Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18490

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,150,397	-				-1.6
4,150,474	-				+0.6
4,150,512	-				-1.1
4,150,512	-				+2.1
4,150,512	-				+2.1
4,150,540	+				-0.1
4,150,540	+				+0.2
4,150,541	-				+0.7
4,150,541	-				+0.0
4,150,543	+				+0.7
4,150,543	+				+0.6
4,150,544	-				+2.9
4,150,595	+		HGI48_RS18485	0.12	+3.0
4,150,650	+				+1.5
4,150,650	+		HGI48_RS18485	0.20	+0.0
4,150,661	+		HGI48_RS18485	0.21	+0.3
4,150,661	+		HGI48_RS18485	0.21	-0.6
4,150,661	+		HGI48_RS18485	0.21	-0.8
4,150,661	+		HGI48_RS18485	0.21	-0.1
4,150,661	+		HGI48_RS18485	0.21	-1.8
4,150,662	-		HGI48_RS18485	0.21	-0.5
4,150,765	+		HGI48_RS18485	0.36	+0.5
4,150,765	+		HGI48_RS18485	0.36	-1.0
4,150,765	+		HGI48_RS18485	0.36	+0.5
4,150,765	+		HGI48_RS18485	0.36	-0.3
4,150,765	+		HGI48_RS18485	0.36	+0.6
4,150,766	-		HGI48_RS18485	0.36	+0.4
4,150,766	-		HGI48_RS18485	0.36	+0.7
4,150,867	+		HGI48_RS18485	0.51	+0.7
4,150,867	+		HGI48_RS18485	0.51	+1.5
4,150,867	+		HGI48_RS18485	0.51	+1.3
4,150,867	+		HGI48_RS18485	0.51	+0.5
4,150,867	+		HGI48_RS18485	0.51	-0.0
4,150,868	-		HGI48_RS18485	0.51	+0.2
4,150,868	-		HGI48_RS18485	0.51	-0.4
4,150,868	-		HGI48_RS18485	0.51	-1.4
4,150,868	-		HGI48_RS18485	0.51	-0.1
4,150,868	-				-0.3
4,150,868	-		HGI48_RS18485	0.51	+0.7
4,150,919	+		HGI48_RS18485	0.58	-0.3
4,150,920	-		HGI48_RS18485	0.58	+1.2
4,150,920	-		HGI48_RS18485	0.58	+0.5
4,150,920	-		HGI48_RS18485	0.58	+0.0
4,150,920	-		HGI48_RS18485	0.58	+2.1
4,150,920	-		HGI48_RS18485	0.58	-0.8
4,150,920	-		HGI48_RS18485	0.58	-0.1
4,150,923	+				+0.2
4,150,923	+		HGI48_RS18485	0.59	-0.3
4,150,924	-		HGI48_RS18485	0.59	-1.3
4,150,924	-		HGI48_RS18485	0.59	+0.3
4,150,924	-		HGI48_RS18485	0.59	-0.1
4,150,924	-		HGI48_RS18485	0.59	-1.0
4,151,037	+		HGI48_RS18485	0.75	-0.5
4,151,037	+		HGI48_RS18485	0.75	+1.2
4,151,037	+		HGI48_RS18485	0.75	-0.3
4,151,037	+		HGI48_RS18485	0.75	-1.3
4,151,037	+		HGI48_RS18485	0.75	-0.1
4,151,037	+		HGI48_RS18485	0.75	+1.9
4,151,037	+		HGI48_RS18485	0.75	+0.2
4,151,037	+				+1.5
4,151,038	-				+1.7
4,151,038	-		HGI48_RS18485	0.75	-0.3
4,151,038	-				+1.5
4,151,038	-		HGI48_RS18485	0.75	+0.2
4,151,038	-		HGI48_RS18485	0.75	-1.6
4,151,038	-		HGI48_RS18485	0.75	-0.8
4,151,038	-		HGI48_RS18485	0.75	+0.1
4,151,038	-		HGI48_RS18485	0.75	+0.3
4,151,038	-		HGI48_RS18485	0.75	+1.0
4,151,038	-				-0.3
4,151,038	-		HGI48_RS18485	0.75	-0.6
4,151,038	-		HGI48_RS18485	0.75	-0.1
4,151,038	-		HGI48_RS18485	0.75	-0.8
4,151,043	+		HGI48_RS18485	0.76	-0.3
4,151,043	+		HGI48_RS18485	0.76	+1.2
4,151,043	+		HGI48_RS18485	0.76	+1.1
4,151,043	+		HGI48_RS18485	0.76	-0.1
4,151,043	+		HGI48_RS18485	0.76	+0.7
4,151,043	+		HGI48_RS18485	0.76	-0.3
4,151,043	+		HGI48_RS18485	0.76	+0.5
4,151,044	-		HGI48_RS18485	0.76	+0.2
4,151,044	-		HGI48_RS18485	0.76	+0.0
4,151,044	-		HGI48_RS18485	0.76	+0.9
4,151,044	-		HGI48_RS18485	0.76	-0.7
4,151,044	-		HGI48_RS18485	0.76	-0.7
4,151,044	-		HGI48_RS18485	0.76	-1.6
4,151,044	-		HGI48_RS18485	0.76	+1.3
4,151,044	-		HGI48_RS18485	0.76	+0.6
4,151,044	-		HGI48_RS18485	0.76	+0.1
4,151,045	+		HGI48_RS18485	0.76	-1.8
4,151,046	-				-0.3
4,151,046	-		HGI48_RS18485	0.76	+1.3
4,151,138	+				+1.2
4,151,184	+				-0.8
4,151,184	+				+1.0
4,151,184	+				+0.2
4,151,185	-				+0.3
4,151,185	-				-1.3
4,151,185	-				-1.1
4,151,221	+				-1.3
4,151,222	-				+0.3
4,151,224	+				-1.3
4,151,224	+				-1.1
4,151,224	+				-0.5
4,151,224	+				+0.3
4,151,224	+				-0.4
4,151,225	-				+2.2
4,151,225	-				+0.2
4,151,225	-				+1.3
4,151,225	-				-2.0
4,151,225	-				+0.3
4,151,225	-				+1.0
4,151,241	+				-0.4
4,151,241	+				-1.6
4,151,241	+				+0.4
4,151,241	+				-0.4
4,151,242	-				-2.0
4,151,242	-				-1.2
4,151,242	-				-3.1
4,151,243	+				+0.7
4,151,244	-				-1.8
4,151,244	-				+0.2
4,151,244	-				-0.5
4,151,244	-				+0.5
4,151,244	-				+1.0
4,151,244	-				+0.4
4,151,322	+				-1.8
4,151,322	+				-0.6
4,151,322	+				+0.9
4,151,322	+				-0.3
4,151,323	-				-0.2
4,151,333	+				+0.2
4,151,334	-				-0.5
4,151,334	-				-1.5
4,151,345	+				-0.2
4,151,346	-				-0.6
4,151,486	+		HGI48_RS18490	0.20	+1.6
4,151,486	+		HGI48_RS18490	0.20	+0.6
4,151,486	+		HGI48_RS18490	0.20	-0.7
4,151,486	+		HGI48_RS18490	0.20	-0.6
4,151,487	-		HGI48_RS18490	0.20	-1.4
4,151,487	-		HGI48_RS18490	0.20	+0.3
4,151,537	-		HGI48_RS18490	0.27	-0.9
4,151,840	+		HGI48_RS18490	0.68	+0.6
4,151,840	+		HGI48_RS18490	0.68	+1.1
4,151,841	-		HGI48_RS18490	0.68	-0.9
4,151,977	-		HGI48_RS18490	0.87	+1.6
4,151,977	-				+1.8
4,151,977	-		HGI48_RS18490	0.87	+0.0
4,151,977	-		HGI48_RS18490	0.87	+1.2
4,151,982	+		HGI48_RS18490	0.88	+1.0
4,151,982	+		HGI48_RS18490	0.88	-1.6
4,151,982	+		HGI48_RS18490	0.88	+0.3
4,151,983	-		HGI48_RS18490	0.88	-0.2
4,152,050	+				+0.3
4,152,051	-				-1.3
4,152,051	-				-1.6
4,152,070	+				-0.2
4,152,079	+				-1.1
4,152,079	+				-0.8
4,152,080	-				-0.2
4,152,080	-				-0.1
4,152,090	-				+0.3
4,152,192	+		HGI48_RS18495	0.11	+0.0
4,152,192	+				-0.8
4,152,192	+		HGI48_RS18495	0.11	-0.8
4,152,192	+		HGI48_RS18495	0.11	+0.5
4,152,192	+		HGI48_RS18495	0.11	-0.6
4,152,192	+				-0.3
4,152,192	+				+2.2
4,152,193	-		HGI48_RS18495	0.11	+0.0
4,152,193	-		HGI48_RS18495	0.11	+1.9
4,152,193	-		HGI48_RS18495	0.11	+0.4
4,152,193	-				+1.3
4,152,193	-		HGI48_RS18495	0.11	+1.3
4,152,193	-		HGI48_RS18495	0.11	+1.1
4,152,194	+		HGI48_RS18495	0.12	-1.3
4,152,213	+		HGI48_RS18495	0.14	-0.5
4,152,213	+		HGI48_RS18495	0.14	+0.4
4,152,214	-		HGI48_RS18495	0.14	-1.4
4,152,249	-		HGI48_RS18495	0.17	-1.5
4,152,265	-		HGI48_RS18495	0.19	-1.4
4,152,265	-		HGI48_RS18495	0.19	+0.9
4,152,271	-		HGI48_RS18495	0.20	-0.5
4,152,271	-				-0.3
4,152,283	-		HGI48_RS18495	0.21	-0.5
4,152,372	+		HGI48_RS18495	0.30	-0.6
4,152,372	+		HGI48_RS18495	0.30	+0.2
4,152,373	-		HGI48_RS18495	0.30	-1.3
4,152,381	+		HGI48_RS18495	0.31	-0.4
4,152,381	+		HGI48_RS18495	0.31	+0.7
4,152,381	+		HGI48_RS18495	0.31	-0.6
4,152,382	-				+1.2
4,152,382	-		HGI48_RS18495	0.31	+0.2
4,152,382	-		HGI48_RS18495	0.31	+1.7
4,152,382	-		HGI48_RS18495	0.31	+0.7
4,152,382	-		HGI48_RS18495	0.31	-0.6
4,152,383	+		HGI48_RS18495	0.31	-1.3
4,152,383	+		HGI48_RS18495	0.31	-0.7
4,152,744	+		HGI48_RS18495	0.69	-1.3
4,152,851	+		HGI48_RS18495	0.80	-0.9
4,153,069	+				-0.4
4,153,069	+				+0.8
4,153,069	+				-0.3
4,153,069	+				-1.6
4,153,069	+				-1.8
4,153,069	+				-0.8
4,153,070	-				+1.4