Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18060

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,052,362	+		HGI48_RS18055	0.37	-1.3
4,052,371	+		HGI48_RS18055	0.38	-1.1
4,052,518	+		HGI48_RS18055	0.47	-2.3
4,052,542	-		HGI48_RS18055	0.49	-1.2
4,052,542	-		HGI48_RS18055	0.49	-0.9
4,052,647	+		HGI48_RS18055	0.55	-0.8
4,052,647	+		HGI48_RS18055	0.55	-1.0
4,052,647	+		HGI48_RS18055	0.55	-0.3
4,052,648	-		HGI48_RS18055	0.55	-1.4
4,052,813	+		HGI48_RS18055	0.66	-2.3
4,052,813	+				-0.9
4,052,814	-		HGI48_RS18055	0.66	-1.9
4,052,815	+		HGI48_RS18055	0.66	-1.6
4,052,815	+		HGI48_RS18055	0.66	+0.9
4,052,815	+		HGI48_RS18055	0.66	-1.3
4,052,816	-		HGI48_RS18055	0.66	-0.3
4,052,816	-		HGI48_RS18055	0.66	-0.6
4,052,816	-		HGI48_RS18055	0.66	+0.9
4,052,816	-		HGI48_RS18055	0.66	-1.3
4,052,816	-		HGI48_RS18055	0.66	-0.6
4,052,816	-				-0.9
4,052,816	-		HGI48_RS18055	0.66	-0.3
4,052,816	-		HGI48_RS18055	0.66	+0.9
4,052,828	+		HGI48_RS18055	0.67	-0.3
4,052,828	+		HGI48_RS18055	0.67	+0.4
4,052,828	+		HGI48_RS18055	0.67	-1.0
4,052,829	-		HGI48_RS18055	0.67	+0.2
4,052,846	+		HGI48_RS18055	0.68	-1.7
4,052,894	+		HGI48_RS18055	0.71	-1.1
4,052,894	+		HGI48_RS18055	0.71	-0.0
4,052,895	-		HGI48_RS18055	0.71	-1.6
4,052,895	-		HGI48_RS18055	0.71	+0.5
4,052,895	-		HGI48_RS18055	0.71	+0.4
4,052,949	-		HGI48_RS18055	0.74	-1.6
4,052,960	+		HGI48_RS18055	0.75	-1.9
4,052,961	-		HGI48_RS18055	0.75	+1.2
4,052,965	+				-0.9
4,052,966	-		HGI48_RS18055	0.75	-1.0
4,052,966	-		HGI48_RS18055	0.75	+0.2
4,052,983	+		HGI48_RS18055	0.77	-0.5
4,052,983	+		HGI48_RS18055	0.77	-0.5
4,052,983	+		HGI48_RS18055	0.77	-2.1
4,052,983	+		HGI48_RS18055	0.77	+0.7
4,052,984	-		HGI48_RS18055	0.77	-0.9
4,052,984	-		HGI48_RS18055	0.77	-1.6
4,052,984	-				+0.7
4,052,984	-		HGI48_RS18055	0.77	-0.3
4,052,984	-		HGI48_RS18055	0.77	-2.0
4,052,984	-		HGI48_RS18055	0.77	-0.8
4,052,984	-		HGI48_RS18055	0.77	+0.5
4,052,984	-				+0.7
4,053,075	-		HGI48_RS18055	0.82	-1.4
4,053,123	-		HGI48_RS18055	0.85	-0.9
4,053,123	-		HGI48_RS18055	0.85	-1.0
4,053,261	+				+0.5
4,053,261	+				+0.3
4,053,261	+				-1.6
4,053,261	+				-1.9
4,053,262	-				-0.3
4,053,262	-				-0.4
4,053,262	-				+0.0
4,053,262	-				+0.7
4,053,265	-				-1.9
4,053,265	-				-0.7
4,053,364	+				+1.4
4,053,364	+				+0.1
4,053,364	+				-0.8
4,053,364	+				+0.2
4,053,365	-				+1.5
4,053,365	-				-1.1
4,053,365	-				-1.1
4,053,369	+				-0.0
4,053,370	-				-1.7
4,053,407	+				-2.5
4,053,407	+				-0.9
4,053,407	+				-0.3
4,053,408	-				-1.1
4,053,408	-				+0.4
4,053,408	-				-2.7
4,053,408	-				-1.0
4,053,421	+				-0.4
4,053,421	+				+0.9
4,053,422	-				-1.2
4,053,422	-				+0.6
4,053,423	+				-0.9
4,053,423	+				-2.1
4,053,423	+				-0.6
4,053,428	+				-1.5
4,053,429	-				+0.4
4,053,691	+		HGI48_RS18060	0.31	+0.1
4,053,692	-		HGI48_RS18060	0.31	-1.0
4,053,784	+		HGI48_RS18060	0.40	-1.9
4,053,784	+		HGI48_RS18060	0.40	-1.9
4,053,785	-		HGI48_RS18060	0.40	-1.6
4,053,823	+		HGI48_RS18060	0.43	-0.9
4,053,823	+		HGI48_RS18060	0.43	-0.5
4,053,823	+		HGI48_RS18060	0.43	-1.2
4,053,823	+		HGI48_RS18060	0.43	+0.2
4,053,823	+		HGI48_RS18060	0.43	+4.8
4,053,823	+		HGI48_RS18060	0.43	-1.6
4,053,824	-		HGI48_RS18060	0.43	-1.6
4,053,824	-				+1.1
4,053,824	-		HGI48_RS18060	0.43	-1.6
4,053,850	+		HGI48_RS18060	0.46	+0.5
4,053,850	+		HGI48_RS18060	0.46	+0.5
4,053,851	-		HGI48_RS18060	0.46	-2.6
4,053,851	-		HGI48_RS18060	0.46	-0.5
4,053,874	-		HGI48_RS18060	0.48	-0.1
4,054,007	+		HGI48_RS18060	0.60	-2.3
4,054,007	+		HGI48_RS18060	0.60	-0.0
4,054,007	+		HGI48_RS18060	0.60	-1.5
4,054,007	+		HGI48_RS18060	0.60	-1.9
4,054,007	+		HGI48_RS18060	0.60	-1.9
4,054,008	-		HGI48_RS18060	0.60	-0.3
4,054,008	-				-0.9
4,054,008	-		HGI48_RS18060	0.60	-0.0
4,054,008	-		HGI48_RS18060	0.60	-0.3
4,054,008	-				+0.1
4,054,008	-		HGI48_RS18060	0.60	-1.4
4,054,008	-		HGI48_RS18060	0.60	-1.3
4,054,008	-		HGI48_RS18060	0.60	-1.3
4,054,008	-		HGI48_RS18060	0.60	-0.3
4,054,008	-		HGI48_RS18060	0.60	-0.5
4,054,024	+		HGI48_RS18060	0.62	-1.6
4,054,024	+		HGI48_RS18060	0.62	+0.1
4,054,024	+		HGI48_RS18060	0.62	-2.4
4,054,024	+		HGI48_RS18060	0.62	-0.6
4,054,025	-		HGI48_RS18060	0.62	-1.0
4,054,025	-		HGI48_RS18060	0.62	-2.3
4,054,025	-		HGI48_RS18060	0.62	-1.6
4,054,025	-		HGI48_RS18060	0.62	+1.4
4,054,189	+		HGI48_RS18060	0.77	-0.3
4,054,189	+		HGI48_RS18060	0.77	-1.1
4,054,190	-		HGI48_RS18060	0.77	-1.3
4,054,190	-		HGI48_RS18060	0.77	-1.6
4,054,190	-		HGI48_RS18060	0.77	-0.7
4,054,442	-				-1.6
4,054,442	-				-1.8
4,054,459	+				-1.2
4,054,459	+				-1.3
4,054,459	+				+0.0
4,054,459	+				-0.6
4,054,459	+				-0.1
4,054,459	+				-0.0
4,054,459	+				-1.3
4,054,460	-				-0.3
4,054,460	-				+1.4
4,054,460	-				-1.1
4,054,460	-				-0.0
4,054,460	-				-0.3
4,054,460	-				+0.0
4,054,460	-				-1.0
4,054,460	-				-1.9
4,054,460	-				-0.5
4,054,461	+				-0.9
4,054,462	-				+0.7
4,054,521	+				-0.3
4,054,521	+				-0.3
4,054,521	+				-1.7
4,054,521	+				-2.0
4,054,522	-				-0.1
4,054,522	-				+0.9
4,054,737	+				-0.9
4,054,737	+				-0.3
4,054,769	-		HGI48_RS18065	0.23	-1.1
4,054,769	-		HGI48_RS18065	0.23	+0.3
4,054,769	-		HGI48_RS18065	0.23	-2.1
4,054,769	-		HGI48_RS18065	0.23	-1.6
4,054,769	-		HGI48_RS18065	0.23	+0.2
4,055,012	+		HGI48_RS18065	0.40	-1.8
4,055,108	+		HGI48_RS18065	0.47	-1.3
4,055,109	-		HGI48_RS18065	0.47	+0.4
4,055,226	+		HGI48_RS18065	0.56	-1.2
4,055,262	+		HGI48_RS18065	0.58	-0.9
4,055,262	+		HGI48_RS18065	0.58	+3.2
4,055,272	+		HGI48_RS18065	0.59	-1.3
4,055,418	+		HGI48_RS18065	0.69	+0.7
4,055,418	+		HGI48_RS18065	0.69	-1.6
4,055,418	+		HGI48_RS18065	0.69	-1.2
4,055,418	+		HGI48_RS18065	0.69	-1.2
4,055,418	+		HGI48_RS18065	0.69	-1.0
4,055,418	+		HGI48_RS18065	0.69	+0.6
4,055,419	-		HGI48_RS18065	0.69	-0.3
4,055,419	-		HGI48_RS18065	0.69	-1.3
4,055,419	-		HGI48_RS18065	0.69	-1.6
4,055,419	-		HGI48_RS18065	0.69	-2.0
4,055,419	-		HGI48_RS18065	0.69	-0.5
4,055,419	-		HGI48_RS18065	0.69	-0.9
4,055,419	-		HGI48_RS18065	0.69	-1.1
4,055,421	-		HGI48_RS18065	0.70	-1.5
4,055,421	-		HGI48_RS18065	0.70	-1.0