Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19940

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,456,172	-		HGI48_RS19930	0.20	-0.1
4,456,172	-		HGI48_RS19930	0.20	-0.7
4,456,186	-		HGI48_RS19930	0.23	-2.5
4,456,205	+		HGI48_RS19930	0.26	-1.5
4,456,264	+		HGI48_RS19930	0.37	-0.4
4,456,287	+		HGI48_RS19930	0.41	-2.8
4,456,315	-		HGI48_RS19930	0.46	-0.2
4,456,315	-				+0.9
4,456,335	+		HGI48_RS19930	0.50	+0.4
4,456,353	+		HGI48_RS19930	0.53	-0.1
4,456,357	-		HGI48_RS19930	0.54	-1.5
4,456,360	-				+1.9
4,456,378	+		HGI48_RS19930	0.58	+0.0
4,456,381	+		HGI48_RS19930	0.59	-1.6
4,456,468	-				+0.3
4,456,468	-		HGI48_RS19930	0.75	+0.1
4,456,507	+		HGI48_RS19930	0.82	-0.1
4,456,508	-		HGI48_RS19930	0.82	-2.1
4,456,550	-		HGI48_RS19930	0.90	-0.6
4,456,609	-				-0.5
4,456,655	+		HGI48_RS19935	0.16	-1.7
4,456,655	+		HGI48_RS19935	0.16	-0.1
4,456,659	-		HGI48_RS19935	0.17	-0.6
4,456,659	-		HGI48_RS19935	0.17	+0.6
4,456,659	-		HGI48_RS19935	0.17	-0.1
4,456,695	-		HGI48_RS19935	0.23	+0.9
4,456,825	+		HGI48_RS19935	0.46	-1.1
4,456,825	+		HGI48_RS19935	0.46	-0.2
4,456,826	-		HGI48_RS19935	0.46	+0.6
4,456,826	-		HGI48_RS19935	0.46	-0.5
4,456,826	-				+0.9
4,456,857	-		HGI48_RS19935	0.51	-0.5
4,456,861	+		HGI48_RS19935	0.52	-0.1
4,456,861	+		HGI48_RS19935	0.52	-0.1
4,456,863	+		HGI48_RS19935	0.52	-1.0
4,456,863	+		HGI48_RS19935	0.52	+0.9
4,456,864	-		HGI48_RS19935	0.52	+0.0
4,456,864	-		HGI48_RS19935	0.52	-1.4
4,456,869	-		HGI48_RS19935	0.53	-0.7
4,456,909	+		HGI48_RS19935	0.60	+0.7
4,456,909	+		HGI48_RS19935	0.60	+0.4
4,456,916	+		HGI48_RS19935	0.61	-1.4
4,456,916	+		HGI48_RS19935	0.61	-0.1
4,456,917	-		HGI48_RS19935	0.62	+0.1
4,456,952	+		HGI48_RS19935	0.68	+0.4
4,456,952	+		HGI48_RS19935	0.68	-0.6
4,456,953	-		HGI48_RS19935	0.68	-1.1
4,456,953	-		HGI48_RS19935	0.68	-2.6
4,456,953	-				-0.7
4,456,953	-		HGI48_RS19935	0.68	-1.4
4,456,953	-		HGI48_RS19935	0.68	-0.1
4,456,958	+		HGI48_RS19935	0.69	+0.2
4,456,958	+				+2.2
4,456,958	+		HGI48_RS19935	0.69	-1.9
4,456,958	+		HGI48_RS19935	0.69	+0.0
4,456,958	+		HGI48_RS19935	0.69	-1.1
4,456,959	-		HGI48_RS19935	0.69	+0.2
4,456,959	-		HGI48_RS19935	0.69	-1.0
4,457,036	-		HGI48_RS19935	0.82	-1.5
4,457,058	-		HGI48_RS19935	0.86	-0.4
4,457,100	+				+1.3
4,457,122	-				+0.9
4,457,132	+				-1.5
4,457,164	+				-0.6
4,457,164	+				+0.2
4,457,164	+				-0.7
4,457,165	-				-2.1
4,457,165	-				+1.0
4,457,165	-				-0.9
4,457,169	-				+0.3
4,457,169	-				-0.7
4,457,220	+				+0.4
4,457,220	+				-1.1
4,457,220	+				-2.5
4,457,220	+				-1.0
4,457,221	-				-2.3
4,457,255	+		HGI48_RS19940	0.12	-0.6
4,457,255	+		HGI48_RS19940	0.12	+1.9
4,457,255	+		HGI48_RS19940	0.12	-0.9
4,457,256	-		HGI48_RS19940	0.13	-0.5
4,457,256	-		HGI48_RS19940	0.13	-0.5
4,457,266	+		HGI48_RS19940	0.14	-1.1
4,457,266	+		HGI48_RS19940	0.14	-2.0
4,457,266	+				-0.1
4,457,267	-		HGI48_RS19940	0.14	-1.1
4,457,286	-				-0.7
4,457,322	-		HGI48_RS19940	0.20	-1.9
4,457,322	-		HGI48_RS19940	0.20	-1.7
4,457,322	-		HGI48_RS19940	0.20	+1.2
4,457,322	-		HGI48_RS19940	0.20	-0.7
4,457,323	+		HGI48_RS19940	0.20	-3.7
4,457,323	+		HGI48_RS19940	0.20	-1.1
4,457,323	+		HGI48_RS19940	0.20	+0.1
4,457,324	-		HGI48_RS19940	0.20	+0.4
4,457,354	+		HGI48_RS19940	0.24	-2.7
4,457,364	+		HGI48_RS19940	0.25	-1.7
4,457,500	-		HGI48_RS19940	0.41	-1.7
4,457,533	+		HGI48_RS19940	0.45	-1.8
4,457,533	+		HGI48_RS19940	0.45	-1.1
4,457,534	-		HGI48_RS19940	0.45	-0.3
4,457,534	-		HGI48_RS19940	0.45	+1.2
4,457,534	-		HGI48_RS19940	0.45	-1.5
4,457,543	+		HGI48_RS19940	0.46	-0.1
4,457,543	+		HGI48_RS19940	0.46	-1.1
4,457,543	+				-0.7
4,457,543	+		HGI48_RS19940	0.46	-0.6
4,457,544	-		HGI48_RS19940	0.46	+0.3
4,457,544	-				+0.3
4,457,544	-		HGI48_RS19940	0.46	+0.9
4,457,569	+		HGI48_RS19940	0.49	-0.7
4,457,570	-		HGI48_RS19940	0.49	-1.4
4,457,570	-		HGI48_RS19940	0.49	+0.9
4,457,570	-		HGI48_RS19940	0.49	-1.1
4,457,570	-		HGI48_RS19940	0.49	-0.6
4,457,570	-		HGI48_RS19940	0.49	-1.7
4,457,588	+		HGI48_RS19940	0.51	-1.3
4,457,588	+		HGI48_RS19940	0.51	-1.0
4,457,588	+		HGI48_RS19940	0.51	-1.1
4,457,588	+				-0.7
4,457,589	-		HGI48_RS19940	0.51	-0.7
4,457,589	-		HGI48_RS19940	0.51	-0.5
4,457,589	-		HGI48_RS19940	0.51	-1.9
4,457,589	-		HGI48_RS19940	0.51	-1.8
4,457,589	-		HGI48_RS19940	0.51	-0.5
4,457,590	+		HGI48_RS19940	0.51	+0.4
4,457,590	+		HGI48_RS19940	0.51	-2.1
4,457,590	+				-0.7
4,457,590	+		HGI48_RS19940	0.51	+0.3
4,457,590	+		HGI48_RS19940	0.51	-1.5
4,457,590	+		HGI48_RS19940	0.51	-1.4
4,457,590	+				+1.3
4,457,590	+				+1.9
4,457,591	-		HGI48_RS19940	0.51	-1.0
4,457,591	-		HGI48_RS19940	0.51	-0.5
4,457,591	-		HGI48_RS19940	0.51	-0.9
4,457,591	-		HGI48_RS19940	0.51	-0.7
4,457,591	-		HGI48_RS19940	0.51	-1.3
4,457,591	-		HGI48_RS19940	0.51	-2.8
4,457,591	-		HGI48_RS19940	0.51	-0.1
4,457,591	-		HGI48_RS19940	0.51	-1.7
4,457,591	-		HGI48_RS19940	0.51	-0.3
4,457,601	+		HGI48_RS19940	0.53	-0.9
4,457,602	-				+0.3
4,457,602	-		HGI48_RS19940	0.53	-3.3
4,457,635	-		HGI48_RS19940	0.56	-1.3
4,457,699	+		HGI48_RS19940	0.64	+1.3
4,457,699	+		HGI48_RS19940	0.64	-2.5
4,457,699	+		HGI48_RS19940	0.64	-1.5
4,457,699	+		HGI48_RS19940	0.64	-0.9
4,457,700	-		HGI48_RS19940	0.64	-0.6
4,457,707	+		HGI48_RS19940	0.65	+0.4
4,457,711	+		HGI48_RS19940	0.65	-0.1
4,457,711	+		HGI48_RS19940	0.65	-0.1
4,457,711	+		HGI48_RS19940	0.65	-1.5
4,457,712	-		HGI48_RS19940	0.65	-0.4
4,457,712	-		HGI48_RS19940	0.65	-2.5
4,457,712	-				-0.7
4,457,712	-		HGI48_RS19940	0.65	-1.9
4,457,746	+		HGI48_RS19940	0.69	-0.5
4,457,746	+		HGI48_RS19940	0.69	-1.1
4,457,746	+		HGI48_RS19940	0.69	-1.1
4,457,747	-		HGI48_RS19940	0.69	-0.7
4,457,747	-		HGI48_RS19940	0.69	-0.5
4,457,773	+		HGI48_RS19940	0.72	-2.6
4,457,773	+		HGI48_RS19940	0.72	-1.5
4,457,774	-		HGI48_RS19940	0.73	-1.9
4,457,820	-		HGI48_RS19940	0.78	-3.2
4,457,820	-		HGI48_RS19940	0.78	-1.5
4,457,878	+		HGI48_RS19940	0.85	-1.9
4,457,891	+		HGI48_RS19940	0.86	-0.1
4,457,891	+		HGI48_RS19940	0.86	-0.6
4,457,892	-		HGI48_RS19940	0.86	-0.1
4,457,892	-		HGI48_RS19940	0.86	-0.1
4,457,892	-		HGI48_RS19940	0.86	-2.5
4,457,910	-				-0.7
4,458,011	+				-0.4
4,458,029	+				-1.5
4,458,029	+				-1.3
4,458,031	+				+0.1
4,458,031	+				+0.1
4,458,031	+				+0.5
4,458,031	+				-0.1
4,458,032	-				-0.7
4,458,032	-				-0.3
4,458,032	-				-0.6
4,458,065	+				+1.9
4,458,065	+				+0.5
4,458,066	-				-1.1
4,458,076	+				-0.5
4,458,076	+				-0.9
4,458,076	+				-0.9
4,458,108	+				-1.6
4,458,109	-				+1.9
4,458,109	-				+0.1
4,458,157	-				-1.1
4,458,180	+				-0.9
4,458,181	-				-1.1
4,458,183	+				+0.9
4,458,211	-				+0.9
4,458,239	+				+0.4
4,458,253	-				+0.9
4,458,256	-				+0.6
4,458,278	-				-0.1
4,458,278	-				+0.4
4,458,285	-				+2.1
4,458,306	-				-0.8
4,458,306	-				+0.8
4,458,306	-				-0.6
4,458,306	-				-0.5
4,458,306	-				+0.9
4,458,335	+				-0.0
4,458,336	-				-0.1
4,458,348	+				-1.7
4,458,348	+				-0.3
4,458,348	+				+0.5
4,458,349	-				+1.2
4,458,349	-				-0.1
4,458,349	-				+0.1
4,458,381	-				+0.2
4,458,393	+				+2.9
4,458,393	+				-0.7
4,458,393	+				-1.6
4,458,393	+				-0.3
4,458,394	-				-0.8
4,458,394	-				-0.1
4,458,397	+				+1.2
4,458,397	+				+1.2
4,458,398	-				+1.9
4,458,398	-				-1.3
4,458,398	-				-0.6
4,458,458	+				+0.3
4,458,458	+				-0.1
4,458,459	-				-1.1
4,458,461	+				-0.1
4,458,462	-				-0.5
4,458,505	+				+1.6
4,458,515	-				-0.5
4,458,559	+				+0.9
4,458,559	+				-0.4
4,458,559	+				+0.1
4,458,560	-				+1.2
4,458,563	-				-0.7
4,458,563	-				+0.4
4,458,579	+				+0.2
4,458,580	-				+0.6
4,458,580	-				-1.7
4,458,580	-				-0.1
4,458,582	+				-1.9
4,458,583	-				-1.5
4,458,583	-				+0.1
4,458,592	-				-0.6
4,458,610	+				-0.7
4,458,610	+				-0.4
4,458,610	+				+2.4
4,458,611	-				-0.6
4,458,611	-				+0.9
4,458,612	+				-0.4
4,458,708	-				+1.4
4,458,732	+		HGI48_RS19945	0.19	+1.7
4,458,732	+		HGI48_RS19945	0.19	-1.5
4,458,733	-		HGI48_RS19945	0.19	+0.1
4,458,738	+		HGI48_RS19945	0.19	+1.4
4,458,739	-		HGI48_RS19945	0.19	-1.5
4,458,739	-		HGI48_RS19945	0.19	-1.1
4,458,739	-		HGI48_RS19945	0.19	-0.5
4,458,753	+		HGI48_RS19945	0.21	-1.1
4,458,753	+		HGI48_RS19945	0.21	-0.2
4,458,753	+		HGI48_RS19945	0.21	+0.1
4,458,753	+		HGI48_RS19945	0.21	-0.3
4,458,753	+		HGI48_RS19945	0.21	+0.9
4,458,753	+		HGI48_RS19945	0.21	+0.8
4,458,754	-		HGI48_RS19945	0.21	-1.0
4,458,757	+		HGI48_RS19945	0.22	-0.9
4,458,757	+				+1.9
4,458,757	+		HGI48_RS19945	0.22	-0.3
4,458,766	+		HGI48_RS19945	0.23	-0.0
4,458,766	+		HGI48_RS19945	0.23	-1.9
4,458,766	+		HGI48_RS19945	0.23	-0.0
4,458,767	-		HGI48_RS19945	0.23	+1.0
4,458,767	-		HGI48_RS19945	0.23	+1.3
4,458,767	-		HGI48_RS19945	0.23	-0.1
4,458,767	-		HGI48_RS19945	0.23	+1.2
4,458,767	-		HGI48_RS19945	0.23	-0.6
4,458,768	+		HGI48_RS19945	0.23	-0.0
4,458,768	+		HGI48_RS19945	0.23	+0.9
4,458,768	+		HGI48_RS19945	0.23	-0.9
4,458,768	+		HGI48_RS19945	0.23	-1.0
4,458,769	-		HGI48_RS19945	0.23	-0.4
4,458,769	-				-0.1
4,458,769	-		HGI48_RS19945	0.23	-2.1
4,458,769	-		HGI48_RS19945	0.23	+0.6
4,458,769	-		HGI48_RS19945	0.23	-0.9
4,458,769	-		HGI48_RS19945	0.23	-1.5
4,458,844	-		HGI48_RS19945	0.32	+0.5
4,458,844	-		HGI48_RS19945	0.32	-0.6
4,458,844	-				+0.3
4,458,891	+		HGI48_RS19945	0.38	-0.0
4,458,902	+		HGI48_RS19945	0.40	+1.0
4,458,970	+		HGI48_RS19945	0.48	-0.9
4,458,970	+		HGI48_RS19945	0.48	+0.1
4,458,970	+		HGI48_RS19945	0.48	+0.1
4,458,970	+		HGI48_RS19945	0.48	-1.1
4,458,970	+		HGI48_RS19945	0.48	-0.4
4,458,970	+		HGI48_RS19945	0.48	-0.7
4,458,970	+		HGI48_RS19945	0.48	-1.8
4,458,970	+		HGI48_RS19945	0.48	-0.3
4,458,970	+				+2.3
4,458,970	+		HGI48_RS19945	0.48	-0.6
4,458,970	+		HGI48_RS19945	0.48	-2.3
4,458,970	+				+1.9
4,458,970	+		HGI48_RS19945	0.48	-2.3
4,458,971	-		HGI48_RS19945	0.48	+1.2
4,458,971	-		HGI48_RS19945	0.48	-0.3
4,458,971	-		HGI48_RS19945	0.48	+0.5
4,458,971	-				+0.9
4,458,971	-		HGI48_RS19945	0.48	-0.2
4,458,971	-		HGI48_RS19945	0.48	-0.1
4,458,971	-		HGI48_RS19945	0.48	-1.7
4,458,971	-		HGI48_RS19945	0.48	-0.6
4,458,971	-		HGI48_RS19945	0.48	-1.1
4,458,971	-		HGI48_RS19945	0.48	-0.1
4,458,971	-		HGI48_RS19945	0.48	-0.6
4,458,971	-		HGI48_RS19945	0.48	+0.3
4,458,971	-		HGI48_RS19945	0.48	-1.3
4,458,971	-		HGI48_RS19945	0.48	-0.1
4,458,971	-		HGI48_RS19945	0.48	+0.1
4,458,971	-		HGI48_RS19945	0.48	-1.1
4,458,971	-		HGI48_RS19945	0.48	+0.9
4,458,972	+				+1.3
4,458,972	+		HGI48_RS19945	0.48	+0.4
4,458,972	+		HGI48_RS19945	0.48	-0.1
4,458,972	+		HGI48_RS19945	0.48	-2.1
4,458,972	+				+0.3
4,458,973	-				-0.1
4,459,003	-		HGI48_RS19945	0.52	-0.2