0.1 4,483,046 + HGI48_RS20050 0.70 -1.5 4,483,046 + HGI48_RS20050 0.70 -1.5 4,483,046 + HGI48_RS20050 0.70 -0.0 4,483,046 + HGI48_RS20050 0.70 -1.3 4,483,047 - HGI48_RS20050 0.70 +0.1 4,483,047 - HGI48_RS20050 0.70 -1.9 4,483,047 - HGI48_RS20050 0.70 -0.2 4,483,047 - -0.1 4,483,047 - HGI48_RS20050 0.70 -0.1 4,483,134 - HGI48_RS20050 0.83 -0.5 4,483,194 + -0.7 4,483,194 + -0.1 4,483,195 - +1.9 4,483,195 - -0.7 4,483,255 + -0.7 4,483,263 + -1.5 4,483,264 - -1.5 4,483,264 - +0.1 4,483,264 - +0.1
Or see this region's nucleotide sequence