Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19720

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,401,412	+				-0.0
4,401,596	+		HGI48_RS19715	0.34	-0.5
4,401,718	-		HGI48_RS19715	0.56	-0.7
4,401,746	-		HGI48_RS19715	0.61	-0.4
4,401,746	-		HGI48_RS19715	0.61	-0.4
4,401,839	+		HGI48_RS19715	0.78	-0.5
4,401,839	+		HGI48_RS19715	0.78	-0.3
4,401,839	+				+0.3
4,401,840	-		HGI48_RS19715	0.78	-0.2
4,401,870	-		HGI48_RS19715	0.83	-0.7
4,401,870	-		HGI48_RS19715	0.83	-1.1
4,401,953	+				-0.7
4,401,953	+				-0.2
4,401,954	-				+0.0
4,401,954	-				-1.2
4,401,956	+				+0.1
4,401,956	+				+1.0
4,401,956	+				+0.3
4,401,972	+				+0.6
4,401,974	+				-0.7
4,401,974	+				+1.2
4,401,974	+				-0.3
4,401,975	-				+1.1
4,402,035	+				+0.6
4,402,035	+				+0.4
4,402,058	+				+1.3
4,402,058	+				+1.3
4,402,059	-				-0.4
4,402,059	-				+0.0
4,402,088	+				+0.8
4,402,107	-				+0.3
4,402,120	+				+0.2
4,402,121	-				-1.2
4,402,121	-				-0.5
4,402,167	+				-0.2
4,402,168	-				-0.2
4,402,174	+				-0.7
4,402,175	-				+0.6
4,402,175	-				+0.1
4,402,199	+				+0.5
4,402,249	-				-0.0
4,402,254	-				+0.7
4,402,254	-				-0.2
4,402,254	-				-0.3
4,402,254	-				+1.3
4,402,269	+				-0.2
4,402,270	-				-0.2
4,402,270	-				-1.2
4,402,293	-				-0.2
4,402,301	+				+0.8
4,402,302	-				-0.9
4,402,325	-				+0.3
4,402,346	+				+0.1
4,402,349	+				+0.5
4,402,362	-				-0.2
4,402,379	+				-0.2
4,402,382	+				+1.8
4,402,382	+				-1.4
4,402,382	+				+0.2
4,402,382	+				-0.5
4,402,382	+				-1.7
4,402,383	-				-3.1
4,402,393	+				-0.3
4,402,393	+				+0.8
4,402,393	+				+0.8
4,402,393	+				-2.0
4,402,393	+				+0.3
4,402,393	+				+0.3
4,402,393	+				-0.2
4,402,393	+				+0.4
4,402,393	+				-1.0
4,402,394	-				-2.3
4,402,397	+				-0.5
4,402,397	+				+0.8
4,402,397	+				+0.5
4,402,411	+				+0.8
4,402,452	+				+0.3
4,402,452	+				-0.5
4,402,462	-				-2.6
4,402,474	+				+1.1
4,402,497	-				-0.3
4,402,535	+				-0.7
4,402,535	+				-1.5
4,402,535	+				-0.6
4,402,535	+				-0.2
4,402,711	-		HGI48_RS19720	0.15	-1.3
4,402,755	+				-0.7
4,402,756	-				+0.9
4,403,269	-				-0.1
4,403,310	+		HGI48_RS19720	0.44	-2.1
4,403,344	-		HGI48_RS19720	0.45	-1.7
4,403,540	+		HGI48_RS19720	0.54	-1.4
4,403,592	+				-0.7
4,403,592	+		HGI48_RS19720	0.57	-3.0
4,404,054	+		HGI48_RS19720	0.78	-0.7
4,404,456	+				+0.2
4,404,456	+				-0.7
4,404,456	+				-0.4
4,404,456	+				-1.5
4,404,504	+				+0.3
4,404,504	+				+0.9
4,404,504	+				+0.0
4,404,504	+				+0.9
4,404,505	-				-0.3
4,404,505	-				-0.5
4,404,505	-				+0.9
4,404,513	+				-1.1
4,404,513	+				-0.1
4,404,514	-				-0.1
4,404,514	-				+0.7
4,404,514	-				-0.7
4,404,514	-				-1.1
4,404,514	-				+0.1
4,404,514	-				-0.7
4,404,514	-				-0.9
4,404,514	-				-0.0
4,404,514	-				+0.7
4,404,515	+				-0.7
4,404,515	+				-0.5
4,404,515	+				+0.1
4,404,515	+				-1.0
4,404,515	+				-0.1
4,404,516	-				+0.9
4,404,516	-				-0.6
4,404,516	-				-0.4
4,404,516	-				+1.4
4,404,516	-				-1.1
4,404,568	+				-0.6
4,404,569	-				+0.9
4,404,569	-				-0.1
4,404,569	-				+0.4
4,404,569	-				+0.9
4,404,569	-				+0.1
4,404,574	-				-0.7
4,404,641	+				-0.4
4,404,641	+				+0.7
4,404,641	+				-0.5
4,404,642	-				+0.2
4,404,642	-				+0.5
4,404,692	+				+0.9
4,404,692	+				-1.0
4,404,692	+				-0.6
4,404,692	+				+0.8
4,404,692	+				-0.4
4,404,692	+				-1.0
4,404,692	+				-0.1
4,404,692	+				+1.7
4,404,693	-				+1.4
4,404,693	-				+0.3
4,404,693	-				-0.2
4,404,693	-				-0.6
4,404,693	-				-0.1
4,404,693	-				-0.1
4,404,693	-				+0.9
4,404,693	-				-0.6
4,404,793	+		HGI48_RS19725	0.12	-1.7
4,404,794	-		HGI48_RS19725	0.12	+0.5
4,404,794	-				-0.1
4,404,794	-		HGI48_RS19725	0.12	-0.6
4,404,837	+		HGI48_RS19725	0.18	+1.3
4,404,838	-		HGI48_RS19725	0.18	-1.7
4,404,838	-		HGI48_RS19725	0.18	+2.0
4,404,838	-		HGI48_RS19725	0.18	-0.1
4,404,840	+		HGI48_RS19725	0.19	-0.5
4,404,840	+		HGI48_RS19725	0.19	+0.0
4,404,840	+		HGI48_RS19725	0.19	+0.1
4,404,841	-		HGI48_RS19725	0.19	+0.2
4,404,841	-		HGI48_RS19725	0.19	-0.7
4,404,881	-				+0.9
4,404,911	-		HGI48_RS19725	0.29	+0.9
4,404,922	+		HGI48_RS19725	0.30	-0.0
4,404,923	-		HGI48_RS19725	0.30	+0.0
4,404,953	-		HGI48_RS19725	0.35	-1.3
4,405,044	+		HGI48_RS19725	0.48	-2.0
4,405,044	+				+1.4
4,405,045	-		HGI48_RS19725	0.48	+0.2
4,405,121	+		HGI48_RS19725	0.58	+0.4
4,405,137	+				+1.4
4,405,137	+		HGI48_RS19725	0.61	-0.9
4,405,137	+		HGI48_RS19725	0.61	-0.9
4,405,138	-		HGI48_RS19725	0.61	-0.4
4,405,138	-		HGI48_RS19725	0.61	+0.4
4,405,138	-		HGI48_RS19725	0.61	-1.7
4,405,138	-		HGI48_RS19725	0.61	-1.7
4,405,138	-		HGI48_RS19725	0.61	-1.5
4,405,138	-		HGI48_RS19725	0.61	-0.6
4,405,138	-		HGI48_RS19725	0.61	-0.7
4,405,141	+		HGI48_RS19725	0.61	-0.9
4,405,141	+		HGI48_RS19725	0.61	+0.5
4,405,141	+		HGI48_RS19725	0.61	+0.4
4,405,141	+		HGI48_RS19725	0.61	+0.6
4,405,141	+		HGI48_RS19725	0.61	-0.9
4,405,142	-		HGI48_RS19725	0.61	+0.9
4,405,142	-		HGI48_RS19725	0.61	-0.2
4,405,142	-		HGI48_RS19725	0.61	-0.4
4,405,142	-		HGI48_RS19725	0.61	+0.1
4,405,142	-		HGI48_RS19725	0.61	+0.9
4,405,142	-		HGI48_RS19725	0.61	+1.1
4,405,142	-		HGI48_RS19725	0.61	+0.5
4,405,142	-		HGI48_RS19725	0.61	-0.1
4,405,142	-		HGI48_RS19725	0.61	+1.2
4,405,142	-		HGI48_RS19725	0.61	-1.1
4,405,213	-				+2.4
4,405,352	-				-1.5
4,405,405	+				-2.5
4,405,405	+				-0.6
4,405,405	+				-1.1
4,405,405	+				-0.3
4,405,406	-				+0.0
4,405,406	-				+2.2
4,405,406	-				+1.3