Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18595

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,173,461	-		HGI48_RS18590	0.32	-0.2
4,173,476	+		HGI48_RS18590	0.33	-0.5
4,173,476	+		HGI48_RS18590	0.33	-0.3
4,173,476	+		HGI48_RS18590	0.33	-0.0
4,173,476	+		HGI48_RS18590	0.33	-1.6
4,173,477	-		HGI48_RS18590	0.33	-0.2
4,173,477	-				-0.8
4,173,477	-		HGI48_RS18590	0.33	+0.3
4,173,477	-		HGI48_RS18590	0.33	-1.2
4,173,477	-		HGI48_RS18590	0.33	+1.6
4,173,487	+		HGI48_RS18590	0.34	+1.2
4,173,487	+		HGI48_RS18590	0.34	+0.0
4,173,487	+		HGI48_RS18590	0.34	-0.0
4,173,500	+		HGI48_RS18590	0.35	-1.2
4,173,501	-		HGI48_RS18590	0.35	-0.6
4,173,501	-		HGI48_RS18590	0.35	-1.8
4,173,508	+		HGI48_RS18590	0.35	-0.9
4,173,508	+		HGI48_RS18590	0.35	-0.0
4,173,508	+		HGI48_RS18590	0.35	-1.6
4,173,508	+		HGI48_RS18590	0.35	-0.8
4,173,508	+		HGI48_RS18590	0.35	-0.2
4,173,508	+		HGI48_RS18590	0.35	+0.3
4,173,509	-		HGI48_RS18590	0.35	-0.2
4,173,509	-		HGI48_RS18590	0.35	-0.6
4,173,509	-		HGI48_RS18590	0.35	-0.5
4,173,509	-		HGI48_RS18590	0.35	-0.5
4,173,509	-		HGI48_RS18590	0.35	-0.5
4,173,509	-		HGI48_RS18590	0.35	+0.5
4,173,509	-		HGI48_RS18590	0.35	-0.5
4,173,641	+		HGI48_RS18590	0.45	-0.1
4,173,641	+		HGI48_RS18590	0.45	+0.2
4,173,642	-		HGI48_RS18590	0.45	+0.2
4,173,642	-		HGI48_RS18590	0.45	+1.1
4,173,642	-		HGI48_RS18590	0.45	-1.6
4,173,642	-		HGI48_RS18590	0.45	-0.6
4,173,642	-		HGI48_RS18590	0.45	-0.4
4,173,711	+		HGI48_RS18590	0.50	-1.0
4,173,711	+		HGI48_RS18590	0.50	-0.5
4,173,711	+				+1.8
4,173,712	-				+1.2
4,173,712	-		HGI48_RS18590	0.50	-1.9
4,173,712	-		HGI48_RS18590	0.50	-0.0
4,173,729	+		HGI48_RS18590	0.51	+2.0
4,173,729	+		HGI48_RS18590	0.51	-0.8
4,173,729	+		HGI48_RS18590	0.51	-0.2
4,173,729	+		HGI48_RS18590	0.51	-1.0
4,173,729	+		HGI48_RS18590	0.51	+0.3
4,173,730	-		HGI48_RS18590	0.51	+1.0
4,173,730	-		HGI48_RS18590	0.51	-0.8
4,173,730	-		HGI48_RS18590	0.51	-2.0
4,173,730	-				+0.8
4,173,730	-		HGI48_RS18590	0.51	+0.3
4,173,730	-		HGI48_RS18590	0.51	-1.2
4,173,735	+		HGI48_RS18590	0.52	-0.1
4,173,736	-		HGI48_RS18590	0.52	+0.3
4,173,736	-		HGI48_RS18590	0.52	+0.1
4,173,736	-		HGI48_RS18590	0.52	+2.3
4,173,744	+		HGI48_RS18590	0.52	-0.2
4,173,745	-		HGI48_RS18590	0.52	+0.4
4,173,788	-		HGI48_RS18590	0.56	-1.8
4,173,793	-		HGI48_RS18590	0.56	+0.3
4,173,793	-		HGI48_RS18590	0.56	-0.8
4,173,817	+				-0.2
4,173,820	+		HGI48_RS18590	0.58	-0.7
4,173,820	+		HGI48_RS18590	0.58	-1.2
4,173,820	+				-0.8
4,173,820	+		HGI48_RS18590	0.58	+0.3
4,173,820	+		HGI48_RS18590	0.58	-0.1
4,173,820	+		HGI48_RS18590	0.58	-0.0
4,173,820	+		HGI48_RS18590	0.58	-0.3
4,173,821	-		HGI48_RS18590	0.58	-2.6
4,173,821	-		HGI48_RS18590	0.58	-0.7
4,173,821	-		HGI48_RS18590	0.58	-2.4
4,173,903	+		HGI48_RS18590	0.64	-0.1
4,173,904	-				+1.5
4,173,912	+		HGI48_RS18590	0.65	+1.0
4,174,000	+		HGI48_RS18590	0.71	+1.2
4,174,001	-		HGI48_RS18590	0.71	+0.4
4,174,001	-		HGI48_RS18590	0.71	+0.8
4,174,001	-		HGI48_RS18590	0.71	+0.6
4,174,001	-		HGI48_RS18590	0.71	-0.2
4,174,027	+		HGI48_RS18590	0.73	+0.1
4,174,059	+		HGI48_RS18590	0.75	+0.1
4,174,079	+		HGI48_RS18590	0.77	+2.5
4,174,095	+		HGI48_RS18590	0.78	+0.3
4,174,095	+		HGI48_RS18590	0.78	-1.8
4,174,095	+				+0.2
4,174,095	+				+0.8
4,174,096	-		HGI48_RS18590	0.78	+1.9
4,174,217	-		HGI48_RS18590	0.87	-1.0
4,174,217	-		HGI48_RS18590	0.87	-1.2
4,174,217	-				+1.8
4,174,217	-		HGI48_RS18590	0.87	+0.1
4,174,243	+		HGI48_RS18590	0.89	+0.0
4,174,244	-		HGI48_RS18590	0.89	-0.8
4,174,244	-		HGI48_RS18590	0.89	-0.2
4,174,267	+				+0.0
4,174,268	-				+0.8
4,174,268	-				+2.3
4,174,279	-				+0.3
4,174,279	-				+0.4
4,174,329	-				+1.4
4,174,352	+				+0.0
4,174,352	+				-0.2
4,174,352	+				-1.4
4,174,399	+				-0.8
4,174,400	-				+0.4
4,174,416	-				-0.7
4,174,431	+				-0.8
4,174,432	-				-1.7
4,174,432	-				-0.2
4,174,432	-				+1.0
4,174,462	+				-0.0
4,174,463	-				+2.1
4,174,634	+		HGI48_RS18595	0.18	+0.1
4,174,634	+		HGI48_RS18595	0.18	-1.2
4,174,634	+		HGI48_RS18595	0.18	+1.1
4,174,634	+		HGI48_RS18595	0.18	+1.5
4,174,635	-		HGI48_RS18595	0.18	-1.6
4,174,635	-		HGI48_RS18595	0.18	-0.3
4,174,635	-		HGI48_RS18595	0.18	+0.3
4,174,635	-		HGI48_RS18595	0.18	-0.2
4,174,652	+		HGI48_RS18595	0.19	-1.6
4,174,656	-		HGI48_RS18595	0.20	-0.8
4,174,656	-				+2.8
4,174,683	+		HGI48_RS18595	0.22	+0.8
4,174,735	-				-0.2
4,174,840	+		HGI48_RS18595	0.36	+0.3
4,174,842	+				+2.1
4,174,842	+				-0.2
4,174,843	-				-0.8
4,174,920	+		HGI48_RS18595	0.43	-1.8
4,174,945	-		HGI48_RS18595	0.46	-0.4
4,174,956	+		HGI48_RS18595	0.47	-2.0
4,174,956	+		HGI48_RS18595	0.47	-3.0
4,174,957	-		HGI48_RS18595	0.47	+0.9
4,174,965	+		HGI48_RS18595	0.47	-0.2
4,174,966	-		HGI48_RS18595	0.48	+0.0
4,174,966	-				+1.2
4,174,966	-		HGI48_RS18595	0.48	+0.3
4,174,966	-		HGI48_RS18595	0.48	+0.6
4,174,966	-				-0.2
4,175,031	-		HGI48_RS18595	0.53	-0.2
4,175,082	+		HGI48_RS18595	0.58	+0.4
4,175,082	+		HGI48_RS18595	0.58	+1.0
4,175,083	-		HGI48_RS18595	0.58	+1.9
4,175,083	-		HGI48_RS18595	0.58	-1.8
4,175,083	-		HGI48_RS18595	0.58	+0.3
4,175,083	-		HGI48_RS18595	0.58	+0.8
4,175,131	-		HGI48_RS18595	0.62	+0.1
4,175,131	-		HGI48_RS18595	0.62	+1.5
4,175,209	+		HGI48_RS18595	0.69	+1.3
4,175,210	-		HGI48_RS18595	0.69	-0.1
4,175,210	-				+0.8
4,175,210	-		HGI48_RS18595	0.69	-0.0
4,175,312	+		HGI48_RS18595	0.78	-1.2
4,175,347	+		HGI48_RS18595	0.82	-0.2
4,175,348	-		HGI48_RS18595	0.82	+0.5
4,175,384	-		HGI48_RS18595	0.85	-0.2
4,175,479	-				-0.8
4,175,540	-				-1.8
4,175,540	-				-1.2
4,175,545	+				+0.8
4,175,546	-				+1.3
4,175,546	-				-0.2
4,175,685	+		HGI48_RS18600	0.11	-1.7
4,175,742	+				+2.3
4,175,743	-		HGI48_RS18600	0.18	-0.6
4,175,765	+		HGI48_RS18600	0.21	-0.8
4,175,785	-		HGI48_RS18600	0.23	+0.3
4,175,823	-		HGI48_RS18600	0.28	-0.9
4,175,832	-		HGI48_RS18600	0.29	-1.6
4,175,842	+		HGI48_RS18600	0.30	-0.9
4,175,842	+		HGI48_RS18600	0.30	-1.6
4,175,843	-		HGI48_RS18600	0.31	-0.8
4,175,843	-		HGI48_RS18600	0.31	-0.9
4,175,843	-				-0.8
4,175,844	+		HGI48_RS18600	0.31	-2.0
4,175,844	+		HGI48_RS18600	0.31	-1.8
4,175,844	+		HGI48_RS18600	0.31	-1.0
4,175,844	+		HGI48_RS18600	0.31	-1.0
4,175,844	+				+0.8
4,175,844	+		HGI48_RS18600	0.31	-2.8
4,175,845	-		HGI48_RS18600	0.31	-0.6
4,175,845	-				-0.8
4,175,847	-				-0.8
4,175,847	-		HGI48_RS18600	0.31	-1.6
4,175,900	+				+0.8
4,175,901	-		HGI48_RS18600	0.38	-0.6
4,175,989	-		HGI48_RS18600	0.49	+0.8
4,176,048	-		HGI48_RS18600	0.57	+0.3
4,176,057	-				+0.8
4,176,095	+		HGI48_RS18600	0.62	+0.4
4,176,104	+		HGI48_RS18600	0.64	-1.2
4,176,105	-				+0.2
4,176,164	-		HGI48_RS18600	0.71	-0.1
4,176,333	+				-0.6
4,176,388	+				-0.8
4,176,391	+				+0.3
4,176,442	+				-1.5
4,176,443	-				-2.6
4,176,443	-				-2.0
4,176,520	+		HGI48_RS18605	0.17	-1.8
4,176,521	-		HGI48_RS18605	0.17	-0.0