Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19425 and HGI48_RS19430 are separated by 11 nucleotides HGI48_RS19430 and HGI48_RS19435 are separated by 17 nucleotides HGI48_RS19435 and HGI48_RS19440 overlap by 1 nucleotides HGI48_RS19440 and HGI48_RS19445 are separated by 183 nucleotides
HGI48_RS19425: HGI48_RS19425 - sulfurtransferase complex subunit TusB, at 4,341,778 to 4,342,065
_RS19425
HGI48_RS19430: HGI48_RS19430 - sulfurtransferase complex subunit TusC, at 4,342,077 to 4,342,436
_RS19430
HGI48_RS19435: HGI48_RS19435 - sulfurtransferase complex subunit TusD, at 4,342,454 to 4,342,843
_RS19435
HGI48_RS19440: HGI48_RS19440 - transcriptional regulator, at 4,342,843 to 4,343,565
_RS19440
HGI48_RS19445: HGI48_RS19445 - phosphoethanolamine transferase EptA, at 4,343,749 to 4,345,392
_RS19445
Position (kb) 4342
4343
4344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4341.868 kb on + strand, within HGI48_RS19425 at 4341.902 kb on + strand, within HGI48_RS19425 at 4342.057 kb on - strand at 4342.099 kb on + strand at 4342.099 kb on + strand at 4342.099 kb on + strand at 4342.100 kb on - strand at 4342.100 kb on - strand at 4342.100 kb on - strand at 4342.100 kb on - strand at 4342.208 kb on - strand, within HGI48_RS19430 at 4342.225 kb on + strand, within HGI48_RS19430 at 4342.225 kb on + strand, within HGI48_RS19430 at 4342.225 kb on + strand, within HGI48_RS19430 at 4342.225 kb on + strand, within HGI48_RS19430 at 4342.225 kb on + strand, within HGI48_RS19430 at 4342.253 kb on + strand, within HGI48_RS19430 at 4342.255 kb on + strand, within HGI48_RS19430 at 4342.255 kb on + strand, within HGI48_RS19430 at 4342.256 kb on - strand, within HGI48_RS19430 at 4342.256 kb on - strand, within HGI48_RS19430 at 4342.412 kb on + strand at 4342.413 kb on - strand at 4342.416 kb on + strand at 4342.520 kb on - strand at 4342.553 kb on + strand, within HGI48_RS19435 at 4342.554 kb on - strand, within HGI48_RS19435 at 4342.554 kb on - strand at 4342.722 kb on + strand, within HGI48_RS19435 at 4342.838 kb on + strand at 4342.838 kb on + strand at 4342.839 kb on - strand at 4342.839 kb on - strand at 4342.839 kb on - strand at 4342.839 kb on - strand at 4342.890 kb on - strand at 4342.890 kb on - strand at 4342.890 kb on - strand at 4342.915 kb on - strand at 4342.974 kb on - strand, within HGI48_RS19440 at 4343.078 kb on - strand, within HGI48_RS19440 at 4343.078 kb on - strand, within HGI48_RS19440 at 4343.078 kb on - strand, within HGI48_RS19440 at 4343.243 kb on - strand, within HGI48_RS19440 at 4343.267 kb on + strand, within HGI48_RS19440 at 4343.268 kb on - strand, within HGI48_RS19440 at 4343.268 kb on - strand, within HGI48_RS19440 at 4343.350 kb on - strand at 4343.377 kb on - strand, within HGI48_RS19440 at 4343.377 kb on - strand at 4343.472 kb on - strand at 4343.472 kb on - strand, within HGI48_RS19440 at 4343.547 kb on + strand at 4343.560 kb on - strand at 4343.560 kb on - strand at 4343.592 kb on - strand at 4343.592 kb on - strand at 4343.592 kb on - strand at 4343.600 kb on - strand at 4343.620 kb on - strand at 4343.626 kb on + strand at 4343.626 kb on + strand at 4343.627 kb on - strand at 4343.627 kb on - strand at 4343.647 kb on + strand at 4343.647 kb on + strand at 4343.647 kb on + strand at 4343.648 kb on - strand at 4343.648 kb on - strand at 4343.679 kb on - strand at 4343.679 kb on - strand at 4343.679 kb on - strand at 4343.679 kb on - strand at 4343.689 kb on + strand at 4343.690 kb on - strand at 4343.690 kb on - strand at 4343.695 kb on - strand at 4343.703 kb on + strand at 4343.703 kb on + strand at 4343.704 kb on - strand at 4343.704 kb on - strand at 4343.704 kb on - strand at 4343.704 kb on - strand at 4343.721 kb on - strand at 4343.721 kb on - strand at 4343.721 kb on - strand at 4343.721 kb on - strand at 4343.793 kb on + strand at 4343.794 kb on - strand at 4343.794 kb on - strand at 4343.797 kb on + strand at 4343.797 kb on + strand at 4343.808 kb on - strand at 4343.831 kb on + strand at 4343.832 kb on - strand at 4343.832 kb on - strand at 4343.839 kb on - strand at 4343.846 kb on - strand at 4343.846 kb on - strand at 4343.848 kb on + strand at 4343.858 kb on + strand at 4343.858 kb on + strand at 4343.858 kb on + strand at 4343.859 kb on - strand at 4343.859 kb on - strand at 4343.859 kb on - strand at 4343.861 kb on + strand at 4343.862 kb on - strand at 4343.897 kb on + strand at 4343.897 kb on + strand at 4343.940 kb on + strand, within HGI48_RS19445 at 4343.941 kb on - strand, within HGI48_RS19445 at 4344.000 kb on - strand, within HGI48_RS19445 at 4344.022 kb on + strand, within HGI48_RS19445 at 4344.022 kb on + strand, within HGI48_RS19445 at 4344.022 kb on + strand, within HGI48_RS19445 at 4344.023 kb on - strand, within HGI48_RS19445 at 4344.023 kb on - strand, within HGI48_RS19445 at 4344.023 kb on - strand, within HGI48_RS19445 at 4344.023 kb on - strand, within HGI48_RS19445 at 4344.121 kb on + strand, within HGI48_RS19445 at 4344.121 kb on + strand, within HGI48_RS19445 at 4344.121 kb on + strand, within HGI48_RS19445 at 4344.122 kb on - strand, within HGI48_RS19445 at 4344.122 kb on - strand, within HGI48_RS19445 at 4344.122 kb on - strand, within HGI48_RS19445 at 4344.177 kb on + strand, within HGI48_RS19445 at 4344.198 kb on - strand, within HGI48_RS19445 at 4344.277 kb on + strand at 4344.277 kb on + strand at 4344.278 kb on - strand, within HGI48_RS19445 at 4344.278 kb on - strand, within HGI48_RS19445 at 4344.280 kb on - strand at 4344.287 kb on - strand, within HGI48_RS19445 at 4344.287 kb on - strand, within HGI48_RS19445 at 4344.306 kb on + strand, within HGI48_RS19445 at 4344.306 kb on + strand, within HGI48_RS19445 at 4344.306 kb on + strand, within HGI48_RS19445 at 4344.307 kb on + strand, within HGI48_RS19445 at 4344.343 kb on - strand, within HGI48_RS19445 at 4344.345 kb on + strand, within HGI48_RS19445 at 4344.346 kb on - strand, within HGI48_RS19445 at 4344.364 kb on + strand, within HGI48_RS19445 at 4344.367 kb on + strand, within HGI48_RS19445 at 4344.368 kb on - strand, within HGI48_RS19445 at 4344.368 kb on - strand, within HGI48_RS19445 at 4344.368 kb on - strand, within HGI48_RS19445 at 4344.393 kb on - strand at 4344.393 kb on - strand, within HGI48_RS19445 at 4344.423 kb on + strand, within HGI48_RS19445 at 4344.423 kb on + strand, within HGI48_RS19445 at 4344.424 kb on - strand, within HGI48_RS19445 at 4344.552 kb on + strand, within HGI48_RS19445 at 4344.562 kb on + strand, within HGI48_RS19445 at 4344.562 kb on + strand, within HGI48_RS19445 at 4344.563 kb on - strand, within HGI48_RS19445 at 4344.563 kb on - strand, within HGI48_RS19445 at 4344.563 kb on - strand, within HGI48_RS19445
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,341,868 + HGI48_RS19425 0.31 -0.8 4,341,902 + HGI48_RS19425 0.43 +0.6 4,342,057 - -1.0 4,342,099 + -1.2 4,342,099 + -0.6 4,342,099 + -1.5 4,342,100 - +1.3 4,342,100 - -1.7 4,342,100 - -0.5 4,342,100 - -0.2 4,342,208 - HGI48_RS19430 0.36 +0.5 4,342,225 + HGI48_RS19430 0.41 -1.8 4,342,225 + HGI48_RS19430 0.41 -2.8 4,342,225 + HGI48_RS19430 0.41 -2.9 4,342,225 + HGI48_RS19430 0.41 +0.8 4,342,225 + HGI48_RS19430 0.41 +0.6 4,342,253 + HGI48_RS19430 0.49 -1.5 4,342,255 + HGI48_RS19430 0.49 +0.5 4,342,255 + HGI48_RS19430 0.49 -3.3 4,342,256 - HGI48_RS19430 0.50 +0.0 4,342,256 - HGI48_RS19430 0.50 -1.0 4,342,412 + +1.3 4,342,413 - -1.8 4,342,416 + -1.0 4,342,520 - +0.8 4,342,553 + HGI48_RS19435 0.25 -1.5 4,342,554 - HGI48_RS19435 0.26 -3.4 4,342,554 - +2.4 4,342,722 + HGI48_RS19435 0.69 -0.3 4,342,838 + -0.6 4,342,838 + +0.2 4,342,839 - -2.5 4,342,839 - -0.1 4,342,839 - -0.6 4,342,839 - +0.4 4,342,890 - -0.6 4,342,890 - -0.8 4,342,890 - -0.2 4,342,915 - +0.5 4,342,974 - HGI48_RS19440 0.18 +0.4 4,343,078 - HGI48_RS19440 0.33 +0.6 4,343,078 - HGI48_RS19440 0.33 -1.8 4,343,078 - HGI48_RS19440 0.33 -0.6 4,343,243 - HGI48_RS19440 0.55 -0.5 4,343,267 + HGI48_RS19440 0.59 -2.8 4,343,268 - HGI48_RS19440 0.59 -1.5 4,343,268 - HGI48_RS19440 0.59 -1.8 4,343,350 - +1.2 4,343,377 - HGI48_RS19440 0.74 +0.8 4,343,377 - +0.2 4,343,472 - +0.8 4,343,472 - HGI48_RS19440 0.87 -0.9 4,343,547 + -1.1 4,343,560 - +0.1 4,343,560 - +1.2 4,343,592 - -0.6 4,343,592 - +0.9 4,343,592 - -0.2 4,343,600 - -0.2 4,343,620 - -1.5 4,343,626 + +0.3 4,343,626 + -1.5 4,343,627 - -0.0 4,343,627 - +0.5 4,343,647 + -0.4 4,343,647 + +1.5 4,343,647 + -0.7 4,343,648 - -0.2 4,343,648 - +0.7 4,343,679 - +0.1 4,343,679 - -2.0 4,343,679 - -0.9 4,343,679 - +0.2 4,343,689 + +1.8 4,343,690 - +2.4 4,343,690 - -0.8 4,343,695 - -0.5 4,343,703 + -1.2 4,343,703 + -0.5 4,343,704 - +0.4 4,343,704 - -0.2 4,343,704 - -0.2 4,343,704 - +0.1 4,343,721 - -0.6 4,343,721 - +1.1 4,343,721 - +0.0 4,343,721 - -0.3 4,343,793 + +2.4 4,343,794 - +0.3 4,343,794 - -1.0 4,343,797 + -0.2 4,343,797 + -0.9 4,343,808 - -0.8 4,343,831 + -0.8 4,343,832 - +0.5 4,343,832 - -0.2 4,343,839 - +0.1 4,343,846 - -0.3 4,343,846 - -0.5 4,343,848 + +0.8 4,343,858 + +0.3 4,343,858 + -1.2 4,343,858 + +0.4 4,343,859 - -1.2 4,343,859 - -0.2 4,343,859 - -2.8 4,343,861 + +0.6 4,343,862 - +1.4 4,343,897 + -1.5 4,343,897 + +1.8 4,343,940 + HGI48_RS19445 0.12 +1.1 4,343,941 - HGI48_RS19445 0.12 +0.6 4,344,000 - HGI48_RS19445 0.15 -0.4 4,344,022 + HGI48_RS19445 0.17 +0.5 4,344,022 + HGI48_RS19445 0.17 -1.0 4,344,022 + HGI48_RS19445 0.17 -1.5 4,344,023 - HGI48_RS19445 0.17 -0.5 4,344,023 - HGI48_RS19445 0.17 +0.3 4,344,023 - HGI48_RS19445 0.17 -1.4 4,344,023 - HGI48_RS19445 0.17 -0.2 4,344,121 + HGI48_RS19445 0.23 +0.6 4,344,121 + HGI48_RS19445 0.23 -0.5 4,344,121 + HGI48_RS19445 0.23 -1.0 4,344,122 - HGI48_RS19445 0.23 -0.2 4,344,122 - HGI48_RS19445 0.23 -1.1 4,344,122 - HGI48_RS19445 0.23 -0.4 4,344,177 + HGI48_RS19445 0.26 +0.4 4,344,198 - HGI48_RS19445 0.27 -0.6 4,344,277 + +1.4 4,344,277 + +1.2 4,344,278 - HGI48_RS19445 0.32 +0.4 4,344,278 - HGI48_RS19445 0.32 -0.0 4,344,280 - +1.4 4,344,287 - HGI48_RS19445 0.33 +0.8 4,344,287 - HGI48_RS19445 0.33 +2.1 4,344,306 + HGI48_RS19445 0.34 -1.8 4,344,306 + HGI48_RS19445 0.34 -0.3 4,344,306 + HGI48_RS19445 0.34 +0.3 4,344,307 + HGI48_RS19445 0.34 -0.2 4,344,343 - HGI48_RS19445 0.36 -1.8 4,344,345 + HGI48_RS19445 0.36 +0.8 4,344,346 - HGI48_RS19445 0.36 -1.5 4,344,364 + HGI48_RS19445 0.37 +0.0 4,344,367 + HGI48_RS19445 0.38 +1.2 4,344,368 - HGI48_RS19445 0.38 -0.5 4,344,368 - HGI48_RS19445 0.38 +1.3 4,344,368 - HGI48_RS19445 0.38 +0.4 4,344,393 - +1.2 4,344,393 - HGI48_RS19445 0.39 -2.0 4,344,423 + HGI48_RS19445 0.41 -1.2 4,344,423 + HGI48_RS19445 0.41 +0.6 4,344,424 - HGI48_RS19445 0.41 -0.4 4,344,552 + HGI48_RS19445 0.49 +0.3 4,344,562 + HGI48_RS19445 0.49 -0.2 4,344,562 + HGI48_RS19445 0.49 -0.8 4,344,563 - HGI48_RS19445 0.50 +0.8 4,344,563 - HGI48_RS19445 0.50 -0.3 4,344,563 - HGI48_RS19445 0.50 +0.1
Or see this region's nucleotide sequence