Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18665 and HGI48_RS18670 are separated by 186 nucleotides HGI48_RS18670 and HGI48_RS18675 are separated by 11 nucleotides HGI48_RS18675 and HGI48_RS18680 overlap by 4 nucleotides HGI48_RS18680 and HGI48_RS18685 are separated by 2 nucleotides
HGI48_RS18665: HGI48_RS18665 - pyridoxal phosphate-dependent aminotransferase, at 4,187,023 to 4,188,225
_RS18665
HGI48_RS18670: HGI48_RS18670 - LamB/YcsF family protein, at 4,188,412 to 4,189,182
_RS18670
HGI48_RS18675: HGI48_RS18675 - biotin-dependent carboxyltransferase family protein, at 4,189,194 to 4,190,180
_RS18675
HGI48_RS18680: HGI48_RS18680 - 5-oxoprolinase subunit PxpB, at 4,190,177 to 4,190,872
_RS18680
HGI48_RS18685: HGI48_RS18685 - ABC transporter substrate-binding protein, at 4,190,875 to 4,191,714
_RS18685
Position (kb)
4189
4190
4191 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4188.261 kb on + strand at 4188.262 kb on - strand at 4188.319 kb on + strand at 4188.320 kb on - strand at 4188.320 kb on - strand at 4188.325 kb on + strand at 4188.325 kb on + strand at 4188.325 kb on + strand at 4188.325 kb on + strand at 4188.325 kb on + strand at 4188.325 kb on + strand at 4188.326 kb on - strand at 4188.326 kb on - strand at 4188.326 kb on - strand at 4188.328 kb on - strand at 4188.328 kb on - strand at 4188.328 kb on - strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.341 kb on - strand at 4188.342 kb on + strand at 4188.342 kb on + strand at 4188.342 kb on + strand at 4188.357 kb on - strand at 4188.371 kb on + strand at 4188.371 kb on + strand at 4188.372 kb on - strand at 4188.372 kb on - strand at 4188.508 kb on - strand at 4188.513 kb on + strand at 4188.513 kb on + strand, within HGI48_RS18670 at 4188.514 kb on - strand, within HGI48_RS18670 at 4188.514 kb on - strand, within HGI48_RS18670 at 4188.514 kb on - strand, within HGI48_RS18670 at 4188.514 kb on - strand at 4188.514 kb on - strand, within HGI48_RS18670 at 4188.625 kb on + strand, within HGI48_RS18670 at 4188.626 kb on - strand, within HGI48_RS18670 at 4188.626 kb on - strand, within HGI48_RS18670 at 4188.642 kb on + strand, within HGI48_RS18670 at 4188.674 kb on + strand, within HGI48_RS18670 at 4188.674 kb on + strand, within HGI48_RS18670 at 4188.675 kb on - strand, within HGI48_RS18670 at 4188.675 kb on - strand, within HGI48_RS18670 at 4188.675 kb on - strand, within HGI48_RS18670 at 4188.675 kb on - strand, within HGI48_RS18670 at 4188.675 kb on - strand, within HGI48_RS18670 at 4188.675 kb on - strand, within HGI48_RS18670 at 4188.694 kb on + strand, within HGI48_RS18670 at 4188.694 kb on + strand, within HGI48_RS18670 at 4188.780 kb on + strand, within HGI48_RS18670 at 4188.781 kb on - strand, within HGI48_RS18670 at 4188.834 kb on + strand, within HGI48_RS18670 at 4188.834 kb on + strand, within HGI48_RS18670 at 4188.834 kb on + strand, within HGI48_RS18670 at 4188.835 kb on - strand, within HGI48_RS18670 at 4188.835 kb on - strand at 4188.835 kb on - strand, within HGI48_RS18670 at 4188.835 kb on - strand, within HGI48_RS18670 at 4188.835 kb on - strand, within HGI48_RS18670 at 4188.858 kb on + strand, within HGI48_RS18670 at 4188.858 kb on + strand, within HGI48_RS18670 at 4188.858 kb on + strand, within HGI48_RS18670 at 4188.859 kb on - strand, within HGI48_RS18670 at 4188.859 kb on - strand, within HGI48_RS18670 at 4188.859 kb on - strand, within HGI48_RS18670 at 4188.859 kb on - strand, within HGI48_RS18670 at 4188.859 kb on - strand, within HGI48_RS18670 at 4189.051 kb on - strand, within HGI48_RS18670 at 4189.104 kb on + strand, within HGI48_RS18670 at 4189.104 kb on + strand, within HGI48_RS18670 at 4189.104 kb on + strand, within HGI48_RS18670 at 4189.104 kb on + strand, within HGI48_RS18670 at 4189.104 kb on + strand at 4189.104 kb on + strand, within HGI48_RS18670 at 4189.105 kb on - strand, within HGI48_RS18670 at 4189.105 kb on - strand, within HGI48_RS18670 at 4189.105 kb on - strand, within HGI48_RS18670 at 4189.105 kb on - strand, within HGI48_RS18670 at 4189.110 kb on + strand at 4189.111 kb on - strand at 4189.111 kb on - strand at 4189.111 kb on - strand at 4189.130 kb on - strand at 4189.136 kb on + strand at 4189.189 kb on + strand at 4189.189 kb on + strand at 4189.190 kb on - strand at 4189.195 kb on + strand at 4189.195 kb on + strand at 4189.195 kb on + strand at 4189.196 kb on - strand at 4189.196 kb on - strand at 4189.196 kb on - strand at 4189.198 kb on - strand at 4189.198 kb on - strand at 4189.246 kb on - strand at 4189.275 kb on - strand at 4189.299 kb on + strand, within HGI48_RS18675 at 4189.300 kb on - strand, within HGI48_RS18675 at 4189.300 kb on - strand, within HGI48_RS18675 at 4189.412 kb on + strand at 4189.445 kb on + strand, within HGI48_RS18675 at 4189.445 kb on + strand, within HGI48_RS18675 at 4189.446 kb on - strand, within HGI48_RS18675 at 4189.463 kb on - strand, within HGI48_RS18675 at 4189.538 kb on + strand, within HGI48_RS18675 at 4189.539 kb on - strand, within HGI48_RS18675 at 4189.595 kb on - strand, within HGI48_RS18675 at 4189.627 kb on + strand, within HGI48_RS18675 at 4189.627 kb on + strand, within HGI48_RS18675 at 4189.628 kb on - strand, within HGI48_RS18675 at 4189.628 kb on - strand, within HGI48_RS18675 at 4189.779 kb on - strand, within HGI48_RS18675 at 4189.809 kb on + strand, within HGI48_RS18675 at 4189.818 kb on + strand, within HGI48_RS18675 at 4189.818 kb on + strand, within HGI48_RS18675 at 4189.818 kb on + strand, within HGI48_RS18675 at 4189.818 kb on + strand, within HGI48_RS18675 at 4189.819 kb on - strand, within HGI48_RS18675 at 4189.819 kb on - strand, within HGI48_RS18675 at 4189.819 kb on - strand at 4189.847 kb on - strand, within HGI48_RS18675 at 4189.885 kb on - strand, within HGI48_RS18675 at 4189.895 kb on + strand at 4189.895 kb on + strand, within HGI48_RS18675 at 4189.895 kb on + strand, within HGI48_RS18675 at 4189.896 kb on - strand, within HGI48_RS18675 at 4189.896 kb on - strand, within HGI48_RS18675 at 4189.896 kb on - strand, within HGI48_RS18675 at 4189.896 kb on - strand, within HGI48_RS18675 at 4189.896 kb on - strand, within HGI48_RS18675 at 4189.896 kb on - strand, within HGI48_RS18675 at 4189.899 kb on + strand, within HGI48_RS18675 at 4189.899 kb on + strand, within HGI48_RS18675 at 4189.900 kb on - strand, within HGI48_RS18675 at 4189.900 kb on - strand, within HGI48_RS18675 at 4189.900 kb on - strand, within HGI48_RS18675 at 4189.979 kb on + strand at 4189.979 kb on + strand, within HGI48_RS18675 at 4190.057 kb on + strand, within HGI48_RS18675 at 4190.147 kb on + strand at 4190.147 kb on + strand at 4190.147 kb on + strand at 4190.147 kb on + strand at 4190.147 kb on + strand at 4190.147 kb on + strand at 4190.148 kb on - strand at 4190.148 kb on - strand at 4190.148 kb on - strand at 4190.148 kb on - strand at 4190.258 kb on + strand, within HGI48_RS18680 at 4190.258 kb on + strand, within HGI48_RS18680 at 4190.258 kb on + strand, within HGI48_RS18680 at 4190.258 kb on + strand, within HGI48_RS18680 at 4190.259 kb on - strand, within HGI48_RS18680 at 4190.359 kb on + strand, within HGI48_RS18680 at 4190.360 kb on - strand, within HGI48_RS18680 at 4190.360 kb on - strand, within HGI48_RS18680 at 4190.360 kb on - strand, within HGI48_RS18680 at 4190.418 kb on + strand, within HGI48_RS18680 at 4190.450 kb on + strand, within HGI48_RS18680 at 4190.451 kb on - strand, within HGI48_RS18680 at 4190.457 kb on + strand, within HGI48_RS18680 at 4190.457 kb on + strand, within HGI48_RS18680 at 4190.457 kb on + strand, within HGI48_RS18680 at 4190.457 kb on + strand, within HGI48_RS18680 at 4190.457 kb on + strand, within HGI48_RS18680 at 4190.457 kb on + strand, within HGI48_RS18680 at 4190.458 kb on - strand, within HGI48_RS18680 at 4190.458 kb on - strand, within HGI48_RS18680 at 4190.458 kb on - strand, within HGI48_RS18680 at 4190.458 kb on - strand, within HGI48_RS18680 at 4190.458 kb on - strand, within HGI48_RS18680 at 4190.563 kb on + strand, within HGI48_RS18680 at 4190.564 kb on - strand, within HGI48_RS18680 at 4190.729 kb on + strand, within HGI48_RS18680 at 4190.729 kb on + strand, within HGI48_RS18680 at 4190.730 kb on - strand, within HGI48_RS18680 at 4190.730 kb on - strand, within HGI48_RS18680 at 4190.730 kb on - strand, within HGI48_RS18680 at 4190.806 kb on + strand at 4190.806 kb on + strand at 4190.806 kb on + strand at 4190.807 kb on - strand at 4190.809 kb on + strand at 4190.809 kb on + strand at 4190.810 kb on - strand at 4190.810 kb on - strand at 4190.810 kb on - strand at 4190.815 kb on + strand at 4190.816 kb on - strand at 4190.816 kb on - strand at 4190.872 kb on + strand at 4190.872 kb on + strand at 4190.872 kb on + strand at 4190.872 kb on + strand at 4190.872 kb on + strand at 4190.872 kb on + strand at 4190.872 kb on + strand at 4190.873 kb on - strand at 4190.873 kb on - strand at 4190.873 kb on - strand at 4190.873 kb on - strand at 4190.873 kb on - strand at 4190.873 kb on - strand at 4190.876 kb on + strand at 4190.877 kb on - strand at 4190.877 kb on - strand at 4190.925 kb on + strand at 4190.934 kb on + strand at 4190.934 kb on + strand at 4190.934 kb on + strand at 4190.934 kb on + strand at 4190.934 kb on + strand at 4190.935 kb on - strand at 4190.939 kb on + strand at 4190.940 kb on - strand at 4190.940 kb on - strand at 4190.940 kb on - strand at 4191.129 kb on + strand, within HGI48_RS18685 at 4191.138 kb on + strand, within HGI48_RS18685 at 4191.153 kb on + strand, within HGI48_RS18685 at 4191.153 kb on + strand, within HGI48_RS18685 at 4191.154 kb on - strand, within HGI48_RS18685 at 4191.177 kb on + strand, within HGI48_RS18685
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,188,261 + -0.3 4,188,262 - +0.8 4,188,319 + +2.5 4,188,320 - -0.8 4,188,320 - +2.3 4,188,325 + +1.5 4,188,325 + +0.1 4,188,325 + -0.5 4,188,325 + -0.7 4,188,325 + +0.5 4,188,325 + -0.4 4,188,326 - -1.0 4,188,326 - -0.0 4,188,326 - +0.0 4,188,328 - +0.8 4,188,328 - +0.3 4,188,328 - +0.3 4,188,340 + +0.8 4,188,340 + +0.5 4,188,340 + +1.1 4,188,340 + -0.8 4,188,340 + -0.3 4,188,340 + -1.2 4,188,340 + +0.8 4,188,340 + +1.0 4,188,340 + +0.3 4,188,340 + -1.0 4,188,340 + -0.2 4,188,341 - +0.5 4,188,341 - -1.0 4,188,341 - -0.2 4,188,341 - +1.5 4,188,341 - +0.5 4,188,341 - +2.3 4,188,341 - -0.2 4,188,341 - -0.5 4,188,341 - -1.5 4,188,341 - -0.0 4,188,341 - +0.8 4,188,342 + -0.8 4,188,342 + +1.5 4,188,342 + +1.0 4,188,357 - -0.8 4,188,371 + -2.2 4,188,371 + -0.4 4,188,372 - +1.5 4,188,372 - -0.7 4,188,508 - -0.8 4,188,513 + -0.8 4,188,513 + HGI48_RS18670 0.13 +0.3 4,188,514 - HGI48_RS18670 0.13 +0.5 4,188,514 - HGI48_RS18670 0.13 -1.1 4,188,514 - HGI48_RS18670 0.13 -0.6 4,188,514 - -0.2 4,188,514 - HGI48_RS18670 0.13 -0.3 4,188,625 + HGI48_RS18670 0.28 -0.7 4,188,626 - HGI48_RS18670 0.28 +1.0 4,188,626 - HGI48_RS18670 0.28 -1.2 4,188,642 + HGI48_RS18670 0.30 -0.8 4,188,674 + HGI48_RS18670 0.34 -1.0 4,188,674 + HGI48_RS18670 0.34 -1.7 4,188,675 - HGI48_RS18670 0.34 +0.4 4,188,675 - HGI48_RS18670 0.34 -0.2 4,188,675 - HGI48_RS18670 0.34 +1.0 4,188,675 - HGI48_RS18670 0.34 -1.8 4,188,675 - HGI48_RS18670 0.34 -0.6 4,188,675 - HGI48_RS18670 0.34 -1.2 4,188,694 + HGI48_RS18670 0.37 -1.6 4,188,694 + HGI48_RS18670 0.37 -0.5 4,188,780 + HGI48_RS18670 0.48 -0.4 4,188,781 - HGI48_RS18670 0.48 -0.7 4,188,834 + HGI48_RS18670 0.55 -1.8 4,188,834 + HGI48_RS18670 0.55 -0.5 4,188,834 + HGI48_RS18670 0.55 +0.3 4,188,835 - HGI48_RS18670 0.55 -0.6 4,188,835 - -0.2 4,188,835 - HGI48_RS18670 0.55 -1.2 4,188,835 - HGI48_RS18670 0.55 +1.2 4,188,835 - HGI48_RS18670 0.55 +0.3 4,188,858 + HGI48_RS18670 0.58 +0.8 4,188,858 + HGI48_RS18670 0.58 +0.0 4,188,858 + HGI48_RS18670 0.58 +0.8 4,188,859 - HGI48_RS18670 0.58 -0.0 4,188,859 - HGI48_RS18670 0.58 +0.1 4,188,859 - HGI48_RS18670 0.58 +0.7 4,188,859 - HGI48_RS18670 0.58 -0.2 4,188,859 - HGI48_RS18670 0.58 -0.7 4,189,051 - HGI48_RS18670 0.83 +0.3 4,189,104 + HGI48_RS18670 0.90 -0.4 4,189,104 + HGI48_RS18670 0.90 -0.2 4,189,104 + HGI48_RS18670 0.90 -1.3 4,189,104 + HGI48_RS18670 0.90 -0.2 4,189,104 + +1.8 4,189,104 + HGI48_RS18670 0.90 -1.8 4,189,105 - HGI48_RS18670 0.90 -0.8 4,189,105 - HGI48_RS18670 0.90 +0.8 4,189,105 - HGI48_RS18670 0.90 -0.6 4,189,105 - HGI48_RS18670 0.90 +0.8 4,189,110 + -0.5 4,189,111 - -0.8 4,189,111 - -1.7 4,189,111 - -1.6 4,189,130 - -0.6 4,189,136 + -0.8 4,189,189 + -1.0 4,189,189 + -0.5 4,189,190 - +1.8 4,189,195 + +0.8 4,189,195 + +1.0 4,189,195 + -0.5 4,189,196 - +0.4 4,189,196 - -0.4 4,189,196 - -2.4 4,189,198 - +0.0 4,189,198 - -1.1 4,189,246 - -0.2 4,189,275 - +0.4 4,189,299 + HGI48_RS18675 0.11 +0.9 4,189,300 - HGI48_RS18675 0.11 -0.2 4,189,300 - HGI48_RS18675 0.11 -1.8 4,189,412 + +1.8 4,189,445 + HGI48_RS18675 0.25 +1.6 4,189,445 + HGI48_RS18675 0.25 -0.6 4,189,446 - HGI48_RS18675 0.26 -0.2 4,189,463 - HGI48_RS18675 0.27 -1.2 4,189,538 + HGI48_RS18675 0.35 -1.8 4,189,539 - HGI48_RS18675 0.35 +0.3 4,189,595 - HGI48_RS18675 0.41 +2.3 4,189,627 + HGI48_RS18675 0.44 +0.3 4,189,627 + HGI48_RS18675 0.44 -2.6 4,189,628 - HGI48_RS18675 0.44 -2.0 4,189,628 - HGI48_RS18675 0.44 -1.2 4,189,779 - HGI48_RS18675 0.59 -0.2 4,189,809 + HGI48_RS18675 0.62 -0.4 4,189,818 + HGI48_RS18675 0.63 -0.8 4,189,818 + HGI48_RS18675 0.63 -0.8 4,189,818 + HGI48_RS18675 0.63 -2.6 4,189,818 + HGI48_RS18675 0.63 +0.4 4,189,819 - HGI48_RS18675 0.63 +1.8 4,189,819 - HGI48_RS18675 0.63 -0.5 4,189,819 - +1.8 4,189,847 - HGI48_RS18675 0.66 +1.4 4,189,885 - HGI48_RS18675 0.70 +3.6 4,189,895 + +1.8 4,189,895 + HGI48_RS18675 0.71 -0.2 4,189,895 + HGI48_RS18675 0.71 +1.6 4,189,896 - HGI48_RS18675 0.71 +0.0 4,189,896 - HGI48_RS18675 0.71 +1.0 4,189,896 - HGI48_RS18675 0.71 +0.4 4,189,896 - HGI48_RS18675 0.71 +1.0 4,189,896 - HGI48_RS18675 0.71 +0.2 4,189,896 - HGI48_RS18675 0.71 -0.2 4,189,899 + HGI48_RS18675 0.71 -1.4 4,189,899 + HGI48_RS18675 0.71 -0.8 4,189,900 - HGI48_RS18675 0.72 -1.2 4,189,900 - HGI48_RS18675 0.72 -1.6 4,189,900 - HGI48_RS18675 0.72 -0.6 4,189,979 + +0.8 4,189,979 + HGI48_RS18675 0.80 +1.8 4,190,057 + HGI48_RS18675 0.87 +0.2 4,190,147 + -0.4 4,190,147 + -0.6 4,190,147 + +1.0 4,190,147 + -0.2 4,190,147 + -1.0 4,190,147 + -1.0 4,190,148 - +0.3 4,190,148 - -0.2 4,190,148 - +0.3 4,190,148 - -0.2 4,190,258 + HGI48_RS18680 0.12 +0.5 4,190,258 + HGI48_RS18680 0.12 +0.8 4,190,258 + HGI48_RS18680 0.12 -1.4 4,190,258 + HGI48_RS18680 0.12 -0.2 4,190,259 - HGI48_RS18680 0.12 +0.1 4,190,359 + HGI48_RS18680 0.26 -0.7 4,190,360 - HGI48_RS18680 0.26 -1.7 4,190,360 - HGI48_RS18680 0.26 +1.6 4,190,360 - HGI48_RS18680 0.26 +0.9 4,190,418 + HGI48_RS18680 0.35 +0.1 4,190,450 + HGI48_RS18680 0.39 +1.5 4,190,451 - HGI48_RS18680 0.39 -0.1 4,190,457 + HGI48_RS18680 0.40 +0.1 4,190,457 + HGI48_RS18680 0.40 -0.2 4,190,457 + HGI48_RS18680 0.40 -0.2 4,190,457 + HGI48_RS18680 0.40 -1.0 4,190,457 + HGI48_RS18680 0.40 +0.3 4,190,457 + HGI48_RS18680 0.40 -1.1 4,190,458 - HGI48_RS18680 0.40 +1.2 4,190,458 - HGI48_RS18680 0.40 -0.2 4,190,458 - HGI48_RS18680 0.40 +0.0 4,190,458 - HGI48_RS18680 0.40 -0.8 4,190,458 - HGI48_RS18680 0.40 -0.7 4,190,563 + HGI48_RS18680 0.55 -0.7 4,190,564 - HGI48_RS18680 0.56 -0.4 4,190,729 + HGI48_RS18680 0.79 -0.6 4,190,729 + HGI48_RS18680 0.79 +0.4 4,190,730 - HGI48_RS18680 0.79 +0.5 4,190,730 - HGI48_RS18680 0.79 -0.0 4,190,730 - HGI48_RS18680 0.79 +0.8 4,190,806 + -0.1 4,190,806 + -1.0 4,190,806 + -1.2 4,190,807 - -0.6 4,190,809 + +0.5 4,190,809 + +0.3 4,190,810 - -0.2 4,190,810 - +0.5 4,190,810 - -0.8 4,190,815 + +0.8 4,190,816 - -1.2 4,190,816 - +0.2 4,190,872 + +0.9 4,190,872 + -0.2 4,190,872 + -0.9 4,190,872 + -0.2 4,190,872 + +1.2 4,190,872 + -1.4 4,190,872 + -1.0 4,190,873 - +0.1 4,190,873 - -2.4 4,190,873 - +0.0 4,190,873 - -1.0 4,190,873 - -0.2 4,190,873 - +0.4 4,190,876 + +0.6 4,190,877 - +1.3 4,190,877 - +2.2 4,190,925 + +0.3 4,190,934 + -1.2 4,190,934 + +0.0 4,190,934 + +1.3 4,190,934 + +1.1 4,190,934 + -1.6 4,190,935 - -0.0 4,190,939 + -0.4 4,190,940 - +0.4 4,190,940 - -0.4 4,190,940 - -1.6 4,191,129 + HGI48_RS18685 0.30 +1.4 4,191,138 + HGI48_RS18685 0.31 -1.7 4,191,153 + HGI48_RS18685 0.33 +0.3 4,191,153 + HGI48_RS18685 0.33 -2.2 4,191,154 - HGI48_RS18685 0.33 +1.4 4,191,177 + HGI48_RS18685 0.36 -0.6
Or see this region's nucleotide sequence