Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18675

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS18665 and HGI48_RS18670 are separated by 186 nucleotidesHGI48_RS18670 and HGI48_RS18675 are separated by 11 nucleotidesHGI48_RS18675 and HGI48_RS18680 overlap by 4 nucleotidesHGI48_RS18680 and HGI48_RS18685 are separated by 2 nucleotides HGI48_RS18665: HGI48_RS18665 - pyridoxal phosphate-dependent aminotransferase, at 4,187,023 to 4,188,225 _RS18665 HGI48_RS18670: HGI48_RS18670 - LamB/YcsF family protein, at 4,188,412 to 4,189,182 _RS18670 HGI48_RS18675: HGI48_RS18675 - biotin-dependent carboxyltransferase family protein, at 4,189,194 to 4,190,180 _RS18675 HGI48_RS18680: HGI48_RS18680 - 5-oxoprolinase subunit PxpB, at 4,190,177 to 4,190,872 _RS18680 HGI48_RS18685: HGI48_RS18685 - ABC transporter substrate-binding protein, at 4,190,875 to 4,191,714 _RS18685 Position (kb) 4189 4190 4191Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4188.261 kb on + strandat 4188.262 kb on - strandat 4188.319 kb on + strandat 4188.320 kb on - strandat 4188.320 kb on - strandat 4188.325 kb on + strandat 4188.325 kb on + strandat 4188.325 kb on + strandat 4188.325 kb on + strandat 4188.325 kb on + strandat 4188.325 kb on + strandat 4188.326 kb on - strandat 4188.326 kb on - strandat 4188.326 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.328 kb on - strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.340 kb on + strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.341 kb on - strandat 4188.342 kb on + strandat 4188.342 kb on + strandat 4188.342 kb on + strandat 4188.357 kb on - strandat 4188.371 kb on + strandat 4188.371 kb on + strandat 4188.372 kb on - strandat 4188.372 kb on - strandat 4188.508 kb on - strandat 4188.513 kb on + strandat 4188.513 kb on + strand, within HGI48_RS18670at 4188.514 kb on - strand, within HGI48_RS18670at 4188.514 kb on - strand, within HGI48_RS18670at 4188.514 kb on - strand, within HGI48_RS18670at 4188.514 kb on - strandat 4188.514 kb on - strand, within HGI48_RS18670at 4188.625 kb on + strand, within HGI48_RS18670at 4188.626 kb on - strand, within HGI48_RS18670at 4188.626 kb on - strand, within HGI48_RS18670at 4188.642 kb on + strand, within HGI48_RS18670at 4188.674 kb on + strand, within HGI48_RS18670at 4188.674 kb on + strand, within HGI48_RS18670at 4188.675 kb on - strand, within HGI48_RS18670at 4188.675 kb on - strand, within HGI48_RS18670at 4188.675 kb on - strand, within HGI48_RS18670at 4188.675 kb on - strand, within HGI48_RS18670at 4188.675 kb on - strand, within HGI48_RS18670at 4188.675 kb on - strand, within HGI48_RS18670at 4188.694 kb on + strand, within HGI48_RS18670at 4188.694 kb on + strand, within HGI48_RS18670at 4188.780 kb on + strand, within HGI48_RS18670at 4188.781 kb on - strand, within HGI48_RS18670at 4188.834 kb on + strand, within HGI48_RS18670at 4188.834 kb on + strand, within HGI48_RS18670at 4188.834 kb on + strand, within HGI48_RS18670at 4188.835 kb on - strand, within HGI48_RS18670at 4188.835 kb on - strandat 4188.835 kb on - strand, within HGI48_RS18670at 4188.835 kb on - strand, within HGI48_RS18670at 4188.835 kb on - strand, within HGI48_RS18670at 4188.858 kb on + strand, within HGI48_RS18670at 4188.858 kb on + strand, within HGI48_RS18670at 4188.858 kb on + strand, within HGI48_RS18670at 4188.859 kb on - strand, within HGI48_RS18670at 4188.859 kb on - strand, within HGI48_RS18670at 4188.859 kb on - strand, within HGI48_RS18670at 4188.859 kb on - strand, within HGI48_RS18670at 4188.859 kb on - strand, within HGI48_RS18670at 4189.051 kb on - strand, within HGI48_RS18670at 4189.104 kb on + strand, within HGI48_RS18670at 4189.104 kb on + strand, within HGI48_RS18670at 4189.104 kb on + strand, within HGI48_RS18670at 4189.104 kb on + strand, within HGI48_RS18670at 4189.104 kb on + strandat 4189.104 kb on + strand, within HGI48_RS18670at 4189.105 kb on - strand, within HGI48_RS18670at 4189.105 kb on - strand, within HGI48_RS18670at 4189.105 kb on - strand, within HGI48_RS18670at 4189.105 kb on - strand, within HGI48_RS18670at 4189.110 kb on + strandat 4189.111 kb on - strandat 4189.111 kb on - strandat 4189.111 kb on - strandat 4189.130 kb on - strandat 4189.136 kb on + strandat 4189.189 kb on + strandat 4189.189 kb on + strandat 4189.190 kb on - strandat 4189.195 kb on + strandat 4189.195 kb on + strandat 4189.195 kb on + strandat 4189.196 kb on - strandat 4189.196 kb on - strandat 4189.196 kb on - strandat 4189.198 kb on - strandat 4189.198 kb on - strandat 4189.246 kb on - strandat 4189.275 kb on - strandat 4189.299 kb on + strand, within HGI48_RS18675at 4189.300 kb on - strand, within HGI48_RS18675at 4189.300 kb on - strand, within HGI48_RS18675at 4189.412 kb on + strandat 4189.445 kb on + strand, within HGI48_RS18675at 4189.445 kb on + strand, within HGI48_RS18675at 4189.446 kb on - strand, within HGI48_RS18675at 4189.463 kb on - strand, within HGI48_RS18675at 4189.538 kb on + strand, within HGI48_RS18675at 4189.539 kb on - strand, within HGI48_RS18675at 4189.595 kb on - strand, within HGI48_RS18675at 4189.627 kb on + strand, within HGI48_RS18675at 4189.627 kb on + strand, within HGI48_RS18675at 4189.628 kb on - strand, within HGI48_RS18675at 4189.628 kb on - strand, within HGI48_RS18675at 4189.779 kb on - strand, within HGI48_RS18675at 4189.809 kb on + strand, within HGI48_RS18675at 4189.818 kb on + strand, within HGI48_RS18675at 4189.818 kb on + strand, within HGI48_RS18675at 4189.818 kb on + strand, within HGI48_RS18675at 4189.818 kb on + strand, within HGI48_RS18675at 4189.819 kb on - strand, within HGI48_RS18675at 4189.819 kb on - strand, within HGI48_RS18675at 4189.819 kb on - strandat 4189.847 kb on - strand, within HGI48_RS18675at 4189.885 kb on - strand, within HGI48_RS18675at 4189.895 kb on + strandat 4189.895 kb on + strand, within HGI48_RS18675at 4189.895 kb on + strand, within HGI48_RS18675at 4189.896 kb on - strand, within HGI48_RS18675at 4189.896 kb on - strand, within HGI48_RS18675at 4189.896 kb on - strand, within HGI48_RS18675at 4189.896 kb on - strand, within HGI48_RS18675at 4189.896 kb on - strand, within HGI48_RS18675at 4189.896 kb on - strand, within HGI48_RS18675at 4189.899 kb on + strand, within HGI48_RS18675at 4189.899 kb on + strand, within HGI48_RS18675at 4189.900 kb on - strand, within HGI48_RS18675at 4189.900 kb on - strand, within HGI48_RS18675at 4189.900 kb on - strand, within HGI48_RS18675at 4189.979 kb on + strandat 4189.979 kb on + strand, within HGI48_RS18675at 4190.057 kb on + strand, within HGI48_RS18675at 4190.147 kb on + strandat 4190.147 kb on + strandat 4190.147 kb on + strandat 4190.147 kb on + strandat 4190.147 kb on + strandat 4190.147 kb on + strandat 4190.148 kb on - strandat 4190.148 kb on - strandat 4190.148 kb on - strandat 4190.148 kb on - strandat 4190.258 kb on + strand, within HGI48_RS18680at 4190.258 kb on + strand, within HGI48_RS18680at 4190.258 kb on + strand, within HGI48_RS18680at 4190.258 kb on + strand, within HGI48_RS18680at 4190.259 kb on - strand, within HGI48_RS18680at 4190.359 kb on + strand, within HGI48_RS18680at 4190.360 kb on - strand, within HGI48_RS18680at 4190.360 kb on - strand, within HGI48_RS18680at 4190.360 kb on - strand, within HGI48_RS18680at 4190.418 kb on + strand, within HGI48_RS18680at 4190.450 kb on + strand, within HGI48_RS18680at 4190.451 kb on - strand, within HGI48_RS18680at 4190.457 kb on + strand, within HGI48_RS18680at 4190.457 kb on + strand, within HGI48_RS18680at 4190.457 kb on + strand, within HGI48_RS18680at 4190.457 kb on + strand, within HGI48_RS18680at 4190.457 kb on + strand, within HGI48_RS18680at 4190.457 kb on + strand, within HGI48_RS18680at 4190.458 kb on - strand, within HGI48_RS18680at 4190.458 kb on - strand, within HGI48_RS18680at 4190.458 kb on - strand, within HGI48_RS18680at 4190.458 kb on - strand, within HGI48_RS18680at 4190.458 kb on - strand, within HGI48_RS18680at 4190.563 kb on + strand, within HGI48_RS18680at 4190.564 kb on - strand, within HGI48_RS18680at 4190.729 kb on + strand, within HGI48_RS18680at 4190.729 kb on + strand, within HGI48_RS18680at 4190.730 kb on - strand, within HGI48_RS18680at 4190.730 kb on - strand, within HGI48_RS18680at 4190.730 kb on - strand, within HGI48_RS18680at 4190.806 kb on + strandat 4190.806 kb on + strandat 4190.806 kb on + strandat 4190.807 kb on - strandat 4190.809 kb on + strandat 4190.809 kb on + strandat 4190.810 kb on - strandat 4190.810 kb on - strandat 4190.810 kb on - strandat 4190.815 kb on + strandat 4190.816 kb on - strandat 4190.816 kb on - strandat 4190.872 kb on + strandat 4190.872 kb on + strandat 4190.872 kb on + strandat 4190.872 kb on + strandat 4190.872 kb on + strandat 4190.872 kb on + strandat 4190.872 kb on + strandat 4190.873 kb on - strandat 4190.873 kb on - strandat 4190.873 kb on - strandat 4190.873 kb on - strandat 4190.873 kb on - strandat 4190.873 kb on - strandat 4190.876 kb on + strandat 4190.877 kb on - strandat 4190.877 kb on - strandat 4190.925 kb on + strandat 4190.934 kb on + strandat 4190.934 kb on + strandat 4190.934 kb on + strandat 4190.934 kb on + strandat 4190.934 kb on + strandat 4190.935 kb on - strandat 4190.939 kb on + strandat 4190.940 kb on - strandat 4190.940 kb on - strandat 4190.940 kb on - strandat 4191.129 kb on + strand, within HGI48_RS18685at 4191.138 kb on + strand, within HGI48_RS18685at 4191.153 kb on + strand, within HGI48_RS18685at 4191.153 kb on + strand, within HGI48_RS18685at 4191.154 kb on - strand, within HGI48_RS18685at 4191.177 kb on + strand, within HGI48_RS18685

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,188,261 + -0.3
4,188,262 - +0.8
4,188,319 + +2.5
4,188,320 - -0.8
4,188,320 - +2.3
4,188,325 + +1.5
4,188,325 + +0.1
4,188,325 + -0.5
4,188,325 + -0.7
4,188,325 + +0.5
4,188,325 + -0.4
4,188,326 - -1.0
4,188,326 - -0.0
4,188,326 - +0.0
4,188,328 - +0.8
4,188,328 - +0.3
4,188,328 - +0.3
4,188,340 + +0.8
4,188,340 + +0.5
4,188,340 + +1.1
4,188,340 + -0.8
4,188,340 + -0.3
4,188,340 + -1.2
4,188,340 + +0.8
4,188,340 + +1.0
4,188,340 + +0.3
4,188,340 + -1.0
4,188,340 + -0.2
4,188,341 - +0.5
4,188,341 - -1.0
4,188,341 - -0.2
4,188,341 - +1.5
4,188,341 - +0.5
4,188,341 - +2.3
4,188,341 - -0.2
4,188,341 - -0.5
4,188,341 - -1.5
4,188,341 - -0.0
4,188,341 - +0.8
4,188,342 + -0.8
4,188,342 + +1.5
4,188,342 + +1.0
4,188,357 - -0.8
4,188,371 + -2.2
4,188,371 + -0.4
4,188,372 - +1.5
4,188,372 - -0.7
4,188,508 - -0.8
4,188,513 + -0.8
4,188,513 + HGI48_RS18670 0.13 +0.3
4,188,514 - HGI48_RS18670 0.13 +0.5
4,188,514 - HGI48_RS18670 0.13 -1.1
4,188,514 - HGI48_RS18670 0.13 -0.6
4,188,514 - -0.2
4,188,514 - HGI48_RS18670 0.13 -0.3
4,188,625 + HGI48_RS18670 0.28 -0.7
4,188,626 - HGI48_RS18670 0.28 +1.0
4,188,626 - HGI48_RS18670 0.28 -1.2
4,188,642 + HGI48_RS18670 0.30 -0.8
4,188,674 + HGI48_RS18670 0.34 -1.0
4,188,674 + HGI48_RS18670 0.34 -1.7
4,188,675 - HGI48_RS18670 0.34 +0.4
4,188,675 - HGI48_RS18670 0.34 -0.2
4,188,675 - HGI48_RS18670 0.34 +1.0
4,188,675 - HGI48_RS18670 0.34 -1.8
4,188,675 - HGI48_RS18670 0.34 -0.6
4,188,675 - HGI48_RS18670 0.34 -1.2
4,188,694 + HGI48_RS18670 0.37 -1.6
4,188,694 + HGI48_RS18670 0.37 -0.5
4,188,780 + HGI48_RS18670 0.48 -0.4
4,188,781 - HGI48_RS18670 0.48 -0.7
4,188,834 + HGI48_RS18670 0.55 -1.8
4,188,834 + HGI48_RS18670 0.55 -0.5
4,188,834 + HGI48_RS18670 0.55 +0.3
4,188,835 - HGI48_RS18670 0.55 -0.6
4,188,835 - -0.2
4,188,835 - HGI48_RS18670 0.55 -1.2
4,188,835 - HGI48_RS18670 0.55 +1.2
4,188,835 - HGI48_RS18670 0.55 +0.3
4,188,858 + HGI48_RS18670 0.58 +0.8
4,188,858 + HGI48_RS18670 0.58 +0.0
4,188,858 + HGI48_RS18670 0.58 +0.8
4,188,859 - HGI48_RS18670 0.58 -0.0
4,188,859 - HGI48_RS18670 0.58 +0.1
4,188,859 - HGI48_RS18670 0.58 +0.7
4,188,859 - HGI48_RS18670 0.58 -0.2
4,188,859 - HGI48_RS18670 0.58 -0.7
4,189,051 - HGI48_RS18670 0.83 +0.3
4,189,104 + HGI48_RS18670 0.90 -0.4
4,189,104 + HGI48_RS18670 0.90 -0.2
4,189,104 + HGI48_RS18670 0.90 -1.3
4,189,104 + HGI48_RS18670 0.90 -0.2
4,189,104 + +1.8
4,189,104 + HGI48_RS18670 0.90 -1.8
4,189,105 - HGI48_RS18670 0.90 -0.8
4,189,105 - HGI48_RS18670 0.90 +0.8
4,189,105 - HGI48_RS18670 0.90 -0.6
4,189,105 - HGI48_RS18670 0.90 +0.8
4,189,110 + -0.5
4,189,111 - -0.8
4,189,111 - -1.7
4,189,111 - -1.6
4,189,130 - -0.6
4,189,136 + -0.8
4,189,189 + -1.0
4,189,189 + -0.5
4,189,190 - +1.8
4,189,195 + +0.8
4,189,195 + +1.0
4,189,195 + -0.5
4,189,196 - +0.4
4,189,196 - -0.4
4,189,196 - -2.4
4,189,198 - +0.0
4,189,198 - -1.1
4,189,246 - -0.2
4,189,275 - +0.4
4,189,299 + HGI48_RS18675 0.11 +0.9
4,189,300 - HGI48_RS18675 0.11 -0.2
4,189,300 - HGI48_RS18675 0.11 -1.8
4,189,412 + +1.8
4,189,445 + HGI48_RS18675 0.25 +1.6
4,189,445 + HGI48_RS18675 0.25 -0.6
4,189,446 - HGI48_RS18675 0.26 -0.2
4,189,463 - HGI48_RS18675 0.27 -1.2
4,189,538 + HGI48_RS18675 0.35 -1.8
4,189,539 - HGI48_RS18675 0.35 +0.3
4,189,595 - HGI48_RS18675 0.41 +2.3
4,189,627 + HGI48_RS18675 0.44 +0.3
4,189,627 + HGI48_RS18675 0.44 -2.6
4,189,628 - HGI48_RS18675 0.44 -2.0
4,189,628 - HGI48_RS18675 0.44 -1.2
4,189,779 - HGI48_RS18675 0.59 -0.2
4,189,809 + HGI48_RS18675 0.62 -0.4
4,189,818 + HGI48_RS18675 0.63 -0.8
4,189,818 + HGI48_RS18675 0.63 -0.8
4,189,818 + HGI48_RS18675 0.63 -2.6
4,189,818 + HGI48_RS18675 0.63 +0.4
4,189,819 - HGI48_RS18675 0.63 +1.8
4,189,819 - HGI48_RS18675 0.63 -0.5
4,189,819 - +1.8
4,189,847 - HGI48_RS18675 0.66 +1.4
4,189,885 - HGI48_RS18675 0.70 +3.6
4,189,895 + +1.8
4,189,895 + HGI48_RS18675 0.71 -0.2
4,189,895 + HGI48_RS18675 0.71 +1.6
4,189,896 - HGI48_RS18675 0.71 +0.0
4,189,896 - HGI48_RS18675 0.71 +1.0
4,189,896 - HGI48_RS18675 0.71 +0.4
4,189,896 - HGI48_RS18675 0.71 +1.0
4,189,896 - HGI48_RS18675 0.71 +0.2
4,189,896 - HGI48_RS18675 0.71 -0.2
4,189,899 + HGI48_RS18675 0.71 -1.4
4,189,899 + HGI48_RS18675 0.71 -0.8
4,189,900 - HGI48_RS18675 0.72 -1.2
4,189,900 - HGI48_RS18675 0.72 -1.6
4,189,900 - HGI48_RS18675 0.72 -0.6
4,189,979 + +0.8
4,189,979 + HGI48_RS18675 0.80 +1.8
4,190,057 + HGI48_RS18675 0.87 +0.2
4,190,147 + -0.4
4,190,147 + -0.6
4,190,147 + +1.0
4,190,147 + -0.2
4,190,147 + -1.0
4,190,147 + -1.0
4,190,148 - +0.3
4,190,148 - -0.2
4,190,148 - +0.3
4,190,148 - -0.2
4,190,258 + HGI48_RS18680 0.12 +0.5
4,190,258 + HGI48_RS18680 0.12 +0.8
4,190,258 + HGI48_RS18680 0.12 -1.4
4,190,258 + HGI48_RS18680 0.12 -0.2
4,190,259 - HGI48_RS18680 0.12 +0.1
4,190,359 + HGI48_RS18680 0.26 -0.7
4,190,360 - HGI48_RS18680 0.26 -1.7
4,190,360 - HGI48_RS18680 0.26 +1.6
4,190,360 - HGI48_RS18680 0.26 +0.9
4,190,418 + HGI48_RS18680 0.35 +0.1
4,190,450 + HGI48_RS18680 0.39 +1.5
4,190,451 - HGI48_RS18680 0.39 -0.1
4,190,457 + HGI48_RS18680 0.40 +0.1
4,190,457 + HGI48_RS18680 0.40 -0.2
4,190,457 + HGI48_RS18680 0.40 -0.2
4,190,457 + HGI48_RS18680 0.40 -1.0
4,190,457 + HGI48_RS18680 0.40 +0.3
4,190,457 + HGI48_RS18680 0.40 -1.1
4,190,458 - HGI48_RS18680 0.40 +1.2
4,190,458 - HGI48_RS18680 0.40 -0.2
4,190,458 - HGI48_RS18680 0.40 +0.0
4,190,458 - HGI48_RS18680 0.40 -0.8
4,190,458 - HGI48_RS18680 0.40 -0.7
4,190,563 + HGI48_RS18680 0.55 -0.7
4,190,564 - HGI48_RS18680 0.56 -0.4
4,190,729 + HGI48_RS18680 0.79 -0.6
4,190,729 + HGI48_RS18680 0.79 +0.4
4,190,730 - HGI48_RS18680 0.79 +0.5
4,190,730 - HGI48_RS18680 0.79 -0.0
4,190,730 - HGI48_RS18680 0.79 +0.8
4,190,806 + -0.1
4,190,806 + -1.0
4,190,806 + -1.2
4,190,807 - -0.6
4,190,809 + +0.5
4,190,809 + +0.3
4,190,810 - -0.2
4,190,810 - +0.5
4,190,810 - -0.8
4,190,815 + +0.8
4,190,816 - -1.2
4,190,816 - +0.2
4,190,872 + +0.9
4,190,872 + -0.2
4,190,872 + -0.9
4,190,872 + -0.2
4,190,872 + +1.2
4,190,872 + -1.4
4,190,872 + -1.0
4,190,873 - +0.1
4,190,873 - -2.4
4,190,873 - +0.0
4,190,873 - -1.0
4,190,873 - -0.2
4,190,873 - +0.4
4,190,876 + +0.6
4,190,877 - +1.3
4,190,877 - +2.2
4,190,925 + +0.3
4,190,934 + -1.2
4,190,934 + +0.0
4,190,934 + +1.3
4,190,934 + +1.1
4,190,934 + -1.6
4,190,935 - -0.0
4,190,939 + -0.4
4,190,940 - +0.4
4,190,940 - -0.4
4,190,940 - -1.6
4,191,129 + HGI48_RS18685 0.30 +1.4
4,191,138 + HGI48_RS18685 0.31 -1.7
4,191,153 + HGI48_RS18685 0.33 +0.3
4,191,153 + HGI48_RS18685 0.33 -2.2
4,191,154 - HGI48_RS18685 0.33 +1.4
4,191,177 + HGI48_RS18685 0.36 -0.6

Or see this region's nucleotide sequence