Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19670 and HGI48_RS19675 are separated by 135 nucleotides HGI48_RS19675 and HGI48_RS19680 are separated by 52 nucleotides
HGI48_RS19670: HGI48_RS19670 - SPOR domain-containing protein, at 4,391,601 to 4,392,653
_RS19670
HGI48_RS19675: HGI48_RS19675 - 3-dehydroquinate synthase, at 4,392,789 to 4,393,874
_RS19675
HGI48_RS19680: HGI48_RS19680 - shikimate kinase AroK, at 4,393,927 to 4,394,448
_RS19680
Position (kb) 4392
4393
4394 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4391.801 kb on - strand at 4391.801 kb on - strand, within HGI48_RS19670 at 4391.801 kb on - strand at 4391.832 kb on - strand, within HGI48_RS19670 at 4391.847 kb on - strand, within HGI48_RS19670 at 4391.961 kb on - strand at 4391.976 kb on - strand, within HGI48_RS19670 at 4392.393 kb on - strand, within HGI48_RS19670 at 4392.393 kb on - strand, within HGI48_RS19670 at 4392.453 kb on - strand, within HGI48_RS19670 at 4392.677 kb on - strand at 4394.482 kb on - strand at 4394.499 kb on - strand at 4394.499 kb on - strand at 4394.516 kb on - strand at 4394.516 kb on - strand at 4394.516 kb on - strand at 4394.538 kb on - strand at 4394.645 kb on + strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.666 kb on + strand at 4394.667 kb on - strand at 4394.667 kb on - strand at 4394.708 kb on + strand at 4394.708 kb on + strand at 4394.717 kb on + strand at 4394.718 kb on - strand at 4394.719 kb on + strand at 4394.720 kb on - strand at 4394.732 kb on + strand at 4394.732 kb on + strand at 4394.732 kb on + strand at 4394.733 kb on - strand at 4394.733 kb on - strand at 4394.733 kb on - strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.771 kb on + strand at 4394.805 kb on + strand at 4394.805 kb on + strand at 4394.805 kb on + strand at 4394.806 kb on - strand at 4394.806 kb on - strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.840 kb on + strand at 4394.850 kb on + strand at 4394.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,391,801 - -0.7 4,391,801 - HGI48_RS19670 0.19 +0.3 4,391,801 - +0.8 4,391,832 - HGI48_RS19670 0.22 -0.1 4,391,847 - HGI48_RS19670 0.23 -1.2 4,391,961 - +2.8 4,391,976 - HGI48_RS19670 0.36 -1.7 4,392,393 - HGI48_RS19670 0.75 -1.7 4,392,393 - HGI48_RS19670 0.75 +0.7 4,392,453 - HGI48_RS19670 0.81 +1.4 4,392,677 - -0.7 4,394,482 - +1.3 4,394,499 - -0.5 4,394,499 - -0.0 4,394,516 - +0.3 4,394,516 - -1.0 4,394,516 - -0.1 4,394,538 - -0.2 4,394,645 + +0.8 4,394,646 - +0.1 4,394,646 - +1.5 4,394,646 - -0.2 4,394,646 - -1.2 4,394,666 + -0.0 4,394,667 - -0.6 4,394,667 - -2.2 4,394,708 + -0.5 4,394,708 + -0.7 4,394,717 + -0.2 4,394,718 - +1.1 4,394,719 + -0.2 4,394,720 - +0.8 4,394,732 + -0.4 4,394,732 + +0.8 4,394,732 + -1.7 4,394,733 - +0.6 4,394,733 - +0.1 4,394,733 - -0.9 4,394,766 + +1.2 4,394,766 + -0.2 4,394,766 + +0.4 4,394,766 + +0.4 4,394,766 + +1.2 4,394,767 - +2.3 4,394,767 - -0.7 4,394,767 - +1.3 4,394,767 - +0.4 4,394,771 + +0.5 4,394,805 + +1.5 4,394,805 + -0.2 4,394,805 + +0.3 4,394,806 - -1.5 4,394,806 - +0.3 4,394,809 + -0.4 4,394,809 + +0.1 4,394,809 + -2.7 4,394,809 + -1.0 4,394,809 + -0.9 4,394,809 + -0.2 4,394,810 - -0.2 4,394,810 - -1.2 4,394,810 - -0.6 4,394,810 - +0.4 4,394,810 - -0.5 4,394,810 - -0.3 4,394,840 + -0.4 4,394,850 + -1.2 4,394,851 - -0.2
Or see this region's nucleotide sequence