Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18550

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,161,788	+		HGI48_RS18540	0.71	-1.2
4,161,788	+		HGI48_RS18540	0.71	+0.2
4,161,789	-		HGI48_RS18540	0.72	+0.6
4,161,827	-		HGI48_RS18540	0.74	-0.2
4,161,827	-		HGI48_RS18540	0.74	-0.6
4,161,883	+				+0.8
4,161,884	-		HGI48_RS18540	0.79	+0.6
4,161,884	-		HGI48_RS18540	0.79	+0.1
4,161,988	-		HGI48_RS18540	0.87	-0.7
4,161,988	-		HGI48_RS18540	0.87	+0.3
4,162,105	-				+0.9
4,162,109	-				+0.0
4,162,109	-				+0.8
4,162,109	-				+1.5
4,162,115	+				-0.9
4,162,115	+				-0.7
4,162,115	+				+0.8
4,162,116	-				-1.1
4,162,116	-				-0.1
4,162,116	-				-1.1
4,162,116	-				+1.0
4,162,118	+				-0.2
4,162,118	+				-0.2
4,162,118	+				+0.2
4,162,119	-				-0.4
4,162,119	-				+0.8
4,162,119	-				-0.2
4,162,119	-				-0.6
4,162,140	+				-1.9
4,162,190	-				-0.8
4,162,304	+		HGI48_RS18545	0.20	+1.3
4,162,304	+		HGI48_RS18545	0.20	+0.3
4,162,304	+		HGI48_RS18545	0.20	-0.2
4,162,305	-		HGI48_RS18545	0.21	+0.4
4,162,305	-		HGI48_RS18545	0.21	+0.2
4,162,305	-		HGI48_RS18545	0.21	-1.2
4,162,305	-		HGI48_RS18545	0.21	-0.2
4,162,305	-		HGI48_RS18545	0.21	+1.8
4,162,305	-		HGI48_RS18545	0.21	+1.5
4,162,309	-		HGI48_RS18545	0.22	-1.6
4,162,309	-		HGI48_RS18545	0.22	+1.5
4,162,309	-				+2.2
4,162,309	-		HGI48_RS18545	0.22	+0.1
4,162,309	-		HGI48_RS18545	0.22	+0.1
4,162,323	+		HGI48_RS18545	0.27	-3.6
4,162,323	+				+1.8
4,162,324	-		HGI48_RS18545	0.27	+2.1
4,162,324	-		HGI48_RS18545	0.27	+1.0
4,162,324	-		HGI48_RS18545	0.27	+0.4
4,162,324	-		HGI48_RS18545	0.27	+0.5
4,162,326	+		HGI48_RS18545	0.28	+0.3
4,162,327	-		HGI48_RS18545	0.28	+0.5
4,162,327	-		HGI48_RS18545	0.28	+1.1
4,162,327	-		HGI48_RS18545	0.28	+1.2
4,162,327	-		HGI48_RS18545	0.28	+2.2
4,162,329	+				+1.8
4,162,330	-		HGI48_RS18545	0.29	+1.2
4,162,330	-		HGI48_RS18545	0.29	+1.6
4,162,330	-		HGI48_RS18545	0.29	+1.9
4,162,330	-		HGI48_RS18545	0.29	+0.9
4,162,330	-		HGI48_RS18545	0.29	+1.4
4,162,568	-				+1.1
4,162,573	+				-2.0
4,162,595	-				+1.6
4,162,600	-				+0.1
4,162,600	-				-1.6
4,162,608	-				-0.8
4,162,655	-				-0.6
4,162,655	-				-0.0
4,162,667	-				-0.4
4,162,672	-				+0.2
4,162,684	-				+1.1
4,162,688	+				+0.8
4,162,688	+				+0.0
4,162,688	+				-1.6
4,162,688	+				+0.8
4,162,688	+				-0.9
4,162,688	+				+1.8
4,162,688	+				-1.2
4,162,688	+				+1.9
4,162,688	+				-0.4
4,162,688	+				+1.8
4,162,689	-				-0.4
4,162,689	-				+2.2
4,162,689	-				-0.6
4,162,689	-				+0.0
4,162,689	-				-2.1
4,162,689	-				+0.8
4,162,689	-				-0.3
4,162,689	-				-0.8
4,162,689	-				-0.2
4,162,689	-				+0.5
4,162,824	-		HGI48_RS18550	0.15	-0.4
4,162,839	-		HGI48_RS18550	0.16	-1.8
4,162,859	+		HGI48_RS18550	0.18	-1.6
4,162,859	+		HGI48_RS18550	0.18	-1.3
4,162,859	+		HGI48_RS18550	0.18	-0.8
4,162,859	+		HGI48_RS18550	0.18	+0.8
4,162,860	-		HGI48_RS18550	0.18	-0.6
4,163,084	-				-0.2
4,163,393	+		HGI48_RS18550	0.75	-1.8
4,163,586	+				-0.8
4,163,667	+				-0.7
4,163,667	+				+0.2
4,163,667	+				+0.5
4,163,667	+				-0.7
4,163,667	+				-2.7
4,163,667	+				-0.5
4,163,667	+				+0.0
4,163,667	+				+0.5
4,163,667	+				-2.8
4,163,668	-				-0.2
4,163,668	-				+0.3
4,163,668	-				+0.8
4,163,668	-				-2.4
4,163,668	-				-1.2
4,163,668	-				-0.8
4,163,668	-				-1.1
4,163,668	-				-0.8
4,163,668	-				-0.8
4,163,668	-				-1.4
4,163,668	-				+0.1
4,163,668	-				-0.8
4,163,668	-				-0.6
4,163,668	-				-2.4
4,163,668	-				+1.3
4,163,668	-				+0.3
4,163,668	-				-0.1
4,163,668	-				+0.5
4,163,668	-				+0.3
4,163,669	+				+0.8
4,163,670	-				+0.1
4,163,670	-				-2.2
4,163,670	-				-0.2
4,163,670	-				+0.3
4,163,670	-				+0.9
4,163,718	-				-0.2
4,163,718	-				-0.6
4,163,735	+				-0.9
4,163,736	-				+1.2
4,163,906	-		HGI48_RS18555	0.15	-2.1
4,163,906	-		HGI48_RS18555	0.15	-0.3
4,163,933	+		HGI48_RS18555	0.16	+0.1
4,163,934	-		HGI48_RS18555	0.16	-1.6
4,164,078	+				-0.8
4,164,138	+		HGI48_RS18555	0.27	+1.2
4,164,138	+				+2.1
4,164,138	+		HGI48_RS18555	0.27	+0.2
4,164,138	+		HGI48_RS18555	0.27	-1.8
4,164,139	-		HGI48_RS18555	0.27	+1.1
4,164,139	-		HGI48_RS18555	0.27	+0.1
4,164,151	-		HGI48_RS18555	0.27	-0.5
4,164,152	+		HGI48_RS18555	0.28	+1.5
4,164,152	+		HGI48_RS18555	0.28	+0.3
4,164,152	+		HGI48_RS18555	0.28	+0.9
4,164,153	-		HGI48_RS18555	0.28	-0.8
4,164,153	-		HGI48_RS18555	0.28	+0.0
4,164,153	-		HGI48_RS18555	0.28	-1.6
4,164,153	-		HGI48_RS18555	0.28	+0.8
4,164,153	-				+1.3
4,164,250	+		HGI48_RS18555	0.33	-1.4
4,164,250	+		HGI48_RS18555	0.33	+0.8
4,164,312	-		HGI48_RS18555	0.36	-1.4
4,164,312	-		HGI48_RS18555	0.36	-0.7
4,164,321	+		HGI48_RS18555	0.36	-1.2
4,164,361	+				+2.0
4,164,361	+		HGI48_RS18555	0.38	+1.5
4,164,363	+		HGI48_RS18555	0.38	-0.6
4,164,363	+		HGI48_RS18555	0.38	+0.2
4,164,364	-		HGI48_RS18555	0.39	-1.2
4,164,566	+		HGI48_RS18555	0.49	+0.1
4,164,585	+		HGI48_RS18555	0.50	-0.1
4,164,586	-				+0.8
4,164,586	-				+0.2
4,164,586	-		HGI48_RS18555	0.50	-1.2
4,164,589	+		HGI48_RS18555	0.50	+0.1
4,164,589	+		HGI48_RS18555	0.50	-0.1
4,164,589	+		HGI48_RS18555	0.50	-0.2
4,164,589	+		HGI48_RS18555	0.50	+0.1
4,164,589	+		HGI48_RS18555	0.50	-0.5
4,164,590	-		HGI48_RS18555	0.50	-1.2
4,164,590	-		HGI48_RS18555	0.50	+0.4
4,164,590	-		HGI48_RS18555	0.50	+1.8
4,164,590	-		HGI48_RS18555	0.50	-0.8