Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18675

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,188,261	+				-0.3
4,188,262	-				+0.8
4,188,319	+				+2.5
4,188,320	-				-0.8
4,188,320	-				+2.3
4,188,325	+				+1.5
4,188,325	+				+0.1
4,188,325	+				-0.5
4,188,325	+				-0.7
4,188,325	+				+0.5
4,188,325	+				-0.4
4,188,326	-				-1.0
4,188,326	-				-0.0
4,188,326	-				+0.0
4,188,328	-				+0.8
4,188,328	-				+0.3
4,188,328	-				+0.3
4,188,340	+				+0.8
4,188,340	+				+0.5
4,188,340	+				+1.1
4,188,340	+				-0.8
4,188,340	+				-0.3
4,188,340	+				-1.2
4,188,340	+				+0.8
4,188,340	+				+1.0
4,188,340	+				+0.3
4,188,340	+				-1.0
4,188,340	+				-0.2
4,188,341	-				+0.5
4,188,341	-				-1.0
4,188,341	-				-0.2
4,188,341	-				+1.5
4,188,341	-				+0.5
4,188,341	-				+2.3
4,188,341	-				-0.2
4,188,341	-				-0.5
4,188,341	-				-1.5
4,188,341	-				-0.0
4,188,341	-				+0.8
4,188,342	+				-0.8
4,188,342	+				+1.5
4,188,342	+				+1.0
4,188,357	-				-0.8
4,188,371	+				-2.2
4,188,371	+				-0.4
4,188,372	-				+1.5
4,188,372	-				-0.7
4,188,508	-				-0.8
4,188,513	+				-0.8
4,188,513	+		HGI48_RS18670	0.13	+0.3
4,188,514	-		HGI48_RS18670	0.13	+0.5
4,188,514	-		HGI48_RS18670	0.13	-1.1
4,188,514	-		HGI48_RS18670	0.13	-0.6
4,188,514	-				-0.2
4,188,514	-		HGI48_RS18670	0.13	-0.3
4,188,625	+		HGI48_RS18670	0.28	-0.7
4,188,626	-		HGI48_RS18670	0.28	+1.0
4,188,626	-		HGI48_RS18670	0.28	-1.2
4,188,642	+		HGI48_RS18670	0.30	-0.8
4,188,674	+		HGI48_RS18670	0.34	-1.0
4,188,674	+		HGI48_RS18670	0.34	-1.7
4,188,675	-		HGI48_RS18670	0.34	+0.4
4,188,675	-		HGI48_RS18670	0.34	-0.2
4,188,675	-		HGI48_RS18670	0.34	+1.0
4,188,675	-		HGI48_RS18670	0.34	-1.8
4,188,675	-		HGI48_RS18670	0.34	-0.6
4,188,675	-		HGI48_RS18670	0.34	-1.2
4,188,694	+		HGI48_RS18670	0.37	-1.6
4,188,694	+		HGI48_RS18670	0.37	-0.5
4,188,780	+		HGI48_RS18670	0.48	-0.4
4,188,781	-		HGI48_RS18670	0.48	-0.7
4,188,834	+		HGI48_RS18670	0.55	-1.8
4,188,834	+		HGI48_RS18670	0.55	-0.5
4,188,834	+		HGI48_RS18670	0.55	+0.3
4,188,835	-		HGI48_RS18670	0.55	-0.6
4,188,835	-				-0.2
4,188,835	-		HGI48_RS18670	0.55	-1.2
4,188,835	-		HGI48_RS18670	0.55	+1.2
4,188,835	-		HGI48_RS18670	0.55	+0.3
4,188,858	+		HGI48_RS18670	0.58	+0.8
4,188,858	+		HGI48_RS18670	0.58	+0.0
4,188,858	+		HGI48_RS18670	0.58	+0.8
4,188,859	-		HGI48_RS18670	0.58	-0.0
4,188,859	-		HGI48_RS18670	0.58	+0.1
4,188,859	-		HGI48_RS18670	0.58	+0.7
4,188,859	-		HGI48_RS18670	0.58	-0.2
4,188,859	-		HGI48_RS18670	0.58	-0.7
4,189,051	-		HGI48_RS18670	0.83	+0.3
4,189,104	+		HGI48_RS18670	0.90	-0.4
4,189,104	+		HGI48_RS18670	0.90	-0.2
4,189,104	+		HGI48_RS18670	0.90	-1.3
4,189,104	+		HGI48_RS18670	0.90	-0.2
4,189,104	+				+1.8
4,189,104	+		HGI48_RS18670	0.90	-1.8
4,189,105	-		HGI48_RS18670	0.90	-0.8
4,189,105	-		HGI48_RS18670	0.90	+0.8
4,189,105	-		HGI48_RS18670	0.90	-0.6
4,189,105	-		HGI48_RS18670	0.90	+0.8
4,189,110	+				-0.5
4,189,111	-				-0.8
4,189,111	-				-1.7
4,189,111	-				-1.6
4,189,130	-				-0.6
4,189,136	+				-0.8
4,189,189	+				-1.0
4,189,189	+				-0.5
4,189,190	-				+1.8
4,189,195	+				+0.8
4,189,195	+				+1.0
4,189,195	+				-0.5
4,189,196	-				+0.4
4,189,196	-				-0.4
4,189,196	-				-2.4
4,189,198	-				+0.0
4,189,198	-				-1.1
4,189,246	-				-0.2
4,189,275	-				+0.4
4,189,299	+		HGI48_RS18675	0.11	+0.9
4,189,300	-		HGI48_RS18675	0.11	-0.2
4,189,300	-		HGI48_RS18675	0.11	-1.8
4,189,412	+				+1.8
4,189,445	+		HGI48_RS18675	0.25	+1.6
4,189,445	+		HGI48_RS18675	0.25	-0.6
4,189,446	-		HGI48_RS18675	0.26	-0.2
4,189,463	-		HGI48_RS18675	0.27	-1.2
4,189,538	+		HGI48_RS18675	0.35	-1.8
4,189,539	-		HGI48_RS18675	0.35	+0.3
4,189,595	-		HGI48_RS18675	0.41	+2.3
4,189,627	+		HGI48_RS18675	0.44	+0.3
4,189,627	+		HGI48_RS18675	0.44	-2.6
4,189,628	-		HGI48_RS18675	0.44	-2.0
4,189,628	-		HGI48_RS18675	0.44	-1.2
4,189,779	-		HGI48_RS18675	0.59	-0.2
4,189,809	+		HGI48_RS18675	0.62	-0.4
4,189,818	+		HGI48_RS18675	0.63	-0.8
4,189,818	+		HGI48_RS18675	0.63	-0.8
4,189,818	+		HGI48_RS18675	0.63	-2.6
4,189,818	+		HGI48_RS18675	0.63	+0.4
4,189,819	-		HGI48_RS18675	0.63	+1.8
4,189,819	-		HGI48_RS18675	0.63	-0.5
4,189,819	-				+1.8
4,189,847	-		HGI48_RS18675	0.66	+1.4
4,189,885	-		HGI48_RS18675	0.70	+3.6
4,189,895	+				+1.8
4,189,895	+		HGI48_RS18675	0.71	-0.2
4,189,895	+		HGI48_RS18675	0.71	+1.6
4,189,896	-		HGI48_RS18675	0.71	+0.0
4,189,896	-		HGI48_RS18675	0.71	+1.0
4,189,896	-		HGI48_RS18675	0.71	+0.4
4,189,896	-		HGI48_RS18675	0.71	+1.0
4,189,896	-		HGI48_RS18675	0.71	+0.2
4,189,896	-		HGI48_RS18675	0.71	-0.2
4,189,899	+		HGI48_RS18675	0.71	-1.4
4,189,899	+		HGI48_RS18675	0.71	-0.8
4,189,900	-		HGI48_RS18675	0.72	-1.2
4,189,900	-		HGI48_RS18675	0.72	-1.6
4,189,900	-		HGI48_RS18675	0.72	-0.6
4,189,979	+				+0.8
4,189,979	+		HGI48_RS18675	0.80	+1.8
4,190,057	+		HGI48_RS18675	0.87	+0.2
4,190,147	+				-0.4
4,190,147	+				-0.6
4,190,147	+				+1.0
4,190,147	+				-0.2
4,190,147	+				-1.0
4,190,147	+				-1.0
4,190,148	-				+0.3
4,190,148	-				-0.2
4,190,148	-				+0.3
4,190,148	-				-0.2
4,190,258	+		HGI48_RS18680	0.12	+0.5
4,190,258	+		HGI48_RS18680	0.12	+0.8
4,190,258	+		HGI48_RS18680	0.12	-1.4
4,190,258	+		HGI48_RS18680	0.12	-0.2
4,190,259	-		HGI48_RS18680	0.12	+0.1
4,190,359	+		HGI48_RS18680	0.26	-0.7
4,190,360	-		HGI48_RS18680	0.26	-1.7
4,190,360	-		HGI48_RS18680	0.26	+1.6
4,190,360	-		HGI48_RS18680	0.26	+0.9
4,190,418	+		HGI48_RS18680	0.35	+0.1
4,190,450	+		HGI48_RS18680	0.39	+1.5
4,190,451	-		HGI48_RS18680	0.39	-0.1
4,190,457	+		HGI48_RS18680	0.40	+0.1
4,190,457	+		HGI48_RS18680	0.40	-0.2
4,190,457	+		HGI48_RS18680	0.40	-0.2
4,190,457	+		HGI48_RS18680	0.40	-1.0
4,190,457	+		HGI48_RS18680	0.40	+0.3
4,190,457	+		HGI48_RS18680	0.40	-1.1
4,190,458	-		HGI48_RS18680	0.40	+1.2
4,190,458	-		HGI48_RS18680	0.40	-0.2
4,190,458	-		HGI48_RS18680	0.40	+0.0
4,190,458	-		HGI48_RS18680	0.40	-0.8
4,190,458	-		HGI48_RS18680	0.40	-0.7
4,190,563	+		HGI48_RS18680	0.55	-0.7
4,190,564	-		HGI48_RS18680	0.56	-0.4
4,190,729	+		HGI48_RS18680	0.79	-0.6
4,190,729	+		HGI48_RS18680	0.79	+0.4
4,190,730	-		HGI48_RS18680	0.79	+0.5
4,190,730	-		HGI48_RS18680	0.79	-0.0
4,190,730	-		HGI48_RS18680	0.79	+0.8
4,190,806	+				-0.1
4,190,806	+				-1.0
4,190,806	+				-1.2
4,190,807	-				-0.6
4,190,809	+				+0.5
4,190,809	+				+0.3
4,190,810	-				-0.2
4,190,810	-				+0.5
4,190,810	-				-0.8
4,190,815	+				+0.8
4,190,816	-				-1.2
4,190,816	-				+0.2
4,190,872	+				+0.9
4,190,872	+				-0.2
4,190,872	+				-0.9
4,190,872	+				-0.2
4,190,872	+				+1.2
4,190,872	+				-1.4
4,190,872	+				-1.0
4,190,873	-				+0.1
4,190,873	-				-2.4
4,190,873	-				+0.0
4,190,873	-				-1.0
4,190,873	-				-0.2
4,190,873	-				+0.4
4,190,876	+				+0.6
4,190,877	-				+1.3
4,190,877	-				+2.2
4,190,925	+				+0.3
4,190,934	+				-1.2
4,190,934	+				+0.0
4,190,934	+				+1.3
4,190,934	+				+1.1
4,190,934	+				-1.6
4,190,935	-				-0.0
4,190,939	+				-0.4
4,190,940	-				+0.4
4,190,940	-				-0.4
4,190,940	-				-1.6
4,191,129	+		HGI48_RS18685	0.30	+1.4
4,191,138	+		HGI48_RS18685	0.31	-1.7
4,191,153	+		HGI48_RS18685	0.33	+0.3
4,191,153	+		HGI48_RS18685	0.33	-2.2
4,191,154	-		HGI48_RS18685	0.33	+1.4
4,191,177	+		HGI48_RS18685	0.36	-0.6